>input_sequence_69951
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------------------------ATGGCGCTCATGCTCAGCCCGGCCGCGACCTTCCTCCCCG---TCGCCGGCAAGCC
---------CGCCGCCGCCATGCGGAACCTCCTCTTCGGCACCAGCAGCAAGGGAAGAAGCGT------------TCGCA
AGGTGGTGGCGATGGCGGACATCCTGGGCGACTTCGGGGCGCGGGACCCGTTCCCGGAGGAGATCGCGAGCAACTTCGGG
GAGAAGACGCTGGGCAACGTGGACACGCTGCACCGCATCCTCATTCCCACGCTCTCCGTGCTCTCGCTCTCCCGCGTGCC
GCTCGACGCCGACCCCGCGCCGCTCTCCGAGGAGGACGCCCGCAAGCTGCTCTTCAAGGTGGTCGGATGGCGGCTCCTCT
TCCCCAGCAAGGGCGACTCCGACGTGCTCAAGCTCGAGTGCGTCTGGAAGGTCCGCGACCAGGCCTGCGGCGACGAGCTC
ATCGCCAGGATCAACAAGACCCTCGACGGCGCCGGCCATGCCCCCGCCGCGCTCCAGTTCGAGGCGCCCAACCAAGTCAG
GGCCCAGCTCTACACGCCCTCCGTAGGTCAGTTATAG-TACCCTCTTCTCTCTTGTGCTCCAACGCAATGAGCTG---CT
GTGGTGTGCTTCTCCATGGATGATGGATTCATCGGTGAA-----CTGAACTGAT---------------CTGAAATTTG-
TGCAGGTGGGCTGAGCGCCAACGACTTCATCATCGCCGCGAGGATCGACCAGATCAAGACCAAAGATCTCCTCCCAAAGA
AGAGGGTCTGGGCATGCTAA------------------------------------------------------------
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>chr5A_1_TraesCS5A01G545700
AACGGCTGGAACTTGAGAGAGAGAAGGTGACCATTGAAGCAAAGAGAGTGACAATCAAGACGAAGCAAGTTGGGCTTGCG
AAGATCATCAAGGAGTCGAGGATCATGTTGGGCAACACTAGCATCATGGACGACAATGTCAAGGAGTGGTTCTG------
---------------CATAATGCAAAAAGACATCAATGCGCACCATGAATATTGATTCACTCAAATTTTCAACCATGTGT
TGAATTGTCGCGTTGTTTGACTTGCTGAA--TTGTCCTTTAATATTACGTTGATATTCCATATCTATCGCTGAATGTGTG
CAATATGATAAAGATAGTGAAAAATACGCCGCCAAGTACCCGGGTTTTAGCAAACAAACCCGTGTTATCCAGGGACAGGC
TAGGGACGACATTTGGTGAATGCTGTTGGAGATGA---------------------------------------------
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----------------------------CCTGTTAACGTGCACTTCTAGAATTAGAATTATACTCACCCGCAAAAAAAAA
AAAA---------TATATCACTCGCACCGTCCTGATTTTTTTGTCACAGAAATTGATG----------------------
-------------------------------------------------------TATCTAAAATTAAAAGTACATCTAG
ATACAGTTACAGTTTTGCCAAGTGTCAGTCGACTGAGACTTTGTTGTGTGTCTTAGTCAATACTATTTTTCTTTCATTTT
GTATGAAGATTCGTATAAAAAAATTCTTTTCAGTTTTTCTTTCTTCTTCTTACATACTATATCACTT-------------
-------------GACTGAGACCTAACCACATCCATACATTTATTTTTGTGACAAGTAATTCGGGCGAGTGGAGTAGTAC
GCAAAAGAGAGGAGACGATGAACACCAGAAAGCATTTACATTATCCTTGCTCCGG--GCA-------GTGTATTATTAGA
CGTTGGATCGAGAAGAGGCGAGAAGCA-AGAAACCAACAAATTGTGTGGTGATAAAAGGAAGA--AGGCTTCAAGGGACG
GCCAGATAAGAAGCAAGCTCCTCCGTCC----ATTGCTTCCCCCAGCCGCGCATCATCCATCCATCCATCCGTTCCTCTC
TCCTTCCTTCCTGTCCACTACACCATGGCGCTCATGCTCAGCCCGGCCGCGACCTTCCTCCCCG---TCGCCGGCAAGCC
---------CGCCGCCGCCATGCGGAACCTCCTCTTCGGCACCAGCAGCAAGGGAAGAAGCGT------------TCGCA
AGGTGGTGGCGATGGCGGACATCCTGGGCGACTTCGGGGCGCGGGACCCGTTCCCGGAGGAGATCGCGAGCAACTTCGGG
GAGAAGACGCTGGGCAACGTGGACACGCTGCACCGCATCCTCATTCCCACGCTCTCCGTGCTCTCGCTCTCCCGCGTGCC
GCTCGACGCCGACCCCGCGCCGCTCTCCGAGGAGGACGCCCGCAAGCTGCTCTTCAAGGTGGTCGGATGGCGGCTCCTCT
TCCCCAGCAAGGGCGACTCCGACGTGCTCAAGCTCGAGTGCGTCTGGAAGGTCCGCGACCAGGCCTGCGGCGACGAGCTC
ATCGCCAGGATCAACAAGACCCTCGACGGCGCCGGCCATGCCCCCGCCGCGCTCCAGTTCGAGGCGCCCAACCAAGTCAG
GGCCCAGCTCTACACGCCCTCCGTAGGTCAGTTATAG-TACCCTCTTCTCTCTTGTGCTCCAACGCAATGAGCTG---CT
GTGGTGTGCTTCTCCATGGATGATGGATTCATCGGTGAA-----CTGAACTGAT---------------CTGAAATTTG-
TGCAGGTGGGCTGAGCGCCAACGACTTCATCATCGCCGCGAGGATCGACCAGATCAAGACCAAAGATCTCCTCCCAAAGA
AGAGGGTCTGGGCATGCTAATGGCGACCGCCCATGCCA-TCTTGTTCCTCTTTCTTTGCATTGCATACATACACAGTTTT
GTTTCATGGAATGGAAGCCAACCTATCCACCATTGTAGCTCCACCCCTAGTGTTTAATGACGATGATGATGATGCCATCG
CCATTTTG-CCAATCAAATCAAATGATTTCTCAACTTCTTAGGTTCTTCCGAATGCGAGGCACGATTACAACAACACTTG
TATAATTACT-AAAATGTCAAGAAATT---------------CATTAGCTATTTAAATGCTACTGAT-----CTGTACTT
GCTGAAGAAGA-AAGAGATCACTTGATGAGGTTGGTGATGGCGCCGGCGATGATGGCGATCTGGATGCAGTCGACGGTGT
GCAGGGCCAGCGGCTGAGGCAGGGTCACGCCGGCGGTCGCGAACGCGGCGTTGCACAGCTGCGTCTGCGCCAGGGCCTCG
TCGAGCCTCTGCTTGGCCGCGGGGTAGGCGTGGTTGTTGATCTGGTCGTGCGCGTTGGCGAAGCACATGCCCACGTCCTT
GTAGAGCGTGGCGCACTTGGCGAGCGCCGGCTTCATGCGCACATTGGGGTCGGCGGCCTCCTGGGCCTTGACGTCGGCGG
CGGCGAGGTTGGCGTTGTCGACGCCGACGAGCGAGGCCACCTTGGCCAGGCCCCGGGCGTCCGCCGCCTCGAGGCTGTCG
CGGTGGCTGCCGAGCTTTGACATGCACAGCTCCACGTTGACGCGCACGTCACTGGCCGCGGCCGCCTTGCACGTGTCCGC
CACCGCCGCGTTGACGGTGCGGGCGCTCAGGATCAAGGCCGCCGCCGCCAGCACGGTGGAT---AGAGCCGTCGTCATCG
TCGTCGCTGTCTTCATTGATTCAGAAGTCTTCTTGTTTGCCAAAAATAACTTGTTAAAATTATGAGGG------AAGCAA
AGCCAAATAAGGATGAGGCTGGCATGGCAGAGCGGAGAAGAGCCATTATCGGAGTCTTCTGCCCTGCCTGGCGATGCCCA
TGGCTTCTCAATA
>chrUn_1
AATGGCTAGAACTT--GAGAGAGAAGGTGACCATTGAAGCAAAGAGGGCGACAATCAAGACCGAGCAAGTTGGGCTTGTG
AAGATCATCAAGGAGTCGAGGATCATGCTGGCCAACGCTAGCATCATGGACGGCAATGCCAAGGAGTGGTTCCACATAAG
GAGGGAATGGTTCCCCATAATGCAAAAAGGCATCAGTGCA-----------------------------CAACCATATTT
TGAATTGCCGTGTTGTTTGACTTGTTGAGTTTTGTCCTTTAATATTATGATGAGATTCCATATTTATCAGT---------
-----------------------------------GCACCCGGGTTTTAGCCGACAAACCCGTGTTATCCACGGACAGAC
GAGGGACGACATTTGGTGAATACCGTTGGAGATGA---------------------------------------------
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----------------------------CCTGTTAACGTGCACTTCTAGAATTAGA-TTGTAGTCACCCGCAGAAAAAGA
AAAGAATTAGAACTATACCACCCCCATCGTCTCGAATTTTTTGTCATAGAAATTCATG----------------------
-------------------------------------------------------TATCTAAAATTAAAAATACGTCTAG
ATACATTTACAGTTTTGCCATCTCTTAGTCGACCGGGACCTCGTTATGTTT--TAGTCGATACTTTCTTTCTTTGATTTT
GCATGGAGATTCGTACAGAAAATTTCTTTTCAGTTTTTCTTTTTTCCTCTTACATACTATATCACGTGACTGAGACTTGG
TTAAGTCTGAGTCGACTGAGACCTAGCCACACCCATATATTTA------------GTAATTCGGACGGAGGTAGTAGTAC
ACAAAAGAGGTGACCGTC--AACACTGGAAAACATTTACATTATCCTTGCTCCGG--GCAGTGCAGCGTGTATTATTAGA
CGTTGGATCGAGAAGAGGCGAGAAGCA-AGAAACCAACAAATTGTGTGGTGATAAAAGGAAGAGAAGGCTTCAAGCGACG
GCCAGATAAGAAGCAAGCTCCTCCGTCC----ATTGCTCCCCCCAGCCGCGCATCATCCATCCATCCGTTCCACTG----
--------------------CACCATGGCGCTCATGCTCAGCCCGGCCGCGACCTTCCTCCCCGTCGTCGCCGGCAAGCC
CACCA---------CCGCCATGCGGAACCTCCTCTTCGGCACCACCACCAGCACCACCAGCGGTCACCGGAGCACTCGCA
AGGTGGTGGCGATGGCGGACATCCTGGGCGACTTCGGCGCGCGGGACCCGTTCCCGGAGGAGATCGCGAGCAACTTCGGG
GAGAAGACGCTGGGCAACGTGGACACGCTGCACCGCATCCTCATCCCCACGCTCTCCGTGCTCTCCCTCTCCCGCGTCCC
GCTCGACGCCGACCCGGCCCCGCTCTCCGAGGAGGACGCCCGCAGGCTGCTCTTCAAGGTGGTCGGCTGGCGGCTCCTCT
TCCCCAGCAAGGGCGACTCCGACGTGCTCAAGCTCGAGTGCGTCTGGAAGGTCCGCGACCAGGCCTGCGGCGACGAGCTC
GTCGCCAGGATCAACAAGGCGCTCGACGGCGCCGGCCACGCCCCCGCCGCGCTCCGGTTCGAGGCGCCCAACCAAGTCAG
GGCCCAGCTCTACACGCCGTCCGTAGGTCAGTTACAG-TAGCCTCTTCTCTCTTCTGCTCCGCCGCAATGAGCTG---CT
GTGGTGTGCTTCTCCATGGATGATGGATTCATCGGCGAA-----CTGAGCTGAACTGATATGAATTGGACTGACATTTG-
TGCAGGCGGGCTGAGCGCCAACGACTTCATCATCGCGGCGAGGATCGACCAGATCAAGACCAAAGATCTCCTCCCAAAGA
AGAGGGTCTGGGCATGCTAATGGCCGCAGATTCCCCTCTTCTTGCTCCTCTTTGCAT-------ACACACACACAGTTTT
GTTTCATGGAA----AGCCAATGGATCCATGTTTGTAGCTCTACTGCTAGTGTTTGATGATGATGATG-----GCG-TCG
CCATTTTG-----TCCAATCAAATGATTTCTCAACTTGTTGGGTTCTTCCGAATGCGAGGCACGATTACAACAACACTTA
CAG--CTACAAAAATTGTCAAGAAACGAGTTCACCGTCATGCCAATAGCTATTTAGATGCTACTGTACTCAACTGTACTC
GCTGAAGAAAGGAAGAGATCACTTGATAAGGTTGGTGATGGCGCCGGCTATGATGGCGATCTGGATGCAGTCGACGGTGT
GCAGGGCCAGCGGCTGAGGCAGGGTCACGCCGGCGGCCGCGAACGCGGCGTTGCACAGCTGCGTCTGCGCCAGGGCCTCG
TCGAGCCTCTGCTTGGCCGCGGGGTAGGCGTGGTTGTTGATCTGGTCGTGCGCGCCCGCGAAGCACATGCCCACGTCCTT
GTAGAGCGTGCCGCACTTGGCGAGCGCGGGTTTCATGCGCACGTTGGGGTCGGCGGCCTCCTGGGCCTTGATGTCGGCGG
CGGCGAGGTTGGCGTTGTCGACGCCGACGAGCGAGGCCACCTTGGCCAGGCCCCAGGCGTCCGCCGCCTCGAGGCTGCCG
CGGTGGCTGCCGAGCTTCGACATGCACAGGTCCACGTTGACGCGCACGTCGCTGGCCGCGGCCGCCTTGCATGTGTCCGC
CACCGCCGCGTCGACGGTGCGGGCGCCCATGATCAAGGCCAGCGCCGCCAGCACGACGGCGAGG---GCCGTCGTCATCG
TCGTCGCTGTCTTCATTGATTCGAAAGTCTTCTTGTTTGCCAAAAATAACTTGTTAAAATTATGAGGGAAGCAAACT--A
AGCTAAATAAGGATGAGACTGGCATGGCAGAGCGGAGGGGAGCCATTGTCGGAGGCTTCTGCCCTGCCTGCCGATGCCCA
TGGCTTCT-----
>chr4B_9
--------GAACTT--GAGAGAGAAGGTGACCATTGAAGCAAAGAGAGCGACAATTAAGACCGAGCAAGTTGGGCTTGTG
AAGATCATCAAGTAGTCGAGGAC---------------------------CGGCAATGTCAAGGAGTGGTTCTG------
---------------CATAATGAAAGAAGACATCAATGCACAACGTGTATATTGATTCATTCGATTTCTCAACCATGTGT
TGAATTGTCGTGTTGTTTGACTTGTTGAG--TTGTCCTTTAATATCACATTGAGATTCCATATTTATCTTTGAATGTGTG
CAATATAATAAAAGTAGTGAAAATTACGCCGCCGAGCACCCTGGTTTTAGCATACAAACCCGTGTTATCTATGGACAGAT
GAGGGACAAAATTTGGTGAATGCCGTTGGAGATTACCTTTTTTTGAAAACAGAACTCTAACTTTATTCATTTGTAATAAA
TAGTACATCGTTTGTGAGAAACATTACAATTTCGTTTAAAGGCTCCTCAAACCAATCAGAAGTCAAAGAAAATCTAGCTA
ATCTAATAAGCTCGTGAGCTATTTTATTTGCTTCCCTATTAAAGTGCTTAAAACTAGTAGTAATGAAATCATAGGCATAA
CGAAAACAGTCTTCGAAGATTGCTGCCGCCGCACCCGCCGACTGCCCTCCATCATTCATAGAATCAATCACCTCCATATT
ATCCGAATTTACGATAGTGTGATTGCATCCCGCCCTTTGCGCCAATGTTAGACCAAATTTGAGAGCTCTAGCCTCCGCCA
TCAGCACATCCGCGCAAAAATCTTTTCTCTCATTCCCTCCAGCAATAAACCTGCCTCTGTCATCTCTAAGCACTGCTCTC
ATTGTACCCCTAAGAAGGTCGTGATCAAAGGAAGCATCAACGTTGAGTTTAACAAAACCTCTTGGAGGGCAAGACCAACT
CTCCTTCACAGATGCCTTGGTGGATAATGCATTAACAAAATATGTGTTAAGGGCAAGGATTTTCCATTGAAATCTGCGTT
ACATTTTGTATTTTCTCATTGTTAACCAACTTCCGTCTTTCCCACCATAGGTACCTTGCTGAGATAGCAATCATCTCACA
AATCTTGATCTGGTAGAAGTAGTAGGTACTCCAGCACTACCTCTCCTGCACGATCAATCTCGCAAGGTTTTTCAATGATA
TCATCCAGTCCCAGTCTTTTCCAAACCTCCTGGTAACATGCACTTCTAGAATTAGAACTATACT----------------
-------------------ACTCCCTCCGTCCCAAGTTTTTCGTCGCGGAAATGGATAAAAGCTTCCAGAATTAGAACTA
GACTACTCCGTCCAGCCCAAGTTTTTTTGTCGCGGAAATGGATGAAGATTGATATTACCTAGAATTAAAAATACGTCTAG
GTACATTCATTTTTGTGACA------------------------------------------------------------
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------------------------------------------A------------GTAATTCCGTCGGAGGGAGTAGTAC
ACAAAAGAGGAGATGATGAGAACAGT--AAAACATTTACATTATCCTTGCTCCGGCGGCAGTGCAGTGTGCATTATTAGA
GGTTGGATCGAGAAGAGGCGAGAAGCAAAGAAGCCAACAAATTGTGTGGTGATAAAAGGAAGAGAAGGCTTCAAGCGACG
GCCAGATAAGAAGCAACCTCCTCCGTCCGTCCATTGCCTCCCCCAGCCGCGCATCATCCATCCATCCGTCCCAGTG----
--------------------CGCCATGGCGCTCATGCTCAGCCCGGCCGCGACCTTCCTCCCCGTCGCCACCGGCAAGCC
CACCGCCACCGCCGGCGCCATGCGAAGCCTCCTCTTCACCACCACCAGCGGCACCGCCAGCGGCCACCGGAGCAGCAGGA
AGGTGGTGGCGATGGCGGACATCCTGGGGGACTTCGGCGCGCGGGACCCGTTCCCGGAGGAGATCGCGAGCAACTTCGGG
GAGAAGACGCTGGGCAACGTGGACACGCTGCACCGCATCCTCATCCCCACGCTCTCCGTGCTCTCCCTCTCCCGCGTCCC
GCTCGAAGCCCACCCGGCGCCGCTCTCCGAGGAGGACGCCCGCAGGCTGCTCTTCAAGGTCGTCGGATGGCGCCTCCTCT
TCCCCGGCAAGGGCGACTCCGACGTGCTCAAGCTCGAGTGCGTCTGGAAGGTCCGCGACCAGGCCTGCGGCGACGAGCTC
ATCGCCAGGATCGGCAAGGCGCTCGACGGCGCCGGCCATGCCCCCGCCGCGCTCCTCTTCGAGCCGCCCAACCAAGTCAG
GGCACAGCTCTGCACGCCCTCCGTAGGTCAGTCGGCGTTAACCTCTTCTCTCTTCTGCTTCTGCCCTGCCACAATGAACT
GTGGTGTGCTTCTCCATGAACGATGGATTCATCGGTGAACTGAGCTGAATTGAA---------------CTGAAATTTTA
TGCAGGTGGGCTGAGCGCCAACGACTTCATCATCGCGGCGAGGATCGACCAGATCAAGACCAAAGATCTCCTCCCAAAGA
AGAGGGTCTGGGCATGCTAAT---------CCATGGCG-TCTTGTTCCTATTTCTTTGCATTGCACACATACACAGTTTT
GTTTCATGGAA----AG--------------TTTGTAGCTCTACTGCTAGTGTTTGATGATGATGATG-----GCGATCG
CCATTTTGTCCAATCAAATCAAATGATTTCTCAACTTGCCGGGTTCTTCCGAATGCGGGGCGCGATTACAACAACGCTAA
TATGACTAAAAAAAATGTCAAGAAACGAGGCCACCGCCGTGCCAACAGCTATTTAGATGCTACTGTACTTA---------
GCTGAAGAAAAGGAGAAGTCACTTGATGAGGTTGGTGATGGCGCCGGCGATGATGGCGATCTGGATGCAGTCGACGGTGT
GCAGGGCCAGCGGCTGCGGCAGGGTCACGCCGGCGGCCGCGAACGCGGCGTTGCACAGCTGCGTCTGCGCCAGGGCCTCG
TCCAGCCTCTGCTTGGCCGCGGGGTAGGCGTGGTTGCTGATCTGGTCGTGCGCGCCCGCGAACCACATGCCCACGTCCTT
GTAGAGCGTGCCGCACCTGGCGAGCGCCGGCTTCACGCGCACGTTGGGGTCCGCGGCCTCCTGGGCCTTGACGTCCGCCG
CGGCGAGGTTGGCGTTGTCGACGCCGACGAGCGAGGCCACCTTGGCCAGGCCCCAGGCGTCCGCCGCCTCGAGGCTGCCG
CGGTGGCTGCCCAGCTTCGACATGCACAGGTCCACGTTGACGCGCACGTCGCTGGCCGCGGCCGCCTTGCACGTGTCTGC
CACCGCCGCGTCGACGCTGCGGGCGCCCAGGATCAAGGCCGCCGCCGCCAGCACCGTGGCGGTGAGAGCAGGCGTCGTCG
TCGTCGATGTCTTCATTGATTCGAAACTCTTCTTGTTTGCCAAAAATAACTTGTTAAAATTATGAGGGAAGCAAAAGCAA
AGCTAAATAAGGATGAGGCTGGCATGGCAGAGCGGAGGGGAGCCATTATCGGAGGCTTGTGCCCTGCCTGGCGATGCCCA
TG-----------
>SNPs
--S----S------SS--------------------------------S------------SS---------------S-
---------------------------S---S----S---------------S---------------------------
---------------------------------------S--S-S--S-----------S--S-S--S------------
----------S-------------S---S------------------------S---------S----SS----------
------S-----SS---------S---------S--S---------------S------------------S------S-
S----------------------S--------------------------------------------------------
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------------------------------------------------------------------------S-----S-
---S-------------S-----S--------S--S--------------------------------------------
----------------------------------------------------------------------S---S-----
-----S--------------SS-S-S-------S-S---S-S---S---S-SS-----S-----S-S-------S-----
-S---S---------S-S----S-------------------S---S------------------S--------------
-------------------------S-----S-----S-----SSSSSSSSSSSS---------S--SSS----------
S--------SS--SSSSSS------SS----S------------------------------------------------
---------------------------------------------------------------------------S----
-------------------------------------------------------------------S---SSSSSSSSS
SSSSSSSSSSSSSSSSSSSS------------------------------------------------------------
--------------------------------------------S-----SSSSS-SS----S-----------------
-------------------------------------S------------------------------------------
--------------------------------------------S--------------------S-----------S--
---------------S----------------------------S-----------------------------------
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------------------S-S----------------------------------S------------------------
----------------------------------S-----S-------------S------SS-----------------
-----------------------------------------------------S--------------------------
------------------------------------S-------------------------------------------
------------------------SS-S-S-------S---------------------------S--------------
-----------SSSS------SSS-----SSS---------S--SS---------S----S-------SSSSS--S----
-------------------------------------S--S--------------------------------------S
---S-S---S---------------SS-----------------S----------S---------SS------------S
---------S----------------------------------------------------------------------
------------------------------------S-------------------------------------------
------------------------------------------------------SSS-----------------------
----------S-------------------------------S-------------------------------------
------------------------------------------------------S----------------------S--
-----------------S-----------S--------------------S-----------------------------
-----------S--------------S--------------------------------SS-------------------
----------------------SS--------------------------------------------------------
---S---------------------------------SS---------------S-------------------------
--------SSSSS
>forward_265
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-----TGTCGCGTTGTTTGACTTGC-------------------------------------------------------
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>reverse_2285
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--------------------------------------------AGCTGCTCTTCAAGGTGGTC----------------
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>forward_1474
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--------------TTGCCAAGTGTCAGTCGACT----------------------------------------------
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>reverse_3580
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-----------------------------------------------------------ATAGAGCCGTCGTCATCGTC-
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