>input_sequence_69924
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----------------ATGGCC---------GCCCCCGCTGCCGCCCCCGGCCGCGCGTACGAGGACTTCGTGCCGCCGC
ACAACATGGTCACCGAGCCGGCGACCCACACCCTCTCCGTCGATCTCACCGCCGCAGGCACGCACCGCACCCCCCTAC--
-ATATTAGTAC--------------------------CATCGCATGAGTTGTATATGCCG-------------GGATCAG
CTTGTGTTGATTTAGTTA---CGAGGTGCCGATTGCAGGGTACAAGAAGGAGCACATCAGGGTGCAGCTGGTCCGCAGCC
ACGGGCTAGTGGTCGTGCGCGGCGAGCGCGCCGTCGCGGGCAACCGCTGGAGCCGCTTCCGGCTGGAGTTCCGCGTGCCC
GACGGCTGCGACCTCAAGGGCATCCACGCGAGGTTCGAGGGCGGCGTCGTGCGGGTCACCATGCCCGGGCTAAGGACGGG
GCCTGCGGCCGCGGTCGGCGACGTCTCCGGCAAGCAGGTGCCCCCGGCGGCCAAGGCCGATGCTTCCGGCGTTCGAGCAG
GAGACAAGGAAGATGAGAACGTGCAGAAACAGCCGGTGGAGGAGCGCGGGGCCGACGCGGTGAAAGATAGTG--------
-------------------GCCGCCTTGATCAAGGACAAGGTACCCCTGCCGACGGCGTCCAAGGAGTGGAGGCACCGGC
GCCGGCGTCAGGCCGCGGATACAGCTACCTCCCTGAACGGAGAAAGCTTGTGACCAGCGTGGTTGGCGCGGTGCTCGTCC
TGTTTAGCCTTGGCATCTACGTCAGGTACAGCTTCGGCCCATGA------------------------------------
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>chr1A_1_TraesCS1A01G137300
ACTCTTGTTGTGTGTTTGCCCAGTGTCCCAAGTTGAGCATGTTGGTTGAAACTGGAAGACGAAATCTTTCCTGTCAGAGC
AACTGTTCTTTTTAGGGGCAACAATGCAACTGTTAGCCTACTTCCTAGGCGAAAGCTGCTGAAGAGGTGCTTCTTTGGAG
GAGGTTTAAGCGGCACATAGAAGATTCAGCGGACAGCGG-CAAACATCCTCCCTTTTGAAGGA-------------TGCA
TTTCTGAAGCAGCCTCTGTTTCCACAGGATGAGCTCAGTTAGATGCTT---------------TATTTAGCTCAGTAGAG
TACCTACCAGCTAGCTCGGGAATCATTGCTTGGTTTATTTGATTGATTGATAGCTGGGTTGTACATCCCGTCTAGGAGTT
TGCTGTTGGGTTGGTCATTTCTTAGAGCAAAGTCATGTAGATAGACAGTTGTAGCATGAGGTTACCTGGTTTTGAGCGTT
CCATGTAATTAGTACGTACTCCCTCCGTCCGTCCCACAATAAGTGACTCAAC----------------------------
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------------------------------------------------------TTTGTACTAATTTTGTACTAGAACTA
TTACAAAGTTGAGTCACTTAT-----------------------------------------------------------
-TTTTTGGGCGGAGGGAGTACTAT----TTTAGTTTTTCGTTTATTCACCC-TTCGCGGTGGTCTGGGTTTTGTGATGCT
GCTTTATACCATGCTTGAGTCTGTAATGTC---------------GGTCAGGGTCAGGGTCAGCCGGTGGCTTGCGTCCC
GGGACATGCATGCTTCAGTTGAGGGATGTCCGTCCAATCGTCACATGCAGCGATCGTGCGTGTTGGCAAGCCCATGGGA-
----GATGCGATGCCGGAGAAGAAGTGGTCCAGAACAGGATACAAGGTATCAC----------------CACCTGACAAG
TTCCTTCTCTACTGTGAAGGGTAAGGGTTTCTAACTCCCCCGCCTCTAGGACACTCCAGCTCAAGTGTCCAACCATATAA
ATGTA----TAGGCACGTAGCCTCTGCAACCAAGCAGTGCATACTCGCCAGCTACATTCCTCAGCGACCCAACACGTTAT
TCAACAGGGATCAGTGATGGCC---------GCCCCCGCTGCCGCCCCCGGCCGCGCGTACGAGGACTTCGTGCCGCCGC
ACAACATGGTCACCGAGCCGGCGACCCACACCCTCTCCGTCGATCTCACCGCCGCAGGCACGCACCGCACCCCCCTAC--
-ATATTAGTAC--------------------------CATCGCATGAGTTGTATATGCCG-------------GGATCAG
CTTGTGTTGATTTAGTTA---CGAGGTGCCGATTGCAGGGTACAAGAAGGAGCACATCAGGGTGCAGCTGGTCCGCAGCC
ACGGGCTAGTGGTCGTGCGCGGCGAGCGCGCCGTCGCGGGCAACCGCTGGAGCCGCTTCCGGCTGGAGTTCCGCGTGCCC
GACGGCTGCGACCTCAAGGGCATCCACGCGAGGTTCGAGGGCGGCGTCGTGCGGGTCACCATGCCCGGGCTAAGGACGGG
GCCTGCGGCCGCGGTCGGCGACGTCTCCGGCAAGCAGGTGCCCCCGGCGGCCAAGGCCGATGCTTCCGGCGTTCGAGCAG
GAGACAAGGAAGATGAGAACGTGCAGAAACAGCCGGTGGAGGAGCGCGGGGCCGACGCGGTGAAAGATAGTG--------
-------------------GCCGCCTTGATCAAGGACAAGGTACCCCTGCCGACGGCGTCCAAGGAGTGGAGGCACCGGC
GCCGGCGTCAGGCCGCGGATACAGCTACCTCCCTGAACGGAGAAAGCTTGTGACCAGCGTGGTTGGCGCGGTGCTCGTCC
TGTTTAGCCTTGGCATCTACGTCAGGTACAGCTTCGGCCCATGAGCTGAGGCAAGAGGTGTTAACTACTCGACGTCATTC
TCTCTCTCAAAAAAAAAAACTACTCGACGTCAGATGAGCGATGAGCCTAAACGATTTGCCGCCAAAACA-TGTGCAAGTG
CGATAGTGCTAAAAGCGATGCTCGGGTTGACTCAATTGTATCCTAAACCTGAACTACAGCTGCTTAAGATTCA---TGAA
TCATGACGGCTCCGTTAATCTGGTACCAACATGTACAACTTTTATTTCATT-----------------------------
-----------------------------CTCTCTCTCTCTCT-------------------------------------
----------------------------ATATAAGCACGCCTACAACAAATCCTCTGCTCTTGTATAAAC----------
----------------------------AAGAATCAGAAGCATTCCTCCTTGTTGGCTACTTACAAATTTACACCATCCC
AAATCACTATATCATAATTCTGCTTTGAGGTTCAAACTTCAAAGTAGAGTTCATAAGCAAACACCTGAACAA--------
-------------------TTTATTTGTCAGAATAAACCTAATGGCAACACGGGCGGCCCATTTCTTTCGATGATTCTGG
CACTCGCAGTAACGAAAGCCCGCATTTCTTCTTGTGACGCGATGGCGTTCCCGCGCTTCCGCCCTCCGCCGGTGCAGGCT
ATCCTCGCCGTCGG------CGGCGGCGGTTTCTCCGTGCCGCCCCGCCTCAGCCGCCTCGAGATCTCGCGCAGGTAGCT
GCCTACACCGCCGCCCTTCGTCTCCTACTGCA-CCCCGGCGAGCGCGCGCGGGCATTGCTGGTATTGGAGCCCCGCGGCA
GCTTG--------------CGGCTGATGAGACGTTCTGAACCCGAGCCGATCTCCGACAGAGGAGGAGGCAGTTGAGGAA
GCGGGGCTGGAGGAGCCCGACACGGATGCATCGCCGGCTGGCGGCGACCGCCGGTTCTTTCGCTGTCGGTGCCCCTTCCG
GTTCTCGGTGGACGGCGATGCCGGAACCACGTCGCCCTTCGGCACGGCCTCCTTCTTCTTCTTGCCGCCGAGCGCGCCGA
AGCACTTGGGCGAGGCGGACCAGCTGCGCTGAAGAGGCACCGTCTGCAACCCGACCC
>chr1B_2
-CTCTTGATGTGTGTTGGCCCAGTATCCCAAGTTGAGCATGTTGGTTGAAACTGGAAGACGAAATCTTTCCTGTAAGAGC
CCAAGCCATTCT------CAACAGTGCAACTGTTAGCCTACTTCCTAGACGAAAGCTGCTGAAGAGGTGTTTCTTTGGAG
GAGGTTTAAGCGGCACATAGAAGATTCAGCGGGCAGCGG-CAAACATCCTCCCTTTTGAAGGA-------------TGCA
TTTCTGAAGCCGCCTCTGTTTCCACAGGATGAGCTCAGTTAGATGCTT---------------CATTTAGCTCAGTAGAG
TACCTACCAGCTAGCTCGGGAATCATTGCTTGGTTTATTTGATTGATTGATAGCTGGGTTGTACATCCCGTCTAGGAGTT
CGCTGTTGGGTTGGTCATTTCTTAGAGCAAAGTCATGTAAATAGACAGTTGTAGCATGAGGTTACCTGGCTTTGAGCGGT
CCATGTAATTACTACGTACTCCCTCTGTCCGAAAATAGTTGTCATCAAAATGGATAAAAAATCAAAATGGATAAAAAGAG
ATATATCTAGAACTAAAATATGTTTAGATACACCGAAAGTGCTATTGTGAGCTCGAGCTCACAGGCACCCTTTGCTACAG
TACAAACAAAAAGAATATTTAAAAAGTTCAAAAAAATCTGAATTTTTTTGGCAACAAACATTGACATATTTTTCACATGC
GTACAAATTTTCATGACAAAATGACATTCATGTAGGTCTCAGCAAAAAAAAACAAAATCGATGCTCAAAAATGCTTCCAA
AAACAGTTTTTTTGGAGCATGATTTTGTTTTTTTTGTTGACACCTCCACAAATGTCATTTCATCACGAAAATTGGCACGC
ATGTAGAAAAAACATCAAAGTTTCTTGACAAAAAAATTCAGATTTTTTTGAATTTTTTTACTATTTTTTCGGATTTTACT
GTTCATCCGGGATCACTGGTGCCCGGGATCAATTCCTCCGCGTCCTAGATACATCCTTTTTATCCATTTTGATGACAAGT
ATTTTCGGACGGAGGGAGTACTATATATATTAGTTTTTCGT-----------TTCCCGTTGGTCTGGGTTTCGCGATGCT
GC---ATACCATGCTTGAGTCTGTAATAATGCCGATCAGGGTCAGGGTCAGGGTCAGGGTCAGCCGGTGGCTTGCGTCTC
GGGACATGCATGTTTCAGTCGAGGGATGTCCGTCCAATCGTCGCATGCAGCGATCGTGCGTGTTGGCAAACCCATAGGA-
----GATG-----CCGGAGAAGAAGTGGTCCAGAACAGGATACAAGGTATCACCACCACCAGAGTGCTTCACCTGACAAG
TTCCTTGTCTTCTGTGAA-----AGGGTTTCTTCCTCCCCCGCCTCCAGGACACGGCAGCTCACGTGTGCAACCATATAA
ATGTAGGTGTAGGCACGTAGCCTCTGCAACCAAGTACCGCATACTCGCCAGCTACATTCCTCAGAGACGCAACAAGTTAT
TCAGCAGAAATCAGCCATGGCC---------GCCATCG---------CAGGCCGCGCGTACGAGGACTTCGTGCCGCCGC
ACAACATGGTCACCGAGCCGGCGACCCACACCCTCTCCGTCGATCTCACCGCCGCAGGCACGCACCGCAACCCCCCTACA
TATATTAGTACCTCTTCTTTGCTGACTTCTTCAGCCGCATCGCATGAGTTGTTATATCATATGCCGGGATCATGGATCAG
CTTGTGTTGATTTAGTTAGTACGATGTGCCGATTGCAGGGTACAAGAAGGAGCACATCAGGGTGCAGCTGGTCCGCAGCC
ACGGGCTAGTGGTCGTGCGCGGCGAGCGCGCCGTCGCGGGCAACCGCTGGAGCCGCTTCCGCCTCGAGTTCCGCGTGCCC
GACGGCTGCGACCTCAAGGGCATCCACGCGAGGTTCGAGGGCGGCGTCGTGCGGGTCACCATGCCCGGGCTAAGGACC--
-------GC---GGTCGGCGACGTCTCTGGTAAGCAGGTGCCCCCGGCGGCCAAGGCTGATGCTTCCGGCGTTGGAGCAG
GAGACAAGGAAGACGAGAACGTGCAGAAACAGCCGGCGGAGGAGCGCGGGGCCGACGCGGTCAAAGATAGTGCCCGCCTC
GATCAAGGACAAGATAGTGGCCGCCTTGATCAAGGACAAGGTACCCCTGCCGACGGCGTCCGGGGAGTGGAGTCGCCGGC
GACGTCGTCAGGCCGCGGATACAGCTACCTCCCTGAACGGAGAAAGCTTGTGACCACCGTGGTTGGCGCGGTGCTCGTCC
TGTTTAGCCTTGGTATCTACGTCAGGTACAGCTTCGGCCCATGAGCTGAGGCAAGAAGCGTTG-----------------
------------------ACTACTCGACGTCAGATGAGCGATGAGCCTAAACGATTTGGCGCCAAAACGTTGTGCAAGTG
CGATAGTGCT--AAGCGATGCTCGGGTTGACTCAATTGTATCCTAAACCTAAACTACAGCTGCTTAAGATTCATGATGAA
TCATGACGGCTTCCTTAATCTGGTACCAACATGTACTCAC----------------------------------------
-----------------------------------CTCTCTCT-------------------------------------
----------------------------ATATAAGCACTCTTATAACAAATCCTCTGCTCTAGTATAAATCAAATCCTGC
ACCACAATACAACATTCTAAACTTTAATAAGAATCGGAATCATTTCTCCTTGTTGGCTATTTATAAATTTACAGCCCTCA
AATCACC---ATCATAATTCTGCTTTGAGGTTCAAA-------GTAGAGTTCAAAAGCAAACACCTGAACAAATTATTTG
TCCTTTTTAGGGAAGACAGTTTATTTGTCAGAATAAACCTAATGGCAACACGGGCGGCTCATTTCTTTCGATGATTCTGG
CACTCGCAATAACGAAAGCCCGCATTTCTTCTTGTGACGCGATGGCGTTCCCGTGCTTCCGCCCTCCGCCGGTGCAGGCT
ATCCTCGGCGTCGGCGTCGGCGG------TTTCTCCGCGGCGCCCCGCCTCAGCTGCCTGGAGATCTCGCGCAGGTAGCC
GCCTACACCGCCGCCCTTCGTCTCCTCCTGCTTCCCCGGCGAGCGCGCGCGGGCATTGCTGGTATTGGAGCTCCGCGGCA
GCTTGCTGCCGAAGCACGGCGGCTGATGAGACGTTCTGAACCCGAGCTGATCCCCGACAGAGGAGGAGGCAGTTGAGGAA
GCGGGGCTGGAGGAGCCCGACACGGATGCATCACCGGCTGGCGGCGGCCGCCGGTTCTTTCGCTGTCGGTGCCCCTTCCT
GTTCTCCGTGGACGGCGATGCCGAAACCACGTCGCCCTTGGGCGCGGCCTTCTTCTTCTCCTTGCCGCCGAGCGCGCCGA
AGCACTTGGGCGAGGCGGACCGGCTGCGCTGAAGAGGCACCGTCTGCAGCCCGACCC
>chr1D_8
-------TTGTGTGTTTGCCCAGTGTCCTAAGTAGAGCATGTTGGTTGAAACTGGAAGACGAAATCTTTCCTGTCAGAGC
CCAAGTCATTCT------CAGCAATGCAACTGTTAGCCTACTTCCTAGGCGAAAGCTGCTGAAGAGGTGTTTCTTTGGAG
GAGGTTTAAGCGGCACATAGAAGATTCAGCGGACAGCGGACAAACATCCTCCCTTTTGAAGGAATTGCAAACATGGTGCA
TTTCTGAAGCAGCCTCTGTTCCCACAGGATGAGCTCAGTTACATGCTTTATTTAGCTCACTAGTATTTAGCTCAGTAGAG
TACCTACCAGCTAGCTCGGGAATCATTGCTTGGTTTATTTGATTGATTGATAGCTGGGCTGTACATCCCGTCTAGGAGTT
TGCTGCTGGGTTGGTCATTTCTTAGAGCAAAGTCATGTAGATAGACAGTTGTAGCATGAGGTTACCTGGCTTTGAGCGTT
CCATGTAATTAGTACGTA--------------------------------------------------------------
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-----------------GTGCTAT----ATTAGTTTTTCGTTTATTCACCCCTTCCCGTTGGT---------------CT
GCTTTATACCATGCTTGAGTCTGTAATAATGCCGATCAGGGTCAG------GGTCAGGGTCAGCCGGTGGCTTGCGTCCC
GGGACATGCATGTTTCAGTCGAGGGATGTCCGTCCAATCGTCACATGGAGCGATGGTGCGTGTTGGCAAGCCCGTGGGAG
ATGCGATG-----CCGGAGAAGAAGTGGTCCAGAACAGGATACAAGGTATCACCACCACCAGAGTGCTTCACCTGACAAG
TTCCTTCTCTTCTGTGAA-----AGGGTTTCTTCCTCCCCCGCCTCCAGGACACGGCAGCTCACGTGTGCAACCATATAA
ATGTAGGCGTAGGCACGTAGCCTCTGCAACCAAGTAGTGCATACTCGCCAGCTACATTTCTCAGCGACGCAACAAGTTAT
TCAAGAGAAATCAGTCATGGCCGCCACCGCTGCCATCG---------CCGGCCGCGCGTACGAGGACTTCGTGCCGCCGC
ACAACATGGTCACCGAGCCGGCGACCCACACCCTCTCCGTCGATCTCACCGCCGCAGGCACGCACCGCACCCCCGTAC--
-----------CTCTTCTTTGCTGAGTTCTTGGGCCGCATCGCATGAGTTGTATATGCCG-------------GGATCAG
CTTGTGTTGATTTAGTTA---TGAGGTGCCGGTTGCAGGGTACAAGAAGGAGCACATCAGGGTGCAGCTGGTCCGCAGCC
ACGGGCTAGTGGTTGTGCGCGGCGAGCGCGCCGTCGCGGGCAACCGCTGGAGCCGCTTCCGCCTGGAGTTCGGCGTGCCC
GGCGGCTGCGACCTCAAGGGCATCCACGCGAGGTTCGAGGGCGGCGTCGTGCGGGTCACCATGCCCGGGCTAAGGACC--
-------GCCGCGGTCGGCGACGTCTCCGGCAAGCAGGTGCCCCCGGCGGCCAAGGCTGATGCTTCCGGCGTTCGAGCAG
GAGATAAGGAAGATGAGAACGTGCAGAAACAGCCGGCGGAGGAGCGCGGGGCCGACGAGGTGA-----------------
----------AAGATAGTGGCCGCCTTGATCAAGGACAAGGTACCCCTGCCGACGGCGTCCGGGGAGTGGAGTCGCCGGC
GACGGCGTCAGGCCGCGGATACAGCTACCTCCCTGAACGGAGAAAGCTTGTGACCACCGTGGTTGGCGCGGTGCTCGTCC
TGTTTAGCCTTGGCATCTACGTCAGGTACAGCTTCGGCCCATGAGCCGAGGCAAGGGGTGTTGACTACTCGAC-------
----------------------------GTCAGATGAGCGATGAGCCTAAACGATTTGGCGCCAAAACGTTGTGCAAGTG
CGATAGTGCT--AAGCGATGCTCGGGTTGACTCAATTGTATCCTAAACCTAAACTACAGCTGCTTAAGATTCA---TGAA
TCATGACGGCTTCGTTAATCTGGTACCAACATGTACAACTTTTATTTCATTCTCTCTCTCTCTCTCTCTCTCTCTCTCTC
TCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTAGTATAAATCCTCTGCTCTAGTATAAATCAAATCATC
TGCTCTACTGAGAATATTCGAAACATAAATATAAGCACGCCTACAACAAATCCTCTGCTCTAGTATAAATCAAATCCTGC
ACCACAATACAATATTCCAAACATAAATAAGAATCGGAATCATTTCTCCTTGTTGGCTATTTACAAATTTACAACCCTCA
AATCACC---ATCATAATTCTGCTTTGAGGTTCAAA-------GTAGAGTTCAAAAGCAAACACCTGAACAAATTATTTG
TCCTTTTTAGGGAAGACAATTTATTTTTCAGAATAAACCTAATGGCAACACGGGCGGCCCATTTCTTTCGATGATTCTGG
CACTCGCAGTAACGAAAGCCCGCATTTCTTCTTGTGACGCGATGGCGTTCCCGCGCTTCCGCCCTCCGCCGGTGCAGGCT
ATCCTCGGCGTCGG------CGG------TTTCTCCGCGGTGCCCCGCCTCAGCCGCCTGGAGATCTCGCGCAGCTAGCC
GCCTACACCGCCGCCCTTCGTCTCCTCCTGCTTCCCCGGCGAGCGCGCGCGGGCGTTGCTGGTATTGGAGCCCCGCGGCA
GCTTGCTGACGAAGCACGGCGGCTGATGAGACGTTCTGAACCCGAGCCGATCCCCGACAGAGGAGGGGGCAGTTGAGGAA
GCGGGGCTGGAGGAGCCCGACACGGATGCATCGCCGGCTGGCGGCGGCCGCCGGTTCTTTCGCTGTCGGTGCCCCTTCCG
GTTCTCCGTGGACGGCGATGCCGAAACCACGTCGCCCTTGGGCGCGGCCTTCTTCTTCTCCTTGCCGCCGAGCGCGCCGA
AGCACTTGGGCGAGGCGGACCGGCTGCGCTGAAGAGGCACCGTCTGCAGCCCGACCC
>SNPs
S-------------------------------------------------------------------------------
SSSS--SS--S-SSSSSS---------------------------------------------------S----------
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---------------------------------------------------------------------S----------
-------------------------S-----SSSSSSSS-SSSSSSSSS-SS----------------------------
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---------------------------------------------------------S-----S----SSSSSSSSSSSS
S-S--SSSSS--SSSSSSSSS-----------------------------------------------------------
-----S--S-------------------S--------------------------S--S------------S-S------
---------------------------SSS--------------------------------------------------
------------S------S------------------------------------------------------------
--------SSSSS-------------------------------------------------------------------
----------S-------SSSSS---------SS------------S-------SS-------S----S-----------
----------------------------------S---------------------------------S-----S-----
-------SS------S------------------SS--SSSSSSSSS---------------------------------
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-------------------------------------------------------------S------------------
-----------------------------------------------------------------------------SSS
SSSSSSS--------------------------------------------------S----------------------
------------------------------------S-------------------------------------------
-------------------------------------------------------------SS---------S-S-----
-S------------------------------------------------------S-----------------------
--------------------------------------------------------------S----------SSSSSSS
SSSSSSSSSSSSSSSSSS----------------------------------------S---------S-----------
----------SS--------------------------------------S-----------------------------
-----------S--------------------------------------------------------------------
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-------------------------------------------------------------S-------S----------
-----------------------------------S---S----S--------------S-------------S-SSS-S
--SSSS-SSS--------------------------SSSSSSS----------S--------------------------
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-------S---------------SSSSSS--------S-S-------------------S-------------------S
--------------------------S----S------------------------------------------------
----------------------------------------------------S---------------------------
----------------------------------------------S---------------------------------
------S----------------S---------------S---S------S--------S--------------------
---------------------S--------------------------S--------
>forward_524
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------------------------CCGTCCGTCCCACAATAAGT------------------------------------
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>reverse_2459
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----------------------------------------------------------CCGCCAAAACATGTGCAAGT--
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