>input_sequence_69927
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-------------------------------------------ATGCTCCGGCCATCGCCGTATTCGTCGAGGCGTCTCC
TCCAGAGCGGCGACCCCAGCCGCATCCCGGGCATCCCCCCGGCCGATCCGCCCGCCGGCGTCAGCTCGGATGTCGTCGTC
ATCCTCGCCGCCCTGCTCTGCGCGCTCATCTGCGTAGTCGGCCTCGCCGCCGTCGCGCGGTGCGCGCGCTCCCGCCGCAA
CGCCAACGCCCACGCCAACCAATCCTCGCCGTCCGGCAGCCCGGCCCACGCCCTGGCGGCCTTCGGCGGGGGCGGCGGTG
GGCATAACCATGGTACTACAACTACTACGACGACAGGCGCGTCGGGGGGCAGCGTGACGACCACCAGCAAGGGGCTCAAG
AAGAAGGCGCTCAAGGCGCTGCCGAAGCTGGCGTACGCGGACGCGGTGGCCGCGGCTGCGGCGGCGAGGGGCGCCGTGGC
GGGGGGCGAGGAGGAGGAGGGGCAGGACGGGATCCTCGCCGAGTGCGCCATCTGCCTGACGGAGTTCGGCGAGCGGGAGG
AGGTGCGCGTGATGCCGCAGTGCGGCCACGGGTTCCACGTCGACTGCGTCGACACCTGGCTGCGCTCCAACTCCTCCTGC
CCGTCCTGCCGCCGCCCCATCGTCCTCGACGACCCCGCGCCGCCCAAGCGGTGCCGCAAGTGCGAGGAGACCATCCTGGA
GGCGGTCATCG---CCTCGTCGTCGTCGGCCGGCGGCAGCCGCGGCGGCGGCCGTGGGGGATTCTTGCCGTAG-------
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>chr1B_1_TraesCS1B01G216000
CGGTTGGAGCGACTGGTTTCCTCCCCTGCTTCTGCTGGTTTNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNAAAAAAAGTGCCACGTCGGCACCTGATAAGTGGGCCCTGCCGGTCAGAT
ACACCGTCAATACATGTTTATACGCGATTTAGACCTTTTTATGACGGCTAGCCCTAGACGGTACTGACCCGTAAAAATTA
CCAAACTTGATATCAATCTTCTTCCAATGCCCCAATTGTAATAGTTCTGTACAATTAACTCTCCATCTACCCTACTCCAT
CCACAGCGAAGGCGTTTTCTTTTCTTTTATAAAGCTCCGGAGGAAATGTTTCTGAATCTGCACCCAAAACAAATCTTTAA
TATCTCCCAGAAATAAAATGCAAAATCTTAATCTCTAATTATCTTGGCGCGTCCACGTGTGCCTTTTGGGATTTTCCAGC
TGGTCGACGATACCGGCCCCGCCCCGCGCCCAACCCGCGGGAAATCGCCACGGGAGCTTCGCTACGACGCTTACCCGCCC
GCCATTAACAATCGCAACCTGCCAATACCACCA-CCCCC-TTTCGCTTCTCTCGCGTCTCGCCACAACTTTAATTTTGCG
GAAAAGGCCCC-TCCAACTACCGGCGCTGGACGAACGTGGGCGATGCTCCGGCCATCGCCGTATTCGTCGAGGCGTCTCC
TCCAGAGCGGCGACCCCAGCCGCATCCCGGGCATCCCCCCGGCCGATCCGCCCGCCGGCGTCAGCTCGGATGTCGTCGTC
ATCCTCGCCGCCCTGCTCTGCGCGCTCATCTGCGTAGTCGGCCTCGCCGCCGTCGCGCGGTGCGCGCGCTCCCGCCGCAA
CGCCAACGCCCACGCCAACCAATCCTCGCCGTCCGGCAGCCCGGCCCACGCCCTGGCGGCCTTCGGCGGGGGCGGCGGTG
GGCATAACCATGGTACTACAACTACTACGACGACAGGCGCGTCGGGGGGCAGCGTGACGACCACCAGCAAGGGGCTCAAG
AAGAAGGCGCTCAAGGCGCTGCCGAAGCTGGCGTACGCGGACGCGGTGGCCGCGGCTGCGGCGGCGAGGGGCGCCGTGGC
GGGGGGCGAGGAGGAGGAGGGGCAGGACGGGATCCTCGCCGAGTGCGCCATCTGCCTGACGGAGTTCGGCGAGCGGGAGG
AGGTGCGCGTGATGCCGCAGTGCGGCCACGGGTTCCACGTCGACTGCGTCGACACCTGGCTGCGCTCCAACTCCTCCTGC
CCGTCCTGCCGCCGCCCCATCGTCCTCGACGACCCCGCGCCGCCCAAGCGGTGCCGCAAGTGCGAGGAGACCATCCTGGA
GGCGGTCATCG---CCTCGTCGTCGTCGGCCGGCGGCAGCCGCGGCGGCGGCCGTGGGGGATTCTTGCCGTAGTAGCAGT
AGAAGAGGCGTCATGTCCCCTGGCGGGTGGGTCCAGGTCGGTGTGGGTAGTTGAGCTGCTCCTTTCTGCTGGTGGCCCAC
GCTGCAGTACTACCGCAGTGAAGTTTTTCTTCTCAAGAAATGGAAAGGAGAATAATTAGAGCTGTGA-----ATGTGACT
CTTTTCTGCAACCTTTTTCGCCCTGCACTTGCGCTACTGCTCCAGTACGTGTGGATGTGGGGAACATGACATCAGATTTG
TAAAGAGCGTGCGTGGTCTCGTGTAAAAATATA---TTTGTACTGGATATAGCTTGCTCAAAAGAGGCAAAGAAAAA-CA
TTTTACATGTGGATCCGGCAAGCTAGAAATATGCAGCTCGTGTCTGAAGATCTGTTTGGTGTGGAGAAATAGGTGGACGT
TGTGAA--------------------------------------------------------------------------
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--------------TGTGGAGTAATGACAGTTATGAAATATCGAACTTGTATGGAGAAACATGTAGAAGTCGACAATGGC
ATGAAATTGTTTCTCGT-TGGAGAGAGAAATAGGCGAAAGTTGTGGAGTAGTGGCAGGTATGAATATCAAACTTCTGGTA
CTGAAAAACATGTAGAAGTTGACAATGCAATGAAGATCTTTTTGGTGTGGAAAGAGACATAGGTGGAAGTTGTCAAGTAA
TGACAGCAGTAGCGGAGCTACAGCAGGGCTACATGGGCCGTGGCCCGCCCAGCTTTGCAGCGTTTGCTTGTATATAACAG
TCAGCTCATGGGCCCAAAAAAAGCCAGCTATAAGCATTTGTTTTGCAGTGTGGTCTGCCCAATTTTTTGCTACAAGCTCC
GCCACTGAATGACAGGTATGAAATATCAGACTTCTGGTATGGAGAAACACGTCGAAGGCTACAAAGGCACTCACAACGAC
AGGGAGACCACACTAACTTTGGAATACTCGGATCATTTGTCGCTACACCCCCTACTTTCTCTTGTGGATCTTATTACTCT
TTGGTATTTGGGCACCCTAGACGAAAGAGGTCACCTCAGAGCCACAGTCCA
>chr1A_622
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-------------------------------------------------------------TCCATCTACCCTACTCCAT
CCACAGCGAAGGCGTTTTCTTTTCTTATATAAAGCTCCGGAGGAAATGTCTCTGAATCTGCACCCAAAGTAAATC-TTAA
TCTCTCCCAAAAATAAAATGCAAAATCTTAATCTCTAATTATCCTGGCGCGTCCACGTGGGCCTTTTGGGATTGTCCAGC
TGGTCGACGATACCGGCCCC----------CAACCCGCGGGAAATCGCCACGGGAGCTTCGCTACGACGCTTACCCGCCC
GCCATTAACAATCGCAACCTGCCAACACCACCACCCCCCCTTTCGCTTCTCTCGCGTCTCGCCACAACTTTAATTTTGCG
GAAAAGGCCCCCTCCAACTACCGGCGCTGGACGAACGTGGGCGATGCTCCGGCCATCGCCGTACCCGTCGCGGCGTCTCC
TCCAGAGCGGCGACCCCAGCCGCATACCGGGCATCCCCCCGGCCGATCCGCCCGCCGGCGTCAGCTCAGATGTCGTCGTC
ATCCTCGCCGCCCTGCTCTGCGCGCTCATCTGCGTAGTCGGCCTCGCCGCCGTCGCGCGGTGCGCGCGCTCCCGCCGCAA
CGCCAACGCCCACGCCAACCCCTCCTCGCCGTCCGGCAGCCCGGCCCACGCCCTGGCGGCCTTCGGCGGGGGCGGCGGCG
GGCATAACCATGGTACCACAACTACTACGACGACAGGCGCGTCCGGGGGCAGCGTGACGACCACCAGCAAGGGGCTCAAG
AAGAAGGCGCTCAAGGCGCTGCCGAAGCTGGCGTACGCGGACGCGGTGGCCGCGGCGGCGGCGGCGAGGGGCGCCGTGGC
GGGGGGCGAGGAGGAGGAGGGGCAGGACGGGATCCTCGCGGAGTGCGCCATCTGCCTGACGGAGTTCGGCGAGCGGGAGG
AGGTGCGCGTGATGCCGCAGTGCGGCCACGGGTTCCACGTCGACTGCGTCGACACCTGGCTGCGCTCCAACTCCTCCTGC
CCGTCCTGCCGCCGCCCCATCGTCCTCGACGACCCCGCGCCGCCCAAGCGGTGCCGCAAGTGCGAGGAGACCATCCTGGA
GGCCGTCATCGCCTCCTCGTCGTCGTCGGCCGGCGGCAGCCGCGGCGGCGGCCGTGGGGGATTCTTGCCGTAGTAGCAGT
AGAAGAGCCGTCATGTCCCCTGGCGGGTGGGTCCAGGTCGGTGTGGGTAGTTGAGCTGCTCCTTTCTGCTGCTGGCCCAC
GCTGCAGTACTACCGCAGTGAAGTTTTTCTTCTCAAGAAATGGAAGGGAGAATAATTAGAGCTGTGATGTGAACGTGACT
CTTTTCTGCAACCTTTTTCGCCCTGCACTTGCGCTGCTGCTCCAGTACGTATGGATGTGGGGAACATGACATCAGATTTG
TAAAGAGCGTGCGTGGTCTCGTGTAAAAATATACTATTTGTACTGCA-ATAGCTTGCTCAAAAGAGGCAAAGAAAAAACA
TTTTACATGTGGATCCGGCAAGCTAGAAATATGCAGCTCGTGTCTGAAAATCTGTTTGGTGTGGGCGATTTG--------
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-----GGTGGAAGTTGTGGAGTAATGGCAGTTATGAAATA----------------------------------------
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>chr1D_627
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------------------------------------------------------------------CTACCCCACTCCAT
CCACAGCGAAGGCGTTTTCTTTTCTTTTATAAAGCTCCGGAGGAAATGTTTCTGAATCTGCACCCAAAATAAATC-TTAA
TCTCTCCCAAAAATAAAATGCAAAATCTTAATCTCTAATTATCTTGGCGCGTCCACGTGGGCCTTTTGGGATTTTCCAGC
TGGTTCCGCCC---------------CGCCCAACCCGCGGGAAATCGGCACGGGAGCTTCGCTACGACGCTTACCCGCCC
GCCATTAACAATCGCAACCTGCCAACACCACCACCCCCC-TTTCGCTTCTCTCGCGTCTCGCCACAACTTTAATTTTGCG
GAAAAGGCCCC-TCCAACTACCGGCGCTGGGCGAACGTGGGCGATGCTCCGGCCATCGCCGTATCCGTCGAGGCGTCTCC
TCCAGAGCGGCGACCCCAGCCGCATCCCCGGCATCCCCCCGGCCGATCCGCCCGCCGGCGTCAGCTCGGATGTCGTCGTC
ATCCTCGCCGCCCTGCTCTGCGCGCTCATCTGCGTAGTCGGCCTCGCCGCGGTCGCGCGGTGCGCGCGCTCCCGCCGCAA
CGCCAACGCCCACGCCAACCAATCCTCGCCGTCCGGCAGCCCGGCCCACGCCCTGGCGGCCTTCGGCGGGGGCGGCGGCG
GGCATAACCATGGTACTACAACTACTACGACGACAGGCGCGTCGGGGGGCAGCGTGACGACCACCAGCAAGGGGCTCAAG
AAGAAGGCGCTCAAGGCGCTGCCGAAGCTGGCGTACGCGGACGCGGTGGCCGCGGCGGCGGCGGCGAGGGGCGCCGTGGC
GGGGGGCGAGGAGGAGGAGGGGCAGGACGGGATCCTGGCGGAGTGCGCCATCTGCCTGACGGAGTTCGGCGAGCGGGAGG
AGGTGCGCGTGATGCCGCAGTGCGGCCACGGGTTCCACGTCGAGTGCGTCGACACCTGGCTGCGCTCCAACTCCTCCTGC
CCGTCCTGCCGCCGCCCCATCGTCCTCGACGACCCCGCGCCGCCCAAGCGGTGCCGCAAGTGCGAGGAGACCATCCTGGA
GGCGGTCATCG---CCTCGTCGTCGTCGGCCGGCGGCAGCCGCGGCGGCGGCCGTGGGGGATTCTTGCCGTAGTAGCAGT
AGAAGAGGCGTCATGTCCCCTGGCGGGTGGGTCCAGGTCGGTGTGGGTAGTTGAGCTGCTCCTTTCTGCTGGTGGCCCAC
GCTGCAGTACTACCGCAGTGAAGTTTTTCTTCTCAAGAAATGGAAAGGAGAATAATTAGAGCTGTGATGTGAATGTGACT
CTTTTCTGCAACCTTTTTCGCCTTGCACTTGCGCTACTGCTCCAGTACGTGTGGACGTGGGGAACATGACATCAGATTTG
TAAAGAGCGTGCGTGGTCTCGTATAAAAATATACTATTTGTACTGCATATAGCTTGCTCAAAAGAGGCAAAGAAAAAACA
TTTTAAATGTGGATCCGGCAA-----AAATATGCAGCTCGTGTCTGAAGATCTGTTTGGTGTGGAGAAATAGGTGGAAGT
TGTCTTTAAAAAATCTTTGGTACTCTTTGGCTAGGGTTTCTCGTGCCTCGTCTTCTGTGGTCTTAGGGCCATGAAGGTGT
GGTGGATCCCGGCCCTTGCCGGCAGGAGGGCTTCATTTTTTCATACTTTTTTGAGTTTTGTTAGGGTTTGTGTACTGTTT
AGAGAGTCGAGGCGGTGGCGACTCTTTGCAGATAGAATAAGGTTCTTCCCGCCTTGTCCCCATCCCGGTGATGTTTCTAG
CATCGTCGGAGAGCGTGTGGAGATTTGTCTCTGACGGATCTTGCGGGATTCAGCCGACCTTTGTCTTCGGTGGATCCACG
TGAATCTTGTCTTCGTTCGTCTATGTTCGTGTATCTACAGGTTCGATCCTTCTGATCTACGCTTCTCTTCATCGGCGGCG
GATGCTGTTCTGGTGCGCTGGTCCTATGGGGCCTTAGCACGACGACTTCCTGACTGTCTACTACAACAAGGTTTGCCCGG
CTCCGATGAAGGATGGGCGAAGATGGCGGCGCGCCTTCAGCTCGCTCCAGTGCTAGTAGTCGTCGCTAGATGATCTACGG
ACTTAGATGTATTTTTTACTTCTAGTGTTCTTTGTATTACCTTGACAGTTGAAGAATAGATTAGAAGTTATTCTTGCAAA
AAATAGGTGGAAGTTGTGGAGTAATGACAGTTATGAAATATCGAACTTGTATGGAGAAACATGTAGAAGTCGACAATGGC
ATGAAAATGTTTCTCGTGTGGAGAGAGAAATAGGTGAAAGTTGTGGAGTAGTGGCAAGTATGAATATCAAACTTCTGGTA
CGGAGAAACATGTAGAAGCGGACAATGTCATGAATATCTTTTTGGTGTGGAGAGAGACATAGGTGGAAGTTGTCAAGTAA
TGACAACAGTAGCGGAGCTACAACAAGGCGACATGGGCCATGGCCCGCCCAGCTTTGCAGCGTTTGCTTC--TATAACAG
TTAGCCCATGGGCCC-AAAAAAGCCAGCTATAAGCATTTGTTTTGCAGTGTGGCCCGCCCAATTTTTTGCTACAAGCTCC
GCCACTGAATGACAGGTATGAAATATCAAACTTCTGATATGGAGAAACATGTCGAAGGCTACAAAGGCACTCACGATGAC
AGGGAGACCACACTAACTCTGGAATACTCGGATCATTTGTCGTTACACCCCTATCTTCG-CTTGTGGATCTTGTTACTCT
TGGGTATTTGGGCACCCTTAAGAAAAGAGGTCACCTTAGAGCCATAATCCA
>SNPs
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS-------------------
---------------------------------------------------------------------S-----S----
-S-------S-------------------------------------------------S--------------------
--------------------SSSSSS------------------------------------------------------
-------------------------S------------------------------------------------------
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---------------------------------------------S----------------------------------
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---SSS--------------------------------------------------------------------------
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------S---------------------------S---------------------S-----------------------
-S--S-------------SS-------SS-----S----------------S----------------------------
-----S----------------S--S---S---------S-----------------------------SSS--------
-S---S---------S-------------------------------------S-S------------------------
----------------------------S-------S------------S------------------------S-S---
------------------S-----------------------S--------SSS---SSS------------S-------
-S----------------SS-SS-------------S-------S-S----
>forward_23
---TTGGAGCGACTGGTTTCCTC---------------------------------------------------------
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>reverse_1279
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------------------------------------------------------------------------------TG
GGCATAACCATGGTACTACA------------------------------------------------------------
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>forward_470
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--------------------------------------------------CACCTGATAAGTGGGCCCTG----------
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>reverse_2915
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----------------------------------CGAAAGTTGTGGAGTAGTGGC-------------------------
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