>input_sequence_69990
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---CACTCCCTCCGACTTCCGTTACCAGTTCCGTCCGTCTCCTCCCATTTATTAAGGCGAGAGCCCCTCGCTCGCTCGTC
CAG-----GAAAGGAGGCCAAAGGGAGCGCGGGCGGTTCGTTCAGATCCCGGTCTCGCCATGCCGAGGACAAGGAGGTTG
CGCGGCGGATTCCGGCTGGGCCGCAAGCTGCTGACCGCGTGGCGGTGGGCGCTCTGCGGCCGGAGCCGGCGCCGGGGCG-
-----GCTACCTCCGCCTCGACACGCCGTGCCCGGTGGAGGGCAGGGAGGCCAAGAAGCTGGCGCCGGTGCTGCGGTGGG
GGCAGTCGCTGGCGCGGCTCCTCAGCCTCGGCCGTACGGACCGCGGCCAGCGAACGCTCGGCGGCGGCGGCGGCGACGAG
GCGGTGAAGACCCCCAAGGGGCAGGTGGCGGTGTACGTCGGCGGTGGCGGGCCCGGGGAGCCGCTGCGGTACGTGGTGCC
GGTGGTGTACTTCAACCACCCCATGTTCGGGGAGCTGCTGAGGGAGGCGGAGGAGGCGTTCGGCTTCCAGCACCCCGGCG
GTATCACCATCCCCTGCGCCGCCGCCAAGTTCGAGCGCGCCGCCGCCGTGGCCGCCGGAGGGAAGAAGGGGTTCGCCAGG
TGGTAGCATCGGGCCCGTAGGCGTAGGAGTC------------CCCCGGCCCTAGCTGGCCTGATCGCCTCCGCTGCTGC
GTGCGGTGGAGGCGAATGGTGACATGGTGTACAGTGCATGTGTGTTTCCAT-----------------------------
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>chr2B_1_TraesCS2B01G403800
TAATGGCTACATGCAAACAACGACAAGGTACACATACCCTTTTAGCAGTAAAGATTAATTACATTAATAGTTTGATTTGT
AAATTAGTTCGGCTCTTGGTTACCAAATTATTTTCACAATGATAGCCATGCGTGAATGACGACGACGTATGCATTTCCTA
GAGTTAGGTAAGATGTAGATGCTCTGACGAGCTACTCCATTTGTCCCATAATATAAACGTTTTTGCAAGCTACGTCTTAT
ATTGTGGGATACATCCATTTCCGAGACAAGTAATTCTGAACGGAG----------------------------GGAGTAC
ATACAAAGAAAAATGAGTGAATCTGTAATCTAAAATACGTCTACATACGTTCATATATAGTCCGTATTGAAAATCTCTAA
AAAGTCTTGTATTTAGAAACAAGGAAGTACAGTGTGATAAAACAAACACTCAAACACTATTACATTATGGGACTGATGGA
GTATAAACTAGCTAGCTGTGGTCCTTTTTGATGATTTTCGTACTAAAAAATGAGATGGATTTGGACATCCCACGGCTTAC
ACTCCGTCGACATGCAAAGGCTCTTGCGCGTAATTGCATGGACAGAAGTACATGACTCTATCTTGTAAC--TGTGGCCCA
AAGCAGCCTAGCCAAATGGGCGTAGTGTGGCGGACGCTCTCCAGAGTCCAGCGGATATCATGGACCACGCCCGTGCCCGC
CGGAGAACACCAGCCATTACCGAACAAAAACGCCGCCTCGCCACCGAAAACAAGGTAAAATCACGTCAAAAGAA-AAGAA
AAGAAACACGCAAAATCCCAGACAAATACCCCATACGAAATCTTCTCCTGCCAGCCAGTAGGCACAATCCCAGCGCCGAA
CGGAGCCAAGAACCTTCCTTTCATCAAAACGAAAAACGACGAGCTGCAGG-----------AAAAAAACACCATGAAATT
TTAGGATCTCAAAAAAGCCGCGCACAGCCC-GCTCTGGTGAGGCTGACGCCTATATAAAACAGTCCACTTCCCCCACTAA
TCACACTCCCTCCGACTTCCGTTACCAGTTCCGTCCGTCTCCTCCCATTTATTAAGGCGAGAGCCCCTCGCTCGCTCGTC
CAG-----GAAAGGAGGCCAAAGGGAGCGCGGGCGGTTCGTTCAGATCCCGGTCTCGCCATGCCGAGGACAAGGAGGTTG
CGCGGCGGATTCCGGCTGGGCCGCAAGCTGCTGACCGCGTGGCGGTGGGCGCTCTGCGGCCGGAGCCGGCGCCGGGGCG-
-----GCTACCTCCGCCTCGACACGCCGTGCCCGGTGGAGGGCAGGGAGGCCAAGAAGCTGGCGCCGGTGCTGCGGTGGG
GGCAGTCGCTGGCGCGGCTCCTCAGCCTCGGCCGTACGGACCGCGGCCAGCGAACGCTCGGCGGCGGCGGCGGCGACGAG
GCGGTGAAGACCCCCAAGGGGCAGGTGGCGGTGTACGTCGGCGGTGGCGGGCCCGGGGAGCCGCTGCGGTACGTGGTGCC
GGTGGTGTACTTCAACCACCCCATGTTCGGGGAGCTGCTGAGGGAGGCGGAGGAGGCGTTCGGCTTCCAGCACCCCGGCG
GTATCACCATCCCCTGCGCCGCCGCCAAGTTCGAGCGCGCCGCCGCCGTGGCCGCCGGAGGGAAGAAGGGGTTCGCCAGG
TGGTAGCATCGGGCCCGTAGGCGTAGGAGTC------------CCCCGGCCCTAGCTGGCCTGATCGCCTCCGCTGCTGC
GTGCGGTGGAGGCGAATGGTGACATGGTGTACAGTGCATGTGTGTTTCCATCAGCAAAGGGGCTAATTTTGTTCCATTGA
TTCATCTTCCTGCCGTTT-A-----ACTAGTGGATGGACGCCGTTCTTTTTCTTTTTCCTATGGATT-------------
----------------GTGGATGCAAGTTCATCTCAGAATCTCTAAAGTTTCATCGTTTGCTGTTGACAAATCTGACCCT
GACGAACTCCGGCGAGCGAGCGAACCGGGCCGACGAATTTCTCTTACGAACGTTCAATTCAAGACCGGAGGATGGTAGTA
TGAACACAAAAGGTTCTATCGGAGTCGATGCTACGGTCTGCAATGGATTTTGCGGCCATCCC-GCCCAGCCTAGAAATTT
CTCGCGAGCAAAATGCTACTACCTCCGTCTCAGTGAATAAGTCATTTGCGTAGTTCTATCTAAATATGTATTACATGCGA
CAAAAAATATATATTTAGAAACTACATTCGTGTAGAAATCTAGTGATATACTTTTCATGACATATAACACATATTTAATT
GCTTAAATCGATGACCTGAAACTACGCGAATGACTTATTCACCTAGATGGAGGTAGTACCGACGCCATTGAATTCATGCT
TATCTATCTCTGACTAGGGAGTACGGGGAACCGTGCCACTCAGTTACTACTCC----TCCCCACCGAGGAAGG----TGG
GAACGGTACAAACTTACTGTACGAAACCGTACGCCCCCGGCCGGCCGTACCTCGGTCACGCACGCATGATTC-----GGC
GGTTGGTTGGAGCACGCTCCTTTGGCCATGCCACTTTTGCACGCCATTGCCACACTCCCCGCTCG---------------
-----------CCATAGGCGTGATGCCACAGCTAGCATAGCAGCGGCAACGACAGCCAACGAGCACGGCGTCACTCCGGT
CCCGTGCCTTGCACCGTTGTGCCCCGCTTTCGAATCAGTTGTACCGCCCCTGCATCTGCATGGCCGCGGGTCCGGCCGGG
GCCTTGGCGCGCCACCGGCGATAGACAGGGACCGCCCGTGCGCGCGCATCCTTTTCTCCGGTGGAATTCCACCGCGACGC
CGATGG
>chr2D_1
TAATGGCTACATGCGAACAACGACAATGTACACATACCCTTTTAACAGTAAAGATTAATTACATTAATAGTTTGATTTGT
AAATTAGTTCGGCTCTTGGTTTCCAAATTATTTTCACAATAATAGCCATGTGTGAATGACGACGACGTACGCATTTCCTA
GAGATAGGTAAGATGTAGATGCTCTGACGAGCTACTCCATTTGTCCCATAATATAAACGTTTTTGCAAGCTACGTCTTAT
ATTGTGGGATAGAAGGAGTAGTTTCTTCTATTTCCTCGGTCCTAAATATAAGACCTTGTAGAGATTTTACTATGGACTAC
ATACAAAGAAAAATGAGTGAATCTATAATCTAAAATACGTCTATATACATCCATATATAGTCCGTATTAAAAATCTCTAA
AAAGTCTTGTATTTAGAAACGAAGGGAGTATA----ATAAAACAAACACTCAAACACTATTACATTATGGGAGTGAT-GA
GTATAAACTAGCTAGCTGTGGTCCTTCTTGATGATTTTCGTACTAAAAAATGAGATGGATTTGGACATCCCACGGCCTAG
ACTCCGTCAACATGCAAGTTCTTTTGCGCGTAATTGCATCGACAGGAGTACGTGAATCTATTTGTACTGATTGTGGCAGA
AAGCAGGCCAGCCAAATGGGGGTAGTGTGGCGGAGCCGACGGAT---------GAAATCATGGACCACGACCGTGCCCTC
GGAAGCACACCAGCCATTAGCGAACAAACACGCCGCCTCGCCACCGAAAACCAGGTAAAATCACCTCAAAAGAAGAAGAA
AACAAACACGTAAAATCCCAGACAAATACCCCACACGAAATCTCCTCCTGCCAGTCAGTAGGCACAAGCCCAACGCCGAA
CCGAGCCAGGAACCTTCCTTTCATCAAAACGGAAAACGACGAGCTGCAGGAAAACACATCAAAATTTTAG----------
-TAGGATCTCAAAAACGCCGCGCACAGCCCCGCTCTCGCGAGGCTGACGCCTATATAGAACAGTCCACTTCCCCCACTAA
TCACACTCCCTCCGACTTCCGTTACCAGTTCCTTCCGTCTCCTCCCATTCATTAAGGCGAGAGCCCCTCGCTCGCTCGTC
CAG-----GAAAGGAGGACAAAGGGAGCGCGGGCGGTTCGTTGAGATCTCGGTCTCGCCATGCCGAGGACAAGGAGGCTG
CGCGGCGGGTTCCGGCTCGGCCGGAAGCTGCTGACCGCATGGCGGTGGGCGCTCTGCGGCCGGAACCGGCGCCGGGGCGG
CGGTGGCTACCTCCGCCTCGACACGCCGTGCCCGATGGAGGGCAGGGAGGCCAAGAAGCTGGCACCGGTGCTGCGGTGGG
GCAAGTCGCTGGCGCGGCTCCTCAGCCTCGGCCGGGCGGACCGCGGGCAGCAGACGCT---------------CG---AG
GCGGTGAAGACCCCCAAGGGGCAGGTGGCGGTGTACGTCGGCGGCGGCGGGCCCGGGGAGCCGCTGCGGTACGTGGTGCC
CGTGGTGTACTTCAACCACCCCATGTTCGGGGAGCTGCTGCGGGAGGCCGAGGAGGCGTTCGGCTTCCAGCACCCCGGCG
GCATCACCATCCCCTGCGCCGCCGCCAAGTTCGAGCGCGCCGCCGCCGTGGCCGCCGCCGGCAAGAAGGGGTTCGCCAGG
TGGTAGCATCGATCCCGTAGGCCTAGGAGTC------------CC--------------------CGCCTCCGCTGCTGC
GTGCGGTGGAGGCGAATGGTGACATGGTGTACAGCGCATGTGTGTTTCCATCAGCAAAGGGGCTAATTTTGTTCCATTGA
TTCATCTTCCTGCCGTTTTA-----ACTAGTGGATGGATGCGGTTCTTTTTCTTTTTCTAGGAAAGGTTATTTACTCATC
TATGGATTGTCGATGCATCTATGCGAGTTCATCTCAGAATCTCTATAATTTCAGCGTTTGCTGTTGACAAATCTGACCCC
GACGAACTCCGGCGAGCGAGCGAATCGGGCCGACGAATTTCTCTTACGAACGTTCAATTCAAGACCGGAGGATGGTAGTA
TGAACACAAAAGGTTCTATCGGAGCAGATGCTACGCTCTGCAATGGATTTTGCGGCCATCCC-GCCCAGCCTAGAAATTT
CTCACGAGCAAAATACTAGCAG----------------------------------------------------------
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--------------------------------------------------------------CGCCATTGAATTCATGCT
TATCTATCTCTGACTAGGGAGTACGGGGAACCGTGCCACTCAGTTACTCCTCCCCAGTCCCCACCTAGGAAGGAAGTTGG
GAACGGTACAAACTTACTGTACGAAACCGTACGGCCCCGGCCGGCCGTACCTCGGTCACGCACGCATGATTCGCCTCGGC
GGTTGGTTGGAGCACGCTCCTTTGGCCATGCCACTTTCGCACGCCATTGCCATACCCCCGCCCGCTCGCCCTGCCCGTGC
AAGGGGTGGCTCCATAGGCGTGATGCCACAGCTAGCA-----GCGGCAGCGACAGCCAACGAGCACGGCGTCACTCCCCT
CCCGTGCCTTGCACCGTTGTGCCCCGCTTTCGAATCAGTTGTACCGCCCCTGCATCTGCATGGCCGCGGGTCCGGCCGGG
GCCTTCGCGCGCCACCGGCG----ACAGGGACCCCCCGTGCCGGCACCCTTTTCT-TCCGGTGGAATTCCACCGCGACAC
CGATGG
>chr2A_669
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----------------------------------------------------------CATGGACCACGCCCGTGCCCTC
GGAAGCACACCATCCATTAGCGAACAAA-ACGCCGCCTCGCCACCGAAAACCAGGTAAAATCACGTCAAAATAAGA--AA
AGGAAACATGTAAAAACCCAGACAAATACCC-ACACGTAATCTTCTT---------------CACAAGCCCAGCGCCGAG
CCAAGCCAGGAACCTTCCTTTCATCAGAACGAAAAACGACGAGCTGCATG-----------AAATTTTAG----------
-TAGGATCTCAAAAAAGCCGCGC---------CTCTCGTGAGGCTGACGCCTATATAAAACAGTCCACTTCCGCCACTAA
TCACACTCCTTCCGGCTTCCGTTACCGGTTCCTTCCGTCTCCTCCCATTCATTAAGGCGAGAGCCCCTCGCTCGCTCGTC
CAGACCAGGAAAGGAGCGCAAAGCAG--GCGGGCGGTTCGTTGAGATCTCGGCCGCGCCATGCCGAGGACGAGGAGGCTG
CGCGGCGGGTTCCGGCTCGGCCGCAAGCTGCTGACCGTGTGGCGGTGGGCGCTCTGCGGCCGGAGCCGGCGCCGGGGGGG
C---GGCTACCTCCGCCTCGACACGCCGTGCCCGAAGGAGGGCCGGGAGGCCAAGAAGCTGGCGCCCGTGCTGCGGTGGG
GGCGGTCGCTGGCGCGGCTCCTCAGCCTCGGCCGGACGGACCGCGGCCGGCGAACGCTCGGCGGCGGCGGCGGCG---AG
GCGGTGAAGACCCCCAAGGGGCAGGTGGCGGTGTACGTCGGCGGCGGCGGGCCCGGGGAGCCGCTCCGGTACGTGGTGCC
CGTGGTGTACTTCAACCACCCCATGTTCGGGGAGCTGCTGCGGGAGGCCGAGGAGGCGTTCGGCTTCCAGCACCCCGGCG
GCATCACCATCCCCTGCGCCGCCGCCAAGTTCGAGCGCGCCGCCGCCGTGGCCGCCGCCGGGAAGAAGGGGTTCGCCAGG
TGGTAGCATCGGGCCCGTAGGCGTAGGAGACTGGAGACCGAGACCTCGGCCCTCGCTGGCCTGA---CCGCCTCCGCTGC
GTGCGGCGGAGGCGAATGGTGACATGGTGTACAGCGCATGTGTGTTTCCATCAGCAAAGGGGCTAATTTTGTTCCATTGA
TTCATCTTCCTGCCGTTT-AACTAGACTAGTGGATGGATGCGGTTCTTTTTCTCCTTCTAGGAAAGGTTATTTACTCATC
GATGGATTCTGGATGCGTGTATGCAAGTTCTTGTCAGAATCTCTATAATCTCATCGTTTGCTGTTGACAAATCTGTCCTC
TACCAACTCCGGGGAGCGAGCGAATCGGGCCGACGAATTTCTCTTACGAACGTTCAATTCAAGACCGGAGGATGGTAGTA
TGAACACAAAAGGTTCTACCGGAGTCGATGCCACGCTCTGCAATGGATTTTGCGGCCATCCCAGCCCAGCCTAGAAATTT
CCCACGAGCAATTTCTCATGAG----------------------------------------------------------
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---------------------------------------------------------------GCCATTGAATTCATGCT
TATCTATCTCTGACTAGGGAGTACGGGGAACCGTGCCACTCAGTTACTCCTCC----TCCCCACCTAGGAAGG----TGG
GGACGGTACAAACCTACTGTACGAACCGTACGCACCCCGGCCGGCCGTACCTCGGTCACGCACGCATGATC-----CGGC
GGTTGGTTGGAGCACGCTCCTTTGGCCATGCCGCTTTCGCACGCCATTGCCATACCCCCGCCCGC---------------
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>SNPs
--------------S-----------S-----------------S-----------------------------------
---------------------S------------------S---------S------------------S----------
---S----------------------------------------------------------------------------
-----------S-SSS-S-SSSSSSSSSSS-SSSSSS-SS-SS-S-------------------------------S---
------------------------S------------------S----S-S-----------------S-----------
--------------------S-S-SSSSSSSSSSSS------------------------------------S----S--
--------------------------S-------------------------------------------------S--S
--------S--------SSS--S----------------S-----S-----S---S-----S-SSSSSS--------SS-
------S-S-----------S-------------SS-SSSSS-SSSSSSSSSS--S----------------------S-
S-S--S-------------S--------S----------------------S----------------------------
----------S----------------------S--------------------S------------S------------
-S------S-------------------------------------------------------SSSSSSSSSSSSSSSS
S-----------------------------------S-------------------------------------------
--------------------------------S----------------S------------------------------
-----------------S------------------------S-----S----------------------------S--
--------S--------S--------------------------------------------------------------
----------------------------------S---------------------------------------------
----------------------------------S----------------------------------------SSS--
--------------------------------------------S-----------------------------------
S---------------------------------------S-------S-------------------------------
-S-------------------------------------------------------SS---------------------
---------------------------------------------S-------S----------S---------------
----------------------------------S---------------------------------------------
--------------------------------------S--S----------------SSSSSS-SS-------------
-------------------S-------------------------S-S-------------------------------S
------------------------S-------------------------------------------------------
-----------------------------------S--------------------------------------------
---S----------S---SS-SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS------------------
------------------------------------------------S----------------S--------------
---------------------------------S----------------------------------------------
-------------------------------------S--------------S--S---SS-SSS---------------
-------------------------------------SSSSS------S----------------------------SS-
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-----S--------------SSSS---------S-------SS--S-SSSS--S-S----------------------S-
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>forward_560
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------------------------------------------------------------TTGGACATCCCACGGCTTAC
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>reverse_2466
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-----------------------------------------------------------------GAGGAAGGTGGGAAC
GGTAC---------------------------------------------------------------------------
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