>input_sequence_69974
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-----------------------------------------------------------------ATGGCGGCGCTGATG
ATCGGTTCCTCCTCCAAGCCTGTGCTCCTCCTCCCCGTGCTGGCCTTCGTCCTTGCATTCGTCGCCATCCCTGCGCTCAC
GACGCCGGCGCAGGGGCTCGTGTTCCACGTCGGTGGCCCGCGCGGGTGGCGCGTCCCGGACGCCAACACCAGCTATGGCT
GGTGGGCCATGAACAACCGCTTCCACGTCGCCGACGAGCTCTGTGAGTCATCCACCCATCTCATCA-TTTCTTCCATTTC
---------------CCTTACCATGTCACCAACGGCGTGCGTACTTGTGTTGTGTGTGATCCATCGCGTGATC----GTG
TGTCCTGCAACTTAGATC--TTCTTTTGATTCCAGACTTCAAGTACGAGAACGACTCGGTGCTCCTCGTCTCCCGCGAGG
AGTTCGACGCCTGCAACGCCACGGACCCCCTGTCCAGGTTCGCCGACGGCAGCACCACGGTGCGTCTCGATAGGCCGGGC
TTCTTCTGCTTCATCAGCGGTGAGCCGGGGCACTGCGAGGAGGGCCAGAGGCTCATCGTGCGCGTCATGGTGCACCCGGC
CGAGCCTGCGCCTGCGCCTGGTCCGGCCGCCTATGCGCCGGGCCAAGGCGGAGACGGGTCTGGGTCTGGCGGCGGGCACG
GTGGGTCTTCACCGGGCACGTCGTCTGGTGCCGCTGCGGTTGCTGCCGGCGGCGTCGCTCTCGCTGCAGCGATGGCCGCT
CTTTGTGTCGGTCTCGTCTTGCTGCTTCAGTGA-----------------------------------------------
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>chr3D_1_TraesCS3D01G190700
CGTTCCTCGACCAGAGGATGTCGCCATAGACCGATCAGTCTCCGTGTTGCCCCACAAATGAGATCGACGGGCGCCGCCAC
AAAGTCCACCCTCAAAACCCTGGGGTCTCCTGGTTTTTCAAAGGAAAAACTATTGACTTTCATCCACATGCAGCATGACC
TGCCGTAGGCCACCCACTATACATGGCCACGGGATACCCGGCCCGGCCGACCCGACCAGACCCTGCCCAGTCTTGCCCAC
AGGCCGGGCCTAGGCCTGAGATCTAGGCCCGATGGCTGGGTCGGGCCGAGCTTAGGCTTGTAATATTTGTGTTTTAGGGA
GGGGCCCGACCCAAGGCCCAACAGGCTTTTTCATTGTTGGGTCGGGCCTGGGCCTAATATCTAGGCCCGATGGCCGGGCC
GGGTCCAGGCCTAGGTTTTCTGCTACAGGAGAAAACCAGGTAGACATATGGCCAGGTATACCACCCACTCGTAGCATAGG
AGTC---------CTACGCGTCTACGGAAGACACAGTATACATACGGAAAAACGTACACACGTTCCCCGACCCGAGGAGA
AAAGATTCAAACGATAGCCAACCGAACCGTTTGAACATACTCCCCGTCTTCAAATCAAATCGAATCAAGAGCGCGCGCGG
CTCCATCAAAGGTAATCAGCGGAAATTAAACCGCCTCGTCACCTCCACATCCCACGTCCCCCTCCTTGATTAAGCACGTC
CGTGGCACGCCCGCCCACCTCCCCCACGAAGCAGCGAGCGGAATTCAAAGCGTGGTCAAACCTCCATCATCAAAGGGAAG
TTAACCGGCCTCCCTTGGCCTTCCCCTATAAAACCACACGCCTGGAGCGCGCGCCTGCGCTTCACATACACAGCCGCGCA
CGCCATTCCATTCCAGGCCGGAGCAACGAGAGAGAGCAG----------------CAGCCTACGGCCGCGGGCGTCCCTT
CCGCCTTCCTCCGCGTCCTGCTGCACAGCCGCCGGGCCGCTGAATCCGAGGTCGTCGAGCGGGCCATGGCGGCGCTGATG
ATCGGTTCCTCCTCCAAGCCTGTGCTCCTCCTCCCCGTGCTGGCCTTCGTCCTTGCATTCGTCGCCATCCCTGCGCTCAC
GACGCCGGCGCAGGGGCTCGTGTTCCACGTCGGTGGCCCGCGCGGGTGGCGCGTCCCGGACGCCAACACCAGCTATGGCT
GGTGGGCCATGAACAACCGCTTCCACGTCGCCGACGAGCTCTGTGAGTCATCCACCCATCTCATCA-TTTCTTCCATTTC
---------------CCTTACCATGTCACCAACGGCGTGCGTACTTGTGTTGTGTGTGATCCATCGCGTGATC----GTG
TGTCCTGCAACTTAGATC--TTCTTTTGATTCCAGACTTCAAGTACGAGAACGACTCGGTGCTCCTCGTCTCCCGCGAGG
AGTTCGACGCCTGCAACGCCACGGACCCCCTGTCCAGGTTCGCCGACGGCAGCACCACGGTGCGTCTCGATAGGCCGGGC
TTCTTCTGCTTCATCAGCGGTGAGCCGGGGCACTGCGAGGAGGGCCAGAGGCTCATCGTGCGCGTCATGGTGCACCCGGC
CGAGCCTGCGCCTGCGCCTGGTCCGGCCGCCTATGCGCCGGGCCAAGGCGGAGACGGGTCTGGGTCTGGCGGCGGGCACG
GTGGGTCTTCACCGGGCACGTCGTCTGGTGCCGCTGCGGTTGCTGCCGGCGGCGTCGCTCTCGCTGCAGCGATGGCCGCT
CTTTGTGTCGGTCTCGTCTTGCTGCTTCAGTGATCAGTTTGCTCTTCTAGTAGATAGTCAGGTTTTATTATTGAGGTTTA
ATCAATTCCTTCTCTATTAGAGTTCATCCGGTGGTACTAGTGATTCGTGATATGGTAC----TATTATCATAATTAGTTT
GGTTATCCTGTGTAATGACAATATTGTTTGGCTTTCTTCGATCCCTATGACTGTATTTGGATTATATCTACTACTACTAG
TATTCCTTGAATCTTATGCTAGTGCGATACTGTGATCCGTGGTA-ACTTTTCGA-GTTTACATCAATGGT----------
TACAAGTTGTTCGGTGAACATAACTGAAAAGACTAAAAAACGATACGAGTTTACATTTGTCGTGATTGGTTTTGACTGCA
CAAGTCGAGAAAGATGCAAACTGCCATATCAAACATGTGAGAACGGCACCAGAATTTAGTCCCATTTCATAAATGCTTGA
AAACGTCCAGGGTAC---TATATGTACAAGTTGTTGCACATCCATGTCTCAGTTAGTGAAATATATACACTGATCGGTCA
AGAGTGTCTACCATGGCTCAGAATTTTTGGTCCAGTAACTTGCGGCAGGTTTGTGGCTGTCCCAGCCATCCTCTGCTAAA
ATTAGGTTTACTCGTGCCGTGAGAGTGTTCACTGCGTCGTCCTCCAACATCTCCAGTGGATTGGTCCGGGGCTGTCCAAC
CTGCAAGGAATAGATGTAGAGTGGCATTTAGAGGCGGTGTAGTATTTACAATGGCTGAATGCAATATTTGAAGATGAAAT
ACCATGGCATTTTGGTACGACGTTAAGTACTGCAGGCAATCTTTGTAGTAGCCACAGTGGTACAGAAGGGCAGCATAGTC
CCTAAGCTCACAGGGATTGTGATTCAGTAGGATCAATCTCTCGCAAGCTGCCATCAAGATGCATGGTACGAATGAACCTG
GTCAGTGACTGCTAGAAAATGCAGATTTGGAGAAACCAGGACTTAATACAGTG---GAAAAGAAAGGCAATGGCCTATCT
GTTTCCAAAATTCTT
>chr3A_443
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------------------------------------------GACATATGGCCAGGTATACCACCCACTCGTGGCGTAGG
AGTCCTACGCCGGCTACGCGTCTACGGGAAACACAATATACATACGGAAAAACGTAGACACGTTCCCCGGCCCGAGGAGA
AAAGATTCAAACGATAGCCAACCGAACCGTTTGAACATCCTCCCCGTCTTCAAT-----TCAAATCAAGAGCGCGCGCGG
CTCTATCCAAGGTAATCAGCGGAAACTAAACCGCCTCTTCACCTTCACATCC----TCCCCCTCCTTCATTAAGCACGTC
CGTGGCACGCCCGCCCACCTCCCCCACGAAGCAGCGAGCGGAATTCAAAGCGCGGTCAAGCCTCCATCATCAAAGGGGAG
TTACCCGGCCTCCCTTGGCCTTCCCCTATAAAACCACACGCCTGGAGCACGCGCCTGCGCTTCACATACACAGCCGCGCA
CGCCATTGCATTCCAGGCCGGAGCAACGAGAGAGAG-AG----------------CAGCCTACGGCCGCGGGCGT-----
--GCCTTCCTCCGCGTCCTGCTGCACCGCCGCCGGGCCGCCGAATCCGAGGTCGTCGAGCGGGCCATGGCGGCGCTGATG
ATCGGTTCCTCCTCCAAGCCTGAGCTCCTCCTCCCCGCGCTGGCCTTCGTCCTTGCATTCGTCGCCATCACCGCGCTCAC
GACGCCGGCGCAGGGGCACGTGTTCCACGTCGGTGGCCCGCGCGGGTGGCGCGTCCCGGACGCCAACACCAGCTATGGCT
GGTGGGCCATGAACAACCGCTTCCACGTCGCCGACGAGCTCTGTGAGTCATCCACCGATCTCATCGTTT-CTTCCATTTC
CTGCCACACAATTACCCTTACCATGTCACCAACGGCGAGCGTACTTGTGTTGTGTGTGATTACTCACAGGGTCGTGTGTG
TGTCCTGCAACCT-GATC--CTGTTTTGATTCCAGACTTCAAGTACGAGAACGACTCGGTGCTCCTCGTCTCCCGCGAGG
AGTTTGACGCCTGCAACGCCACGGACCCCCTTTCCAGGTTTGCCGACGGCAGCACCACGGTGCGTCTCGATAGGCCGGGC
TTCTTCTGCTTCATCAGCGGTGAGCCGGGGCATTGCGAGGAGGGCCAGAGGCTCATCGTGCGCGTCATGGTGCACCCGGC
CGAGCCTGCGCCCGCGCCTGGTCCGGCAGCCTATGCGCCAGGCCAAGGCGGAGACGGCTCTGGGTCTGGCGGCGGGCACG
GTGGGTCTTCACCGGGCACGTCGTCTGCTGCCGCTGCGGTTGCTGCTGGCGGCGTCGCTCTCGCTGCAGCGATGGCCGCT
CTTTGTGTCGGTCTCGTCTTGCTGCTTCAGTGATCAGTTTGCTCTTCTACTAGATAGTCAGGTTTTATTATTGAGGTTTA
ATCAATTCCTTCTCTATTAGAGTTCATCCGGTGGTACTAGTAATTCGTGATATGGTAC----TATTATCATAATTAGTTT
GGTTATCCTGTGTAATGACAATATTGTTTGGCTTTCTTCGATCCCTATGACTGTGTTTGGATTACATCTA-TACTAGTAG
TATTCCTTGAATCTTCTGCAAGTGTGATACTGTGATCCGTGGTAAACTTTTCGA-GTTTACATCAATGGTACATATCTCG
TACAAGTTCTTCGGTGAACATAACTGAAAAGACTACAAATTGATACGAGTTA----------------------------
-------------ATGTAAAGTGCCATATCAAACATGTGAGAACGGCACCAGGATTTAGTCCCATTTCATAAATGCTTGA
AAACGTCCAGGGTACAATTATATGTACAAGTTGTTGCACATCCATGTCTCAGTTAGTGAAATATATACACTGATCGGTCA
AGAGTGTCTACCATGGCTCAGAGTTTTTGGTCCAGTAACTTGCAGCAGGTCTGTGGCTGTCCCAGCCATCCTCTGCTAAA
ATTAGGTTTACTCGTGCCGTGAGAGTGTTCACTGTGTCGTCCTCCAACATCTCCAGTGGATTGGTCCGGGGCTGTCCAAC
CTGTAAGGAATAGATGTAGAGTGGCATTTAGAGGCGGTGTAGTATTTACAATGGCTGAATGCCAGATTTGAAGAT-AAAT
ACCATGGCAATTTGGTACGATGTTAAGTACTGCAGGCAATCTTTGTAGTAGCCACAGTGGTACAGAAGGGCAGCATAGTC
CCTAAGCTCACAGGGATTGTGATTCAGTAGGATCAGTCTCTCGCAAGCTGCCATCAAGATGCATGGTATGAATGAACCTG
ATCAGTGACCGCTAGAAAATGCAGATTTGGAGAAAACGGGACTTAGGGTAAATACAGAAAAGAAAGGCAATGGCCTATCT
GTTTCCAAAATTCTT
>chr3B_564
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------------GATAGCCAACCGAACCATTTGAACATACACCCCGTCTTCAAATCGGG-----TCAAGAGCGCGCGCGG
CTCTATCAAAGGTAATCAGCGGAAATGAAACCGCCTCGTCACCTTCACATCCCACGTCCCCCTCCTTCATTAAGCACGTC
CGTGGCACGCCCGCCCACCTCCCCCACGAAGCAGCGAGCGGAATTCAAAGCGTGGTCAAACCTCCATC---AAAGGGAAG
TTACCCGGCCTCCCTTGGCCTTCCCCTATAAAACCACACGCCTGGAGCGCGCGCCTGCGCTTCACATACACAGCCGCGCA
CGCCATTGCATTCCAGGCCGGAGCAACGAGAGAGAG-AGAGAGAGAGAGCAGCAGCAGCCTAGGGCCGCGGGCGTCCCTT
CCGCCTTCCTCCGCGTCCTGCTGCACCGCCGCCGGGCCGCTGAATCCGAGGTCGTCGATCCGGCCATGGCGGCGCTGATG
ATCGGTTCCTCCTCCAAGCCTGTGCTCCTCCTCCCCGCGCTGGCCTTCGTCCTTGCATTCGTCGCCATCCCTGCGCTCAC
GACGCCGGCGCAGGGGCTGGTGTTCCACGTCGGTGGCCCGCGCGGGTGGCGCGTCCCGGATGCCAACACCAGCTATGGCT
GGTGGGCCATGAACAACCGCTTCCACGTCGGCGACGAGCTCTGTGAGTCATCCAGCGATCTCATCA-TT-CTTCCATCTC
---------------CCTTACCATGTCACCAACGGCGTGCGTACTTGTGTTGTGTATGATTCATCACATGATC----GTG
TGTCCTGCAACCT-GATCTTTTCTTTTGATTCCAGACTTCAAGTACGAGAACGACTCGGTGCTCCTCGTCTCCCGCGAGG
AGTTCGACGCCTGCAACGCCACGGACCCCCTGTCAAGGTTCGCCGACGGCAGCACCACGGTGCGTCTCGATAGGCCGGGC
TTCTTCTGCTTCATCAGCGGTGAGCCGGGGCATTGCGAGGAGGGCCAGAGGCTCATCGTGCGCGTCATGGTGCACCCGGC
CGAGCCTGCGCCCGCGCCTGCTCCGGCCGCCTATGCGCCAGGCCAAGGCGGAGACGGCTCTGGGTCTGGCGGCGGGCACG
GTGGGTCTTCACCGGGCACGTCCTCTGGTGCCGCTGCGGTTGCTGCCGGCGGCGTCGCTCTCGCTGCAGCGATGGCCGCT
CTTTGTGTCGGTCTCGTCTTGCTGCTTCAGTGATCAGTTTGCTCTTCTAGTAGTTAGTCAGGTTTTATTATTGAGGTTTA
ATCAATTCCTTCTCTATTAGAGTTCATCCGGTGCTACTAGTCATTCGTGATATGCTAGTACTTATTATCATAATTAGTTT
GGTTATCCTGTGTAATGACAATATTGTTTGGCTTTCTTCGATCCCTATGACTGTATTTGGATTATATCTACTACTACTAG
TAATCCTTGAATCTTATGCTACTGCGATACTGTGATCCGTGGTAAACTTTTCGAGGTTTACATCAATGGTTAATATCTCG
TACAAGTTCTTCGGTGAACATAACTGAA--GACTAAAAATCAATATGAGTTTACATTTGTCGTGATTGTTTTTGACTGCA
CAAGTTGAGAAAGATGCAAA----------------GTGAGAACGGCACCAGAATTTAGTCCCATTTCATAAATGCTTGA
AAACGTCCAGGGTACAATTATATGTACAAGTTGTTGCACATCCATGTCTCAGTTAGTGAATTATATACACTGATCGGTCA
AGAGTGTCTACCATGGCTCAGAATTTTTGGTCCAGTAACTTGCAGCAGGTCTGTGGCTGTCCCAGCCATCCTCTGCTAAA
ATTAGGTTTACTCGTGCCGTGAGAGTGTTCACTGCGTCGTCCTCCAACATCTCCAGTGGATTGGTCCGGGGCTGCCCAAC
CTGTAAGGAATAGATGTAGAGTGGCATTTACAGGCGGCGTAGTATTTACAATGGCTGAATGCAAGATTTGAAGATGAAAT
ACCATGGCATTTTGGTACGACGTTAAGTACTGCAGGCAATCTTTGTAGTAGCCACAGTGGTACAGAAGGGCAGCATAGTC
CCTAAGCTCACAGGGATTGTGATTCAGTAGGATCAATCTCTCGCAAGCTGCCATCAAGATGCATGGTATGAATGAACCTG
GTCAGTGACTGCTAGAAAATGCAGATTTGGAGAAACAGGGACTTAG---------AGAAAAGAAAGGCAATGGCCTATCT
GTTTCCAAAATTCTT
>SNPs
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS------------------------------S--S----
---------------------------S-S-----S--------------------S------------S----------
--------------------------------------------------------SSS--S------------------
---S----------------------------------------S----------------------S------------
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---S----------------------------------------------------------------------------
-------S----------------------------S-------------------------------------------
--------------------------S-----------------------------------------------------
-------------------------------------S------------------------------------------
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--------------------------------------------------------S------------S----------
------------------------------------------------------------S----S-S------------
-----------S-S------------------------------------------------------------------
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--------------------------------S-----------------------------------------------
------------S--------------------------S-----------------S----------------------
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-----------------------------------------S--------------------------------------
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--------S------------------------------S----------------------------S-----------
-----S--------------S-----------------------------------------------------------
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-------------------------------------------S------S-----------------------------
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---S------------------------------------------------------------S---------------
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--------------------------------------------------------------------S-----------
-------------------------------------S-------SSSS-SSS---------------------------
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>forward_510
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----------GTCCTACGCGTCTACGGAAG--------------------------------------------------
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>reverse_1348
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-------------------------------------------------------------------GTGATCGTGTGTC
CTGCAAC-------------------------------------------------------------------------
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>forward_685
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-------------------------TTAAACCGCCTCGTCACCTC-----------------------------------
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>reverse_2709
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--------------------------------------------------------------------CGAATGAACCTG
GTCAGTGAC-----------------------------------------------------------------------
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