>input_sequence_69994
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----------------------------------------------CGCACCGGAGATC-GCTGACGCCCGCCCGGCCGC
GGCCATGGAGGAGGAGAAGAAGATGAAGCTCTGCTTCTCCATCCCCTCGAAGCCCAAGGTCAAGCCCGCCACGCCCCCCG
CCGCCTTCTCCGTCGCCGCCGTGGCCCCCGGCCCCGCCCCGCGGTTCGTCACCGTGTTCGATCCCTCGGAAA----CCCT
GACCCCA---------G---------CGCCCGCCGTCATCGCGCCCCTTCCCGACTCCCGCAAACCCTCCCCAGCCGCTG
CCGCGCCGGCCGCGCCCGTCGTCATCGCGCCCCTTCCCAACACGCGCAGGCTCGCCGAGGCCCCCGCCTTCGTGCTCGGC
GCCTCCGACAGCCGCTCCTCCAGCGCAGCCTACGGCCTCACCGTCCGCAATACGGATTCGAAGAGGAAGCTTGAGCCCCA
GGACGATGCCGCTAGTCAGCAGCCGCCGCCTCCAGGCCCCAGCGGCGAGGACCTTATGCTGCGGCGGTTCAAGGAGGACA
TGGCCGTTCTCCCGGAGATCCAAGGCACGGACGAGTATGACGAGGTGCCTGTGGAGGGCTTCGGCGCTGCTCTCCTCGCT
GGCTATGGCTGGAAGGAAGGGGATCCTATCGGCAAGAAGTACAAGGGCATGGGGGATGTCAAGGGTTCGTGAGCACGGCC
GCCGCCGCTGCGGCACGCAGGGTTTAGGCTCGTAAGGTTGCCAGGTCGTGACAGTTCCTGTTTCTTGTTTATTTTCTTGA
TTTTAGTTATCGTA------------------------------------------------------------------
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>chr4A_1_TraesCS4A01G053200
TCATGACGGACTAAAACTGCCTGAAGCGGCGTGAGGGACGAAAACTATCCGGTTTTGATAGTTGAGGGACGAAAACTATC
CAATTTTAAGTTGAGGGATGATTTCTAAACTCTCGGAAGAGTTCGAGGACGAAAAATATATTTATCCCTAACCCAAAACC
TCCTCATCTCCGAATTATTGTTCACAAATTATTATGTGCCTTGGTACAAGAGAAGTGGTCTTCGGGGCCAATAAACCTGG
ACGGAGGGAGTAGACGTCTTCATAGTCGAAGGGAACGTTTTCTGTCACTAAATGCACATCATTAGAAGGCCCAAAATAAA
TCTAGAAAAATACGAGCATCAATGTCAACTCTAGGATTTGAACTCTTGTGGGCTCGGATACCGCTATCTTCCTAACCATC
CAACCACGGTTTGGTTTGCAAAATTACCATGGAGCCAGTGACGCTACACACGCTTCATTGGGCGGGCCATAAACCGGCTA
GCTTAGGAAATATGTCTGAAATTTTGCTCCGAGAGCCTCAATTCAGCACCATTCTACACTGTAATCTTATCTGACTGGAC
GGGCCATGGCATGGTTTTGCCCAGCCGTAGCTCCGCCACTGCATGGAGCTAAAACATTGATTCACCAATGATTGAACGGG
TTGAGCAGCCTCACCAATGAAGAAGCCCGGCATGACCTCCTCCTCGATGCTTTTTGTGTCGGGTGAGGGAAGCAGGGCTC
ATGCGCCCTGTAAGCGTGGGCCGGCCCAACAAGCGAGCTTTCGCTCAGTCATCCCCCTTCGATCCCTCGGTTAGCCGGTC
AAAATGATCATGGTTCTAACAAAATGTTTGTACATCTAATGGGCCGACCCATTTCAGTTTGCTGGTCTGGGCGCTATGAG
CGGGTTGTACTGTTAAGACCAAATAAAGCCCATCCGATCAGGTGTCGAAGACGGTTTGGTCGTGGACTA-TAATT-GATG
CCAATCAGACCCCC---AATGCCCCAA-CCCAAACTCCATATCAATCGCACCGGAGATC-GCTGACGCCCGCCCGGCCGC
GGCCATGGAGGAGGAGAAGAAGATGAAGCTCTGCTTCTCCATCCCCTCGAAGCCCAAGGTCAAGCCCGCCACGCCCCCCG
CCGCCTTCTCCGTCGCCGCCGTGGCCCCCGGCCCCGCCCCGCGGTTCGTCACCGTGTTCGATCCCTCGGAAA----CCCT
GACCCCA---------G---------CGCCCGCCGTCATCGCGCCCCTTCCCGACTCCCGCAAACCCTCCCCAGCCGCTG
CCGCGCCGGCCGCGCCCGTCGTCATCGCGCCCCTTCCCAACACGCGCAGGCTCGCCGAGGCCCCCGCCTTCGTGCTCGGC
GCCTCCGACAGCCGCTCCTCCAGCGCAGCCTACGGCCTCACCGTCCGCAATACGGATTCGAAGAGGAAGCTTGAGCCCCA
GGACGATGCCGCTAGTCAGCAGCCGCCGCCTCCAGGCCCCAGCGGCGAGGACCTTATGCTGCGGCGGTTCAAGGAGGACA
TGGCCGTTCTCCCGGAGATCCAAGGCACGGACGAGTATGACGAGGTGCCTGTGGAGGGCTTCGGCGCTGCTCTCCTCGCT
GGCTATGGCTGGAAGGAAGGGGATCCTATCGGCAAGAAGTACAAGGGCATGGGGGATGTCAAGGGTTCGTGAGCACGGCC
GCCGCCGCTGCGGCACGCAGGGTTTAGGCTCGTAAGGTTGCCAGGTCGTGACAGTTCCTGTTTCTTGTTTATTTTCTTGA
TTTTAGTTATCGTA-----T--GTATGTATGGTTTTATCCAGCGAGGGTGGAGCATTGTTCTGAACTTAATAGTAA----
CATCAGACTTTGTATTTACCTATCTAGAAAATCAGTGTTTT-----CATTCTGAGATATTTCTGAT--------TGGCAC
AGATTTGGGCATCCAATTCTTGAGTGTGAGCTTGGGAGTTGGGACAAGAGAGTGTCGGAGCGGGCTAGCTCAAGCACTGA
AGAACAACACTAGTTCTTCTTGACATGAAAACCCGAAATCATTCAAGAGAGCTTATGCACCCCGGTACCT---------T
TATCCTGAGCGTCCATGCTGCTAGGGATCTGAGTCAGCCTGGTCCGTAAAATGCCACTGCCCCGTTACTTTTCCAGGGGA
TTACAGGGTCAGGCACTCGTGGCCCGCCGCAAGGCCGCTAGGGGCATTGTTCATACTCAGGGCACTGTTTCCTCTGACCG
CTGCGCACACCAGATAAGACCAAATGCATGTGGACGTTTTCACCTCTTCCCGGCGTACTCACATGGAATCTACATGTACT
GTTTCAAACTACACATATCCATGGCACA-AATCGTCTTTGACTT---G--TAATTTGTATGCGTCATGTACAAGGTCCGT
GTTTTGTTTTGGGAGAGGATGGATGTGTGATCCATCGATGATGAGCCAGGCACATGTGTGAACCAAAGCCGTGTCATGTA
CTAGGTCCATGTTTTATTTTGCGAGAGGAAGGAG-----------CCTGCAAACAATGAACAGAAACGAACATATACCAA
CCGTTTTGCAGAACCATTCGACCGGCATTCTCCCTCAGGTGAACCTTAAATGTGTAATCACCGCCAGTGCCGATACGGAC
GACTCGGGGGGGCTTTCCCAGGCACGATCTGAGACAGATTGGGAGGAACGACGGGCTTGCTAAGGCCGTCGCCGCAAAGC
ACGACACTGAACTGAGTGAAGTCGTCATGAACGCGCTCGCCACGGAAGAAGCCAACACCTGGCTTTCTCCCTTTCTTCTT
TCGCCTTGACGAGGAAGCAGCGCC
>chr4D_906
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-------------------------AAGCCCATCCGATCAGGTGTCGAAGACGGTTTGGTCGTGGACTACTAATTCGATG
GCAACGAGACCCCCCCCAAGGCCCCAA-CCCAAACCCCAGATAGATCGCACCGGAGATTTGCCGACGCCCGCCCGCCCGC
AGCCATGGAGGAGGAGAAGAAGACGAAGCTCTGCTTCTCCATCCCCTCGAAGCCCAAGGTCAAGCCCGCCACGCCCCCCG
CCGCCTTCTCCGTCGCCGCCGTTGCCCCCGGCCCCGCCCCGCGGTTCGTCACGGTGTTCGATCCCTCGGAAATTAACCCT
CACCCCAGCCCCCGCCG---------CGCCCGCCGTCATCGCGCCCGTTCCCGACTCCCGCAAACCCTCCCTAGCTGCTG
CTGCGCCGGCCGCGCCCATCGTCATCGCGCCCCTTCCCAACACGCGCAGGCTCGCCGAGGCCCCCGCCTTCGTGCTCGGC
GCCTCCAGCAGCCCCTCCTCCAGCGCAGCCTACGGCCTCACTGTCCGCAACACGGAGTCGAAGAGGAAGCTTGATCCCCA
GGACGATGCTGCCAGGGAGCAGCCGCCGCCTCCAGGCCCTAGCGGCGAGGACCTGATGCTGCGGCGGTTCAAGGAGGACA
TGGCCGTTCTCCCGGAGATCCAGGGTACCGACGAGTATGACGAGGTGCCTGTGGAGGGCTTCGGCGCTGCTCTCCTCGCT
GGCTATGGCTGGAAGGAAGGGGATTTTATTGGAAAGAAATACAAGGGCATGGGCGATGTCAA-GGTTCGTGAGCACGGCC
GCCGCCGCTGCGGCACACAGGGTCTAGGCTCGTAAGGTTGCCAGGTCGTGACAGATCCTGTTTCTTGTTTATTTTCTTGA
TTTTAGTTATCGTA-----TATGTATGTACGGTTTTATCCAGCGAGGGTGGAGCATTGTTCTAACAGTTTTGCTAAATAT
CATCAGACTTTGTCTTTACCTATCAAGAAAATCAGTGTTCTCCTCACATTCTGAGATATTTCTGGTGTCAATGGTGGCAC
AAATTTGGGCATCCAATTCTTGAGTGTGAGCTTG--AGTTGGGACAACAGAGTGTCAGAACGGGCTAGCTCAAGCACTGA
AGAACAACACTAGTTCTGTTTGACATGGAAACC-----------------------------------------------
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>chr4B_906
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-------------------------AAGCCCATCCGATCAGGTGTCGAAGACGGTTTGGTCGTGGACTACTAATT-GATG
ACAAGCAGACCCCC---AAGGCCCCATCCCCAAACTCCAGATCGATCGCACCGGGAGATTGCTGACGCCCG----CCCGC
CGCGATGGAGGAGGAGAAGAAGATGAAGCTCTGCTTCTCCATCCCCTCGAAACCCAAGGTCAAGCCCGCCACGCCTCCCG
CCGCCTTCTCCGTCGCCGCCGTGGCCCCCGGCCCCGCCCCGCGGTTCGTCACCGTGTTCGATCCCTCGGAAA----CCCT
CACCCCA---------GCGCCCGCCGCGCCCGTCGTCATTGCGCCCCTTCCCGACTCGCGCAAACCCTCCCCAGCTGCTG
CCGCGCCGGCCGCGCCCGTCGTCATCGCGCCCCTTCCCAACACGCGCAAGCTCGCCGAGGCCCCCGCCTTCGTGCTCGGC
GCCTCCGACAGCCCCTCCTCCAGCGCAGCCTACGGCCTCACCGTCCGCAATACGGATTCGAAGAGGAAGCTTGATCCCCA
GGACGATGCTGCTAGGGAGCAGCCGTCGCCTCCAGGCCCCAGCGGCGAGGACCTGATGCTGCGGCGGTTCAAGGAGGACA
TGGCCGTTCTCCCGGAAATCGAAGGTACGGACGAGTATGACGAGGTGCCTGTGGAGGGGTTCGGTGCTGCTCTCCTCGCT
GGCTATGGCTGGAAGGAAGGGGATTCTATTGGAAAGAAATACAAGGGCATGGGCGCTGTCAA-GGTTCGTGAGTACGGCC
GCCGCCGCTGCGGCACGCAGGGTCTAGGCTCGTAGGGTTGCCAGGTCGTGACAGTTTCTGTTTCTTGTTTATTTTCTTGA
TTTCGGTTATCTGTAACTGTAAGTATGTATGGT----------------------------------------------T
CATCAGACTTTGTCTTTGCCTATCAACAAAATCAGTGTTTTCCTCGCATTCTGAGATATTTCTGGTGTCAATGGTGGCAC
GGATTTGTGCATCCAATTCTTGGGTGTGAGCTTG--AGTTGGGACAACAAAGTGTCAGAACGAGCTAGCTCAAGCACTGA
AGAACAACACTAGTTCTTCTTGACATGAAAACC-----------------------------------------------
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>chr2A_1981
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---------------------------------CGAAATCATTCAAGAGAGCTTATGCACCCCGGTACC---------CT
TATCCTGAGGGTCCATGCTGCTAGGGATCTGAGACAGCCTGGTTCGTAAAATGCCACTG-CCCGTTACTTTTCCAGGGGA
TTACAGGGTTAGGCACTCGTGGCCCGCCGCGAGGCCGCTAGGGGCACTGTTCATACTCACGGCACTGTTTTCTCTGACCG
CTGTGCACACCAGATAAGACCAAATGCATGTGGACGTTTTCACCTCTTCCCGG-GTACCCACATGGGATCTACATGTACT
GTTTCAAACTACACATATCCATGGCACA-AATCATCTTTGACCTGTAG--TAATTTGTATGTGTCATGTACGAGGTCCGT
GTTTTGTTTTGGGAGAGGATGGATGTGTGATCCATCGATGATGAGCCAGGCACATGTGTGATCCAAAGCCGCGTCATGTA
CTAGGTCCATGTTTTATTTTGCGAGAGGAAGAAGCCTGTCGCCCACCTGCAAACAATGAACAGAAACGAACATATACCAA
CCGTTTTGCAGAACCATTCGACCGACATTCTCCCTCAGCTGAACCTTGCACGTGTAATCACCGCCAGTGCCGATACGGAC
AACTCGTGGGGCC-TTCCCAGGCACGATCTGAGACAGATTGGGAGGAACGACGAGCTTGCTAAGGCCGTCGCCGCAAAGC
ACGACACTGAACTGACTGAAGTCATC------------------------------------------------------
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>chr2B_1981
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---------------------------------CGAAATCATTCAAGAGAGCTTATGCACCCCGGTACTCTTATCCCTCT
TATCCTGAGCGTCCATGCTCCTAGGGATCTGAGTCAGCCCGGTCCGTAAAATGCCATTG-CCCGTTACTTTTCCAGGGGA
TTACAGGGTCAGGCACTGGTGGCCCGCAGCGAGGCCGCTAGAGGAACTGTTCATACTCAGGGCACTGTTTCCTCTGACCG
CTGGGCACACCGGATAAGACCAAATGCATGCGGACGTTTTCACCTCTTTCCGGCGTACTCACATG----CTATATGTACT
ATTTCAAACTGCACATATCCACGGCACAAAATCGTCTTTGACTTGTACTCTAATTTGTATGCGTCATGTACGAGGTCTGT
GTTTTGTTTTGGGAGAGGATAGATGTGTGATCCATCGATGATGAGCCAGGCACATGTGTGATCCAAAGCCGCATCATGTA
CCAGGTCCATGTTTTATTTAGCGAGAGGAAGGAGCTTGTCGCCAACCTGCAAACAATGAACAGAAACGAACATAACCCAC
CCGTTTTGCAGAACCATTCGACTGGCATCCTCCCTCAGCTGAACCTTGCATGTGTAATCACCGCCAGTGCCGA-----AC
GACTCGCGGGGCC-TTCCCGGGCACGAT----------------------------------------------------
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>SNPs
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSS-------------------------------------------------------
S---S--------------S-------------------S---S--------------S----------------S----
S-------------------------------------------------------------------------------
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S--------------------------------------------------------------------------S----
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-------------S------------------------------------------------------------S-----
---------S-----SS-------------------------------------S-------------------------
-------------------------S------------------------------------------------------
------------------------S----S--S-----S--------------S--------S-----------------
-----------------------S--------------------------------------------------------
--------------------------------------------------------------S-SSS-SS-SS-------
-------------S----------S---------------------------------------S---------------
----------------------------------SS-----------S--------S--S--------------------
---------------------------------------------------------------------S----------
-----------------------------------------------------------S--------------------
------------------------------S---------------S---------------------------------
---S--------------------------------------------------------------S-------------
-----------------------------------------------------------------------S--------
-------------------------------------------------------------S---------S--------
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--------------------------------------S--------SS-------------------------------
------S----S-S---------------------------------------S--------------------------
---------------S-------S--SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSS
>forward_795
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-------------------------------------------------------CCTTCGATCCCTCGGTTAGC-----
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>reverse_2773
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----------------------------------------------------CAACACCTGGCTTTCTCCCT--------
------------------------
