>input_sequence_70024
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
----------------------------------------------------------------------ATGCCCCCAC
TCGCTACTCGTCGCACGCGCGCACGTATGAGCCGACGCTCTCTGTATAAAGCGGCCACTGTGCACAAGTCAAATCGGCCA
AGAGGAGAAGCCAAGCAAAGAA----GCACAACACATCTCTGT------CTTCATTCACACGCGCGTGCGCGCAAGAGAG
AGAGAGAGAGAGAGAGGATT-----------------------CCTGGTTCGGTGGCGCTCGGCAATGTGATGGCGCAGC
CGCGGCAGCAGCAACGACAACGGCGCCTCATCGCGGCGCTCCTGGTGCTCCTCTCCCTCTGCTGCCTTGCTCGCCTCGGC
GCCGCGGCTTCTGCAGGTACGTACGCTAACTACGCGAGCACCGGCCTC---TGTTCTTGCTTGGTGCGAGGGGTTGTTTT
ACAGATCAGTCGCTTCATCAATCCTTGCAGCGAGGACTGACCCTGGCCGGAAGGATGGAGCGGCAACTGCGCTGGACAAG
GCCGAGTCACAGGTTTGCCTTGCGCCTCTCTCCATCCCCGCCGATTAATTAG----------------------------
-------------TTGCCGTTTTAGATAGTTGCTGATGCACATAGCAAAACTGGAGTGGAGATGAACCTTTTCTGTTTCA
TCCGTGGTCTATATGCAGGAGGAGGAGGCAGCGCCCGGGTTCACGGTGACCACCGTGCAGGAGCAAGGGCGAGGGCGAGG
ACCGGTGAGGGTGGTGATGGAGGTCGACATCGAGGACTATCCCCGGTATGGCGCCAATGGTCGGCACAACCCGGAGGGTC
CGCACCCGTGA---------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------
>chr3D_1_TraesCS3D01G185600
CAACGCCGACGGCCGTCGGCATTGGACCGATGTTCCTGCCCACGTGAGCGGTCGAGGAGATGGAGGTCGACATCGTCCAT
GGGCCTGTGGCGATGCTAAATCCAAAAACTAATTAAAATAAAAATAAAAAATCTGAATTTTTGTTGTTTACAAAGTTTGG
CAAATGTTTTGAATG-CTTGCAAAGTTTCATCCGGAATGGCATTCGTGA-AAGTTGTGGCAAAAAAACCAATGCTCCAAA
AAAGTTAATTTGGATCGCTGATTTTGTTATTTTGCCACAACTTTCACAAATGTCATTCTATGGTGAAACTTTGCAATCAT
TTGAAACATTTATCAAATTTTGCTAAAAAAATAGAAGTTTTTTATATGTTTTTTTTACAATATTTTTAGATTTTACTGTT
CACCCGCTGGAGCTCAGGTAATCCGCGTCCTGATTGTGTGCATTTTACTCGATGAGAGATCGATGGGCATATGGCAGCCA
AGCCAAACACCGACCAGCTAAGCCGAAAGCATGAGACAAACCTCGAATCATGAGACCTGACAAAT-AATTGGGTTTTGCT
CTGTGTGATCTGCAGTACCCCA-TTGCTGTGGCGCGATTTATTTTACTACTA---TAACCACACAAGTGGGGGAGCAGAT
CCTAAGCTGGAGTTTG-CCAGTTATTCAAACGCTTAAATAATAAGCGGTTGGTGATCCCATCCCAGGTTTATGCTTAGAA
TAGGAGGGCCGTGGC-------TGGCGCGCACCCGGAATCTGGGCATATGCCAACAAAAGTCGTGCGACTGCCCGACAGC
GCGCAGAGCAAAAGAGGCGATAAATAAGGCGGCGGTTGACCGGACGGACCCCTTCGCTCCGTGTGAACAGTGTATCCACA
GTCAAACCGGAAACATTTGCGTTTTCGTATTGCC----------CAC-----CAATCTATCCAGACGGCTCTTTGAACGT
TTGCGGTTTCGTCGGTAACGTAGAGGCCGTTTGCCGCTGCGGGAGGGAAGGGCCGCACCGCCACCCACAGATGCCCCCAC
TCGCTACTCGTCGCACGCGCGCACGTATGAGCCGACGCTCTCTGTATAAAGCGGCCACTGTGCACAAGTCAAATCGGCCA
AGAGGAGAAGCCAAGCAAAGAA----GCACAACACATCTCTGT------CTTCATTCACACGCGCGTGCGCGCAAGAGAG
AGAGAGAGAGAGAGAGGATT-----------------------CCTGGTTCGGTGGCGCTCGGCAATGTGATGGCGCAGC
CGCGGCAGCAGCAACGACAACGGCGCCTCATCGCGGCGCTCCTGGTGCTCCTCTCCCTCTGCTGCCTTGCTCGCCTCGGC
GCCGCGGCTTCTGCAGGTACGTACGCTAACTACGCGAGCACCGGCCTC---TGTTCTTGCTTGGTGCGAGGGGTTGTTTT
ACAGATCAGTCGCTTCATCAATCCTTGCAGCGAGGACTGACCCTGGCCGGAAGGATGGAGCGGCAACTGCGCTGGACAAG
GCCGAGTCACAGGTTTGCCTTGCGCCTCTCTCCATCCCCGCCGATTAATTAG----------------------------
-------------TTGCCGTTTTAGATAGTTGCTGATGCACATAGCAAAACTGGAGTGGAGATGAACCTTTTCTGTTTCA
TCCGTGGTCTATATGCAGGAGGAGGAGGCAGCGCCCGGGTTCACGGTGACCACCGTGCAGGAGCAAGGGCGAGGGCGAGG
ACCGGTGAGGGTGGTGATGGAGGTCGACATCGAGGACTATCCCCGGTATGGCGCCAATGGTCGGCACAACCCGGAGGGTC
CGCACCCGTGAGGCCGTGACAGTGGCCACCACGGCCGCCGCGGCCGCGAGATCAGTGCGCGCCGGCCTAGCTAGGCAGCT
GCTCGTCACCAGATCTGGTACTACTAGTTACAGCTAGGTTGGTTCGCGCGCACGCGACCATCACCACCACCCGTGCCTAC
GCGCACGGCGAGCTGTCGACGCGGCCGCGTGCCGCGCCGTAGGCCCGTAGCTTCACTTTACGCTTTCTGACGTTG---A-
----TTTGTCTTCCGCTACTGCTTCGTTCGCTTTTTTTTTTTTTTTTTTGCTTCCGCTGTTCCGGCCACCGGCTGCTGGA
CCTGGACATTTTGAGTTGTGACGGCAAGCCGTA-----TGGCGCGTGTGTTCCTCCTTGTTCTTCGCATGTTTATGGCCG
AGTTCTTTTCCGGCGGGATTCTGCAGAACTA-------AACAAATTCTCTCAGGATCTGCTTTCCACATAATCAACGGTC
GAGTTCTTTTCTGAGATTTGAGTTTAAGATTGTGGATTGAGTTGTGCGTTTAAATGTGTGTATAGTATCCTTAGACATAA
ATTGTTTGATGAATTG-TTAACACTTTATTATTTCAAACAGTATATTGTTGAATATGAGCACGAAAGTGATTTATGAATA
TCATAAAG--CGCCA----AATATTACAAATACAATGGTTTTAAAGTTTTGTTCGTTACAAATGTGTGGGTGT-------
-------------------GAACTAAAA-ATAGAACGAAC-AATCTCAAGGTATGAGAGTAGCAGCAATTGCCTCGCGTG
TTGTGTTCATGGTGCCATCATCATCTTCTGGTGGTATATTGTTGGCGCCTGTAAACGGCAATGGAGGTTGGACATATGCG
TCGTTGTCAAACTTGCTAAAATGCTCATCACGTAACTTGCTATCACGAATCCAATTATGAAGATACATGCATGCAATGAC
AATCATCTTTTGGGTCTCGAGTTTATACCCAGGTATGCCTT------CGAGAATTCGCCATTTCATCTTGAGAACACCAA
ACGCTCTTTCGATGACATTTCACAAAGAAGAA
>chr3B_102
CCAAAAAA------------------------------------------------------------------------
------------------------------AATTAAAATAACAATTAAAAAAATCTAAACTTTGTTGTGACAAAGTTTGG
TAAATGTTTTCAGTGCCTTGCAATGTTTCATCCTGAAATGACATACCTAGAAGTCGTGGCACAAAAACTGGTGCTCAAAA
AAGTTATATTTGGAGTGTTGATTTTGTATTTTTACCACGACTTCCACAAATGTCATTCTATGACGAAATTTTGCAATCAT
TCGAAACA-TTATGAAATTTTGCTAAAAACAGTTTTTTGATATA-----TTTTTTTACAATATTTTCAGATTTTACTGTT
CACCGGCTCGAGCTCAGTTAATCTGGGTCCTGATTC-GTGCATTTTACTCGATGAGAGGTCGATGGGCATATGACAGCCA
AGCCAAACACCGACCAGCTAAGCCGAAAGCATGAGACAAACCTCGAATCATGAGACCTGACAAAAAAATTGGGTTT--CT
CTGTGTGATCTGCGGAACCCCATTTGCTGTGGCGCGATTTATTTTA---CTA---TAACCACACAAGTGGGGGAGCAGAT
CCTAAGCTGGAGCTTG-CCAATTTTTCAAACGCTTAAATAATAAGCGGTTGGTGATCCCATCCCAGGTTT-TGCTTAGAA
TAGGAGGGCCGTGGCCCGTGGCTGGCGCGCACCCGGAATCTCGGCATATGCCAACAAAAGTCGTGCGCCTGCCCGACAGC
GCGCAGAGCGAAAGAGGCGATAAATAGTGCGGTGGTTGACCAGACGGACCCCTTCGCTCCGTGTGAACAGTGTTTCGGCA
GTC-------AAACATTTGCGTTTGTACGTCGTTTGTTTGTTCGCAC-----CTATCTATCCAGACGGCTCTTTGAACGT
CTGCGTTTTCGTCGGTAACGTAGAGGCCG-------------------------------CCACCCACGGATCCCCCCAC
TC-CTACTCGTCGCACCCGCGCGG--ATGAGCCGACGCTCTCTGTATAAAGCGGCCACTGTGCACAAGTCAAATCGCCCA
AGAGGAGAAGCCAAGCAAAGAACGAAGCAGAACACATCTGTCTGTCTTCCTTCATTCACACGCGCGTGCGCGCGAGGGAG
G------GAGGGAGGGAGGGAGGGAGGGAGAGAGAGAGGATTCCCTGGTTTGGTGGCGCTCGGCAATGTGATGGCGCAGC
CGCAGCAGCAGCAACGGCAACGGCGCCTCGTCGCGGCGCTCCTGGTGCTCCTCTCCCTCTGCTGCCTTGCTCGCCTCGGC
GCCGCGGCTTCTGCAGGTACGCACCAGGCGAATACTACCCGTCTCTCTTCTTGTTCTTGCTTGGTGCGACTGTTTGTCTT
ACAGATCAATCGCTTCGTCGATCCGTGCAGCGAGTGCTGACCCTCACCGGAAGGATGGAGCGGCGACTGCGCTGGGCAAG
GCCGCGCCACAGGTTTGCCTTGCCCCACTCTCCATCCCCACCGATTGATTAGTCTAGGAGAAGAGAAAACGCTCTACGCT
ACTCCTAGTATACTTGCCCTTTTAGATAGTTGCTGATGCACATAGCAAAACTGGAGTGGAGATCAACCTTTTGTGTTTCA
TCCGTCGTATATATGCAGGATGAGGAGGCAGCGCCCGGGTTCACGACGACCACCGTGGAGGACCGAGGGCGAGGGCGAGG
ACCGGTGAGGGTAGTGATGGAGGTTGACATCGAGGACTATCCCCGGTATGGCGCCAATGGCCGGCACAACCCGGAGGGTC
CGCACCCGTGA--------CAGCGGCCACCACGGCCGCCGCGCCCGCGAGATCAATGCGCGCCGGCCTAGCTAGGCAGCT
GCTCGTCACCAGATCTGGTACTA---GTTACAGCTAGGTTGGTTCGCGCGCACGCGACCATCACCACCACCCGTGCCTGT
GCGCACGGCTAGCTGTCGACGCGGCCGCGTGCCGCGCTGTAGGCCCGTAGCTTCGCTTTTCGCTTTTCCCTTTCCTACGT
TGATTTTGTCTTCCGCTACTGCTTCGCTTTC---------------TTTGCTTCCGCTCTTTCGGCCACCGGCTGCTGGA
CCTGAACATTGTGACTTGTGACGGCAAGCCGTACCGTATGGTACGTGTGTTCGTCCTTGTTCTTCGCATGTTTATGGCCG
AGCTCTTTTCGGGCGGGATTCTGCAGAACTA-------AAATTTTTATTTCATAATCTGCTTTCCACATAATCTGCAGTC
GACTTCTTTTCTGAGATTCCAGTTTAAGATTGTGGATTCAGTTATGCGTTGAAATGCCTGCA-AGTACCCTTAGACAGAA
ATTGTTCGATGGACTG-TTAACACTTTATTATTTCGAATAGTATCTTGTCGAATATGAGTGCGAAAGTGATTTACAAATA
TCATAAAA--TGCTA----AATATTACAACTACAAATATTTTAAAGTTTTGTTCGTTGCAAAAGTGGGCGAACTAAGTTC
AAAAAAAAGAAAAATGGGCGAACTAAAC-ATAGAACGAAT-AATCTCAAGGTATGAGACTAGCAGCAATCGCCTCGCGTG
TTGT--TCATGGTACCATCATCATCTTATGGTGGTAGAGTGTTGGCACCTGTAAACGACAATGGAGGTTGCACATATGCA
TCATTGTCAAACTTGCCAAAATGCTCATCACGTAACTTGCTGTCATGAATCCAATTATGGAGACACATGCATGCAATGAC
AATCATCTTTTAGGTCTCGAGTTTATACCCAGGTATGCCTC------CGAGAATTCGCCATTTCATCTTGAGAACACCAA
ACGCCCTTTCGATGACATTTCGCAAAGAAGAA
>chr3A_369
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------TTTTTTACAATATTTCCAGTTTTTACTGTT
CATCCGCTGGAGCTCAGGTAATCCGCATCCTGATTCTGCGCATTTTAGTCGATGAGAGGTGGATCGGCATATGACAGCCA
AGCCAAACACCGACCAGCTAAGCCCATAGCATGAGACAAACCTCGAATCATGAGACCTGACAAAT-AATTGGGTTT--CT
CTGTGTTATCTGCAGTACCCCA-TTGCTGTGGCGCGATTTATTTTACTACTAGTATAACCACACAAGTGGGGGAGCAGAT
CCTAAGCGGGAGTTTGCCCAATTTTTCAAACGCTTAAATAATAAGCGGTTGGTGACCCCATCCCAGGTTT-TGCTTAGAA
TAGGAGGGCCGTGGC-------TGGCGCGCACCCGGAATCTCGGCATATGCCAACAAAAGTCGTGCGCCTGCCCGACAGC
GCGCAGAGCGAAAGAGGCGATAAATAATGCGGCGGTTGACCGGACGGACCTCTTCCTTCCGTGTGAACAGTGTATCCACA
-TC-------AAACATTTGCCTAC-----------GTTTGTTGGCACCTACTCTATCTATCCAGACGGCTCTT-------
-TGCGTTTTCGTCGGTAACGTAGAGGCCGTTTGCCGCTGCGGGAGGGAAGGGCCGCACCGCCACCCACGGAT-CCCCCAC
TCGCTCCTCGTCGCACGCGCGCGC--ATGAGCCGACGCTCTCTGTATAAAACGGCCACTGTGCACAAGTCAAATCGCCCA
GGAGGAGAAGCCAAGCAAAGAACGAAGCACAACACATCTGTCTGTCTTCCTTCATTCACACGCGCGTGCGCGCAAGAGGG
G------GAGAGAGGGGATT-----------------------CCTGGTTCGGTGGCGCTCGGCGATGTGATGGCGCAGC
CGCGGCAGCAGCAACGACAAGGTCGCCTCGTCGCGGCGCTCCTGGTGCTCCTCTCCCTCTGCTGCCTTGCTCGCCTCGGC
GCCGCGGCTTCTGCAGGTACGCACCAGGCGAATACCACCCGTCTCTCTTCTTGTTCTTGCTTGGTGCGACTGTTTGTCTT
ACCGATCAATCGCTTCGTCGATCCGTGCAGCGAGTGCTGACCCTCACCGGAAGGATGGAGCGGCGACTGCGCTGGACAAG
GCCGCGCCACAGGTTTGCCTTGCCCCTCTCTCCATCCCCACCGATTGATTAGTTTGTTAGGTAC----------------
----------TACTTGCCGTTTTAGATAGTCGCTGATGCACATAGCAAAACTAGAGTGGAGATCAACCTTTTCTGTTTCA
TCCATGGTATATATGCAGGAGGAGGAGGCAGTGCCCGGGTTCACGGTGACCACCGTGGAGGAGCGAGCGCGAGGCCGAGG
ACCGGTGAGGGTGGTGATGGAGGTCGACATCGAGGACTATCCCCGGTATGGCGCCAATGGCCGGCACAACCCGGAGGGTC
CGCACCCGTGA--------CAGCGGCCACCACGGCCGCCGCGCCCGCGAGATCAATGCGCGCCGGCCTAGCTAGCCAGCT
GCTCGTCACCAGATCTGCTACTA---GTTACAGCTAGATTGGTTCGCGCGCACGCGACCATCGCCACCACCCGTGCCTGC
GCGCACGGCGAGCTGTCGACGCGGCCGCGTGCCGCGCCGTTGGCCCGTGGCTTCGCTTTTCGCTTTCCGACGTTGATTA-
----TTTGTCTTCCGCTACTGCTTCGCTTTC---------------TTTGCTTTCGCTCTTTCGGCCACCGGCTGCTGGA
CCTGAACATTGTGAGTTGTGACGGCAAGCCGTA-----TGGTACCTGTGTTCGTCCTTGTTTTTCGCCTGTTTATGGCT-
AGTTCTTTCCCCGCAGGATTCTGCAGAATCAAGATTCTAAAAAGTTCTTTCACAATCTGCTTTCCACAAAATCTGCCGTC
AAGTTCTTTTCTAAGATTCGAGTTTAAGATTGTGTATTCAGTTGAGCGTCGAAATGTGTG--TAGTAGTCTTAGAAAGAA
ATCGTTTGATGAATTG-TCAACACTTTATTATTTTAAACAATATCTTGTCAAATATGAGCACGAAAGTGATTTACGAATA
TCATAAAG--TGATTTACGAATATTACAACTACAATGGTTTTAAAGTTTTGTTCGTTACAAAAGTGGGTGAACTAA----
--------------------------AA-ATAGAACGAAT-AATCTCAAGGTATGAGACTAGCAGCAATCGCCTCGCGTG
TTGTGTTCATGGTGTCGTCATCATCTTCTGGTGATAGAGTGTTGGCACCTGTAAACAGCAATGGAGGTTGCACATATGCA
GCATTCTCAAACTTGTCAAAATGCTCATCACGTAACTTGCTATCACGAGTCCAATTGTGGAGACACATGCATGCAATGAC
AACCATCTTTTGGGTCTCCAGTTTGTACTGAGGTATGCCTT------CAAGAATTCGCCATTTCATTTGGAGAACACCAG
ACGCTCTTTCGATGACACTTCGTAAAGAAGAA
>chr4D_2113
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
------------------------------------------------------------------------TAGGGCCC
AGTTCTTTTCACACAGGATTCTGCAGAATTAAGATTTTGGAAAATTCTCCCAGAATCTACTTCTCCCAGAATCTGTTGCC
GAGTTCTTTTCTGGGATTGTAGGTTGAGATTCTGGAAAGAGTTGTGTGTTGAAATGTCTG--TAGTACCCTTAGACAAAA
AATGTTTGATGAATTTATTAACACCTTGTTGTTTCTAACAGTATCTAATCGAATATGAGCATGAAAGTGATTTACGAATG
TCATAAAAAGTGCTA----AATATTACATTTAGAATGGATTTAAAGATTTGTTCATTACAAAAGTGGATGAACTAA----
--------------------------AA-A--AATGG-AT-AATCTCAAGGTACGAGACTAGCAGCAATCGCCTCGCGTA
CTGCGTTCATGGTAC---CATCATCTTCTGGTGGTAGAGCATTGGCACCTGTAAATGACAATGGAGGTTGCACATATGCA
TCATTGTCGAACTTGTCAAAATGCTCATCACGTAACTTGCTATCACGAATCCAATTGTGGAGACACATGCATGCAGTGAC
AATCATCTTTTGGGTCTCCGGTTTGTACCGAGGTATGCCTCCATCTCCAAGAATTCGCCATTTCATCTTGAGAACACTAA
ATGTTCTTTCGATGACATTTCGCAAAGAAGAA
>chr4A_2113
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
------------------------------------------------------------------------TATGGCCC
AGTTCTTTTCACACAGGATTCTGCAGAATCAAGATTTTGGAAAATTCTCCCAAAATCTGCTTCTCCCAGAATCTGTTGCC
GAGTTCTTTTCTGGGATTGTAGGTTGAGATTCTGGAAAGAGTTGTGTGTTGAAATGTCTG--TAGTACCCTTAGACAAAA
AATGTTTGATGAATTTATTAACACCTTGTTGTTTCTAACAATATCTAGTCGAATATGAGTACGAAAGTGATTTCCGAATG
TCATAAAAAGTGCTA----AATATTACATTTAGAATGGATTTAAAGATTTGTTCATTACAAAAGTGGATGAACTAA----
--------------------------AA-A--AA--G-AT-AATCTCAAGGTACGAGACTAGCAGCAATCGCCTCACGTA
CTACGTTCATGGTAC---CATCATCTTCTGGTGGTAGAGCATTGGCACCTGTAAACGGCAATGGAGGTTGCACATATGCA
TCATTGTCGAACTTGTCAAAATGCTCATCACGTAACTTGCTATCACGAATCCAATTGTGGAGACACATGCATGCAGTGAC
AATCATCTTTTGGGTCTCAGGTTTGTACCGAGGTATGCCTCCATCTCCAAGAATTCGCCATTTCATCTTGAGAACACCAA
ATGTTCTTTCGATGACATTTCGCAATGAAGAA
>chr5A_2155
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
-----------------------------------------AAATTCTTCTAGAATCTGCTTCTCCCAGAATCTGTTGCC
GAGTTCTTTTCTGGGATTGTAGGTTGAGATTCTGGAAAGAGTTGTGTGTTGAAATGTCTG--TAGTACCCTTAGACAGAA
AATGTTTGATGAATTTATTAACACCTTGTTGTTTCTAACAGTATCTAGTTGAATATGAGTACGAAAGTGATTTCCGAATG
TCATAAAAAGTGCTA----AATATTACATTTAGAATGGATTTAAAGATTTGTTCATTACAAAAGTGGATGAACTAA----
--------------------------AAAA--AA--G-AT-AATCTCAAGGTATGAGACTAGCAGCAATCGCCTCGCGTA
CTGCGTTCATGGTAC---CATCATCTTCTGGTGGTAGAGCATTGGCACCTGTAAACGGCAATGGAGGTTGCACATATGCA
TCATTGTCGAACTTGTCAAAATGCTCATCACGTAACTTGCTATCACGAATCCAATTGTGGAGACACATGCATGCAGTGAC
AATCATCTTTTGGGTCTCCGGTTTGTATCGAGGTATGCCTCCATCTCCAAGAATTCGCCATTTCATCTTGAGAACACCAA
ATGTTCTTTCGATGACATTTCGCAATGAAGAA
>chr5A_2155
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
-----------------------------------------AAATTCTCCCAGAATCTGCTTCTCCCAGAATCTGTTGCC
GAGTTCTTTTCTGGGATTGTAGGTTAAAATTCTGGAAAGAGATGTGTGTTGAAATGTCTG--TAGTACCCTTAGACAGAA
AATGTTTGATGAATTTATTAACACCTTGTTGTTTCTAACAATATCTAGTCGAATATGAGTACGAAAGTGATTTACGAATG
TCATAAAAAGTGCTA----AATATTACATTTAGAATAGATTTAAAGATTTGTTCATTACAAAAGTGGATGAACTAA----
--------------------------AAAA--T--GG-AT-AATCTCAAGGTACGAGACTAGCAGCAATCACCTCGCGTA
CTGCGTTCATGGTAC---CATCATCTTCTGGTGGTAGAGCATTGGCACCTGTAAACGGCAATGGAGGTTGCACATATGCA
TCATTGTCGAACTTGTCAAAATGCTCATCACGTAACTTGCTATCACGAATCCAATTGTGGAGACACATGCATGCAGTGAC
AATCATCTTTTGGGTCTCCAGTTTGTACCGAGGTATGCCTCCATCTCCAAGAATTCGCCATTTCATCTTGAGAACACCAA
ATGTTCTTTCGATGACATTTCGCAAAGAAGAA
>chr2A_2155
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
-----------------------------------------AAATTCTCCCAGAATCTGCTTCTCCCAGAATCTGTTGCC
GAGTTCTTTTCTGGGATTGTAGATTGAGATTCTGGAAAGAGTTGTGTGTTGAAATGTCTG--TAGTACCCTTAGACAGAA
AATGTTTGATGAATTTATTAACACCTTGTTGTTTCTAACAGTATCTAGTTGAATATGAGTATGAAAGTGATTTCCGAATG
TCATAAAAAGTGCTA----AATATTACATTTAGAATGGATTTAAAGATTTGTTCATTACAAAAGTGGATGAACTAA----
--------------------------AAAA--A--GG-AT-AATCTCAAGGTACGAGACTAGCAGCAATCGCCTCGCTTA
CTGCGTTCATGGTAC---CATCATCTTCTGGTGGTAGAGCATTGGCACCTGTAAACGGCAATGGAGGTTGCACATATGCA
TCATTGTCGAACTTGTCAAAATGCTCATCACGTAACTTGCTATCACGAATCCAATTGTGGAGACACATGCATGCAGTGAC
AATCATCTTTTGGGTCTCCGGTTTGTACCGAGATATGCCTCCATCTCCAAGAATTCGCCATTTCATCTTGAGAACACCAA
ATGTTCTTTCGATGACATTTCGCAATGAAGAA
>chr5D_2155
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
-----------------------------------------AAATTCTCCCAGAATCTGCTTCTCCCAGAATCTGTTGCC
GAGTTCTTTTATGGGATTGTAGGTTGAGATTCTGGAAAGAGTTGTGTGTTGAAATGTCTG--TAGTACCCTTAGACAGAA
AATGTTTGATGAATTTATTAACACCTTGTTGTTTCTAACAGTATCTAGTCGAATATGAGTACGAAAGTGATTTACGAATG
TCATAAAAAGAGCTA----AATATTACATTTAGAATGGATTTAAAGATTTGTTCATTACAAAAGTGGATGAACTAA----
--------------------------AAAA--T--GG-AT-AATCTCAAGGTACGAGACTAGCAGCAATCGCCTCGCGTA
CTGCGTTCATGGTAC---CATCATCTTTTGGTGGTAGAGCATTGGCACCTGTAAACGGCAATGGAGGTTGCACATATGCA
TCATTGTCGAACTTGTCAAAATGCTCATCACGTAACTTGCTATCACGAATCCAATTGTGGAGACACATGCATGCAGTGAC
AATCATCTTTTGGGTCTCCGGTTTGTACCGAGGTATGCCTCCATCTCCAAGAATTCGCCATTTCATCTTGAGAACACCAA
ATGTTCTTTCGATGACATTTC-----------
>chr4B_2155
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
-----------------------------------------AAATTCTCCCAGAATCTGCTTCTCCCAGAATCTGTTGCC
GAGTTCTTTTCTGGGATTGTAGGTTGAGATTCTGGAAAGAGTTGTGTGTTGAAATGTCTG--TAGTACCCTTAGACAGAA
AATGTTTGATGAATTTATTAACACCTTGTTGTTTCTAACAATATCTAGTCGAATATGAGTACGAAAGTGATTTCCGAATG
TCATAAAAAGTGCTA----AATATTACATTTAGAATGGATTTAAAGATTTGTTCATTACAAAAGTGGATGAACTAA----
--------------------------AAAA--A---G-AT-AATCTCAAGGTATGAGACTAGCAGCAATCGCCTCACGTA
CTACGTTCATGGTAC---CATCATCTTCTGGTGGTAGAGCATTGGCACCTGTAAACGACAATGGAGGTTGCACATATGCA
TCATTGTCGAACTTGTCAAAATGCTCATCACGTAACTTGCTATCACGAATCCAATTGTGGAGACACATGCATGCAGTGAC
AATCATCTTTTGGGTCTCAGGTTTGTACCGAGGTATGCCTCCATCTCCAAGAATTCGCCATTTCATCTTGAGAACACCAA
ATGTTCTTTCGATGACATTTCGCAATGAAGAA
>chr1B_2155
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
-----------------------------------------AAATTCTCCCACAATCTGCTTCTCCCAGAATCTGTTGCC
GAGTTCTTTTCTGGGATTGTAGGTTAAGATTCTGGAAAAAGTTGTGTGTTGAAATGTCTG--TAGTGTCCTTAGACAGAA
AATGTTTGATGAATTTATTAACACCTTATTGTTTCTAACAGTATCTAGTCGAATATGAGTACAAAAGTGATTTACGAATG
TCATAAAAAGTGCTA----AATATAACATTTAGAATGGATTTAAAGATTTGTTCATTACAAAAGTGGATGAACTAA----
--------------------------AAAAATA---G-AT-AATCTCAAGGTACGAGACTAGCAGCAATCGCCTCGCGTA
CTGCGTTCATGGTAC---CATCATCTTCTGGTGGTAGAGCATTGGCACTTGTAAACGGCAATGGAGGTTGCACATATGCA
TCATTGTGGAACTTGTCAAAATGCTCATCACGTAACTTGCTATCACGAATCCAATTGTGGAGACACATGCATGCAGTGAC
AATCATCTTTTGAGTCTCCGGTTTGTACCGAGGTATGCCTCCATCTCCAAGAATTCGCCATTTCATCTTGAGAACACCAA
ATGTTTTTTCGATGATATTTCGCAAAGAAGAA
>chr2D_2191
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
-----------------------------------------------------------------------------GTC
GAGTTCTTTTCTGAGATTGTAGTTTGAGATTCTGGAAAGAATTGTGTGTTGAAATGTCTG--TACTACCTTTAGACAGAA
ATTGTTTGAGGAATTG-TTATCACTTTGTTGTTTTTAACAGTATCTAGTTGA--ATGAGTACGAAAGTGATTTACGAATG
TCACAAAAAGTGCTA----AATATTACATTTAGAATGGATTTAAAGTTTTGTTCATTACAAAAGTGGATGAAATAA----
--------------------------AAAT--AA--G-AAGAATTTCAAGGTACGAGACTACCAGCAATCGCCTCGCGTG
TTGCATTCATGGTAC---CATCATCTTCTGGTGGTAGAGCGTTGGCACCTATAAACGGCAATGGAGGTTGCACATATGCA
TCATTGTCAAACTTGTCAAAATGCTCATCACGTAACTTGCTATCACGAATCCAATTATGGAGACACATGCATGCAGTGAC
AATTATCTTTTGGGTCTCTGGTTTGTACCGAGGTATGC------CTCCAAGAATTCTCCATTTCATCTTGAGAACATCAA
ATGTTCTTTCGATGACATTTCACAAAGAAGAA
>SNPs
-S-SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSS-----------S---S-----SS-SS-SSS--SS-SS-S-----------
S---------S-S----------S---------S---SS-SSS-SSSS------S------S------SSS-----S---
--SS-SS-------SS-S---------SS----S----S----S------------------SS----S-----------
-S------S----S---------------S-SSSSSS-SS-S--SSSSS-----------------S-------------
-----------------------------------S----------------------S--------------S------
----------------------------------------------------------------------------SS--
--------------------------------------------------------------------------------
--------------------S--S----------------------------------------------S---------
-----------------------------------------S-------------------------S------------
---------S-----------------S----------------------------------------------------
---SSSSSSS--------------SSSSS-S-SS-------------------S--------------------------
S----S--------------------------------------------------------------S---S-------
----------------------S-SS--------------------------------------------------S---
---------------------------------------S-S--------------------------------------
SSSSSSS-------S-----------------------------------------------------------------
-----------------------------S--------------------------------------------------
---------------------S--SSSSSSS-SS-S-S-SSSSS-SSS---------------------SS-S----S--
--------S-------S--S----S---------SS--------SS------------------S---------------
----S-S----------------S---------------S------S---------------------------------
---------------------------------------------------------------S----------------
--------S------------------------------------------------S------S---------------
------------------------------------------------------------S-------------------
-----------SSSSSSSS---S-------------------S-----------S-------------------------
-----------------------SSS----------------------------------------------------S-
------------------------------------------------------S----S-------S------------
--------------------------S-SS-SSSSSSSSSSSSSSS------------S--S------------------
----S-----S------------------------------SS---------S---------------------------
----------------------------------------S------------S-------------------SS-S---
------------------S-------------------------------S---------S----------------S--
--------------------------------------------S-----------------------------S-----
----------S--S---------------S--------------------------------S---S-S-SSS-------
---------------------------------------S------------------S----------S----------
------------------------------------S-S-------S-----------------------S--------S
--S-------------S------------------------------------------S---S----------------
--------------------------------------------------------------------------------
--------------------------------
>forward_78
----------------------------------------------------------GATGGAGGTCGACATCGTCC--
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------
>reverse_1407
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
----------------------------------------------TCTGTTCTTGCTTGGTGCGA--------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------
>forward_1387
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
-------CTTCTGCAGGTACGTACGCT-----------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------
>reverse_2677
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
------------------------------------TATTGTTGGCGCCTGTAAACG-----------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------
