>input_sequence_69912
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-----------------------------------ATGGATATTTTGTATCTATGCAAGGATGTCTTAAAGATTCAGAAG
TTTAGGCGACTGGCGTCTTATGCTGGATTCTATTCGTTCACTACCCTGGTCACCTATGCTTACACAAGCAATACGTATGT
CCCTGCCGAATTGCCCTTCTTTACAGACCTGCAGTGTCTTGCCACTTCTTATTCTTACCTGCCAACATTCTTCTCTCCTG
CCCAACTTATTGTAGGACAAGGGCTGGCATTTCGAGGGCTGATCAGTATTATGCCGCCTACCCTTCTGGTACTGACCTGC
TGACTGATACTGCAAAGGTATGAAAACCGAAAAGAGCATTTGTGGTTAATCATGTCAGATTTTTTGTTAAATCTGAGCAG
TAAGCAGCAAATGCAACAAAGTTGTTGTTTTGTTTACTAATTTAATCGAGTTGACTTGCTTAAGGGAAGCGGTACCTGAT
TTCTTTTGTCT-GTTTGCAGCTTTACAAGGCTGCGTTGGGTAATTGTTTCGAAATAGACGACTGGGGTCCAATAGAATTC
TCCATCATGGCAAAGCATTTTGACCGGCAAGGCAAACCACCATATGCTTACCATGCTGTAAGTTTCTTAATACTTGCAGA
TACAAATTTGAAAACAGTTCTGCTCCTTGTTCTGGGGTTTTCTCCCTGTGTGCTTTGCAAGTCTTACATCAATTGCTTAC
CGTGTGTTTTCAGCAATACATGTCACACCTTCTATCCCATGGCCAGCTTGATGGAAGTGGTTAA----------------
--------------------------------------------------------------------------------
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------------------------------------
>chr2D_1_TraesCS2D01G475000
TAAACTAATATCAGACCGGTAATATTACCCAGCTGACGTTCGCTGGGAGAAGGGTGGCAAGCGAACGTCATTTGACGACA
ATTTTAGTTGAGAAGAAAAAACAAACGATGGTAGTTTTTAAACGAAAAACTCCTTCCCTGAAGAAACTGACATGGCATTC
AGAAGAAACT----------------------GCCACTCCCTCAAAACTAAAAATGCCACCTAAAATGTTCGAATGTGTC
ATCCTTGCTGGCAAACGTTCGCCAGTTATGAGCGTCCGAGAGGATAGGTTTCTGCAATGTTGCGAGCCCTAGCCTTCACG
GGGCCAGCCGCCAGGTGCGCAAGGCGGCGACC-------TCGGACCTCCTGACCTCGTGGCAGTTCGTGCCAGGTGCTGG
TCTCCGGCGTCAGGCAACACCGCAGTGGCGCAGGATTCCAGGGTGAAAGCAGCAAGCGCTTCCCTCCTCTTCGGCGTCTT
CATCCCTGCCACTCTGCTCGTCCGCGATTACAAGGTGTGCCCCCTCCTGCCGGAAAAATCCCCCTAATCTGTGCTGGAAA
CGGCGGAGATCTGATTGGTTGTCGCCCGCGTAGCTCCGGGTCCCGACTTTGTTGTACTTTTCCCTGATTGTTTGCTGGAT
CTGATTATATAGCGAGTGATGTTTCCCTGTAAAATGACGGTCAACCTTAG-CTGTTAGGCATTCCCTTTTGTTAAATTAC
ATGGTCTCCAGGTATTGTTT--------------------------TCCCTCGTGGATGCTCAAAAATCTGAACTTGCAT
TGTTC--TTACTCGTTTTAATATGTCAAGCCTATGTGGACGCAATATGTTTTTGCCTTCTGTAGTTAGCTTCCATGACAG
CTGGTTATGTTAACTATGTG------------------------------------------------------------
---------------------------------AGGGTCATCAGCAATCAGCAAGGTATTTGTAGTATGCAGAAGCACTC
TCAGATAGTGAATTTTGCTTGCTGATGGCTGCGTT-GTGCTGACTGCTTAGAACTGTGTTTGTCCCCAACTGA--TTTGT
C-ATTTCTCTAACACCAGGGTCAAGCTGCTGTGAGATGGATATTTTGTATCTATGCAAGGATGTCTTAAAGATTCAGAAG
TTTAGGCGACTGGCGTCTTATGCTGGATTCTATTCGTTCACTACCCTGGTCACCTATGCTTACACAAGCAATACGTATGT
CCCTGCCGAATTGCCCTTCTTTACAGACCTGCAGTGTCTTGCCACTTCTTATTCTTACCTGCCAACATTCTTCTCTCCTG
CCCAACTTATTGTAGGACAAGGGCTGGCATTTCGAGGGCTGATCAGTATTATGCCGCCTACCCTTCTGGTACTGACCTGC
TGACTGATACTGCAAAGGTATGAAAACCGAAAAGAGCATTTGTGGTTAATCATGTCAGATTTTTTGTTAAATCTGAGCAG
TAAGCAGCAAATGCAACAAAGTTGTTGTTTTGTTTACTAATTTAATCGAGTTGACTTGCTTAAGGGAAGCGGTACCTGAT
TTCTTTTGTCT-GTTTGCAGCTTTACAAGGCTGCGTTGGGTAATTGTTTCGAAATAGACGACTGGGGTCCAATAGAATTC
TCCATCATGGCAAAGCATTTTGACCGGCAAGGCAAACCACCATATGCTTACCATGCTGTAAGTTTCTTAATACTTGCAGA
TACAAATTTGAAAACAGTTCTGCTCCTTGTTCTGGGGTTTTCTCCCTGTGTGCTTTGCAAGTCTTACATCAATTGCTTAC
CGTGTGTTTTCAGCAATACATGTCACACCTTCTATCCCATGGCCAGCTTGATGGAAGTGGTTAACTGCAGGGATGTGTTC
TGTTAGATTCTCTTGAGGCTTCATTGTAGTCCTTCAGTTATTTGTAAGAAAGAGATGGCTCGCTGAAATCTTGAATTGTT
CTGGCCTGTTATGACGGATAGCAGAGTCAAAATCGTAGATGCTGAGCTGTTGCAATATCAACCTATTAATAGTCAAAACT
GTGCGGAATTTCCCCATGAATAATCATGGTTGCACCTAGTTGAAGCAAGCACTAGCGATCTCTTATCCCTCCTTTTTGTT
ATTGCTGAATGTAACTCTTTTGTGTGTCAGTGTTCATAGCAGAATTAGTTTGTGTTCTCTTGGTCGATCTGCCGTTTCAC
CAGCAAAGACCAGTGACCTTAATCCTGCACATTGAGTTGTTGGTCCATGCATGGATTGTAGATGCTGGTTGGCTCCTTAA
CTAGAGGTTTTCAGTGTCGGTTCAGGAGTTCCCCGAGAGTTTCTGCTCAGGCACTTGTACATTACTATATTCTCTATAAC
GTTGTCAAGAGTCATTTTATTGTACACAATATTTCCGGTAGACTTTTAAATACCTTCTCAATGCTGGTATGAATCTATGT
AGAGCTATACTTTGAAACAACAGTGTGAACTGTGCTAGTTATAAAATCAACAAGGACTGTTTTTGCAAG-GGGTGTTGCG
TGGCAACCTTTGTCTTGTAAGGAG---CCCATAGGCAGGGTTGATGATTGTTCTATGTTCGGCGAGTAGTTCTTGT----
AAGGAGGAGCCTTCGGTTGTTTGCCTTGCTTTCCAACGGAAGC---ATATATCTGTAAATGAAAGTGTGGTTTCTTCTTA
ACAAAAAGGCATAGCACAGAAGTGTTATTTTGCCAAACTTTTGCCTATCAGGTGAGGCAGACACCGCGTCACAAGGAACG
CATATATCTTGCAATTTACTTAGCACAATGAAAGCAAGACATTAGACACAAAAAATCAACGGTAAAA-GATAAGGTTAAA
AAAGACTTCACAGCAAAACACATCTATCAAACAGCT
>chr2A_1
TAAACTAATATAAGACCGGTAATATTACCCAGCTGACATTCGCTGGGAGAAGGATGGCAAGCAAACATGTTTTGGCGACA
ATTTTAGGCGTGAAGAAAAAACAAACGACGGTAGTTTTTAAACGAAAAATGCCTTCCCTGAAGAAACTGACATGGCATTC
GGAAGAAACTGACATGGCATTCTGAAGAAACTGCCACTCCCTCAAAACTAAAAATGCCACCTAAAATGTTCGCATGTGTC
ATCCTTGCTGGCAAACGTTCGCCAGTTATGAGCGTCCAAGAGGATAGGTGTCTGCAATATTGCGAGCCCTAACCTTCACA
GGGCCAGCCGCCAGGTGCGCAAGGCGGCGACCTTGGAGCTCGGACCTCCTGACCTCGCGGCAGCTCGCGCCAGGTGCTGG
TCTCCGGCGGCAGGCAACACCGCAGTGCCGCAGGATTCCAGGGTGAAAGTAGCAAGTGCTTCCCTCCTCTTCGGCGTCTT
CATCCCTGCCACTCTGCTCGTCCGCAATTACAAGGTGTGCCCCCTCCCGCCGGAAAACT-CCCCTAATCTGCGCTGGAAA
CGGCGGAGATCTGATTGGTTGTCGCCCGCGTGGCTCTGGGTCCCGACTTTGTTATACTTTTCCCTGATTGTTTGCTGGAT
CTGATTATAAAGCGAGTGATGTCTCCCTGTGAAATGACAGTCAACCTTAGCCTGTTAGGCATTCCCCTTTGTTAAATTTC
ATGGTCGCCAGGTATTGTTTTCCCTCATTTTTGAATTTTATTGTTTTCCCTCGTGGATGCTTAAAAATCTGAACTTGCAT
TGTGC--TTACTCGTTT-AATATGCCAAGCCTATGTGGACACAATATGTTTTTGCCTTCTGTAGTTAGCTTCCATGGCAG
CTGGTTATGTTAACTACTCCCTCCGTTCCATAATAGATGACCCAACTTTGTATTAACTTTGTACTAAAGTTAGTACAAAA
TAGTCATCTATTTTGGAATGGAGGGAGTATGTAAGAGGCATCAGCAATCAGCAACTAATTTGTAGTATGCAGAAGCACTC
TCAGATAGTGAATTTTGCTTGCTGATGGCTGCATT-GTGCTGACTGCTTAGAACTGTGTTTGTCCCCAACTGA--TT-GT
C-ATTTTTCTAACACCAGGGTCAAGCTGCTGTGAGATGGATATTTTGTATCTATGCAAGGATGTCTTAAAGATTCAGAAG
TTTAGGCGGCTGGCGTCTTATGCTGGATTCTATTCATTCACTACCCTCGTTACCTATGCTTACACAAGCAATACGTATGT
CCCTGCTGAATTGCCCTTCTTTACAGACATGCAGTGTCTTGCCACTTCTTATTCTTACCTGCCAACATTCTTCTCTCCTG
CCCAACTTATTGCAGGACAAGGGCTGGCATTTCGAGGGCTGATCAGTATTATGCCGCCTACCCTTCTGGTACCGACCTGC
TGACTGATACTGCAAAGGTATGAAAACCGAAAAGAGCATTTGTGGTTAATCATGTCAGATTTTTTGTTAAATCTGAGCAG
TAAGCAGCAAATGTAACAAAGTTGTTGTTTTGTTTACTAATTTAATCGAGTCGACTTGCTTAAGGGAAACAGTACCTGAT
TTCTTTTGTCT-GTTTGCAGCTTTACAAGGCTGCGTTGGGTAATTGTTTCGAAATAGACGACTGGGGTCCAATAGAATTC
TCCATCATGGCAAAGCATTTTGACCGGCAAGGCAAACCACCATATGCTTACCATGCTGTAAGTTTCTTAATACTCGCAGA
TACAAATTTGAAAACAGTTCTGCTCCTTGTTCTGGGGTTTTCTCCCTGTGTGCTTTGCAAGTCTTACATCAATTGTTTAC
CGTGTGTTTTCAGCAATACATGTCACACCTTCTATCCCATGGCCAGCTCGATGGAAGTGGTTAACTGCAGGGATGTGTTC
TGTTAGATTCTCTTGAGGCTTCATTGCAGTCCTTCAGTTATTTGTAAGAAAGAGATGGCTCGCTGAAATCTTGAATTGTT
CTGGCCTGTGACGATGGATGGCAGAGTCAAAATCGTAGATGCTGAGCTGTTGCAATATCAACTTACTAGTAGTCAAAACT
GTGCCGAATTTCCCCATGAATAATTATGGTTGCACCTAGTTGAAGCAAGTACTGGCAATCTCTTATCCCTCCTTTTTGCT
ATTGCTGAATGCAACTCTTTTGTGTGTCAGTGTTCATAGCAGAATTAGTTTGTGTTCTCTTGGACCTTTTCAGGTTGGGT
C-------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------AAACAGCAGTGTGAACTGCGCTAGTTATAAAATCAACAAGGACTGTTATTGCAAGTGGGTGTTGCG
CGGCAACCTTTGTCTTGTAAGGAGGAACCCATAGGCAGGGTTGATGATTGTTCTGTGTTCCGCGAGTAGTCCGAACTCTG
ACGGAGGAGCCTGCGGTT-TTTGCTTTGTTTTCCAACGAAGGCTAGATATATCTGTAAAAAAGAGTGTGATTTCTTCTTA
ACAAAA-GGCATAGCACAGAAGTGTTATTTTGCCAAACTTTTGCCTATAAGGCGAGGCAGACGCCGTGTCACAAGGAACG
CATATATCTTGCAATTTACTTAGCACAATGAAAGCAACACATTAGACACAAAAAGTCAACGGTAAAAAGATAAGGTTAAA
AAAGACTTCACAGCAAAAAACATCTATCAAACAGCT
>chr2B_111
--------------------------------------------------------------------------------
------------------------------GTAGTTTTTAAAC-AAAAATGCCTTCTCTGATGAAACTGACACGTTGTTT
GGAAAA---------------------AAACTGCCACTCCCTCAAAACTAAAAATGCCACCTAAAATGTCCCAGTGTGTC
ATCCTTGCTAGCGAACGTTCGCCAGTTATGAGCATCCAAGAGGATAGGTGTCTGCAATATTGCGAGCCCTAACCTTCACG
GGGCCAGCCGCCAGGTGCGCAAGGCGGCGACCT-------CGGACCTCCTGACCTCGCGGCAGCTCGCGCCAGGTGCTGG
TCTCCGGCGGCAGGCTACACCGCAGTGGCGCAGGATCCCGCG------------AGCGCTTCCCTCCTCTTCGGCGTCTT
CATCCCTGCCACTCTGCTCGTCCGCGATTACAAGGTGCGCCCCCTCCCGCCGGAAAAATCCCCCTAGTCTGCGCTGGAGA
CGGCGGAGATCTGATTGGTTGTCGCCCGCGTGGCTCCGGGTCCCGACTTTGTTCTACTTTTCCCTGATTGTTTGCTGGAT
CTGATTATATAGCGAGTGATGTCTCCCTGTGAAATGACAGTCAACCTTAGCCTGTTAGGCATTCCCCTTTGTTAAATTTC
ATGGTCGCCAGGTATTGTTT--------------------------TCCCTCGTGGATGCTCAACAGTCTGAACTTGCAT
TGTTC--GTGCTCGTTT-AACATGTCAAGCCTATGTGGACGCAACATGTTTTTGCCTTCTGTATTTAGCTTCCATGGCAG
CTGGTTATGTTAAC------------------------------------------------------------------
---------------------------TATGTAAGGGGCATCAGCAATCAGCAGGGAATTTGTAGTATGCAGAAGCACTC
TCAGATAGTGAATTTTGCTTGCTGATGGCTGCATT-GTGCTGACTGCTTAGAACTGTGTTTGCCCCCCAACTGATTT-GT
C-ATTTCCCTAACACCAGGGTCAAGCTGCTGTGAGATGGATATTTTGTATCTATGCAAGGATGTCTTAAAGATTCAGAAG
TTTAGGCGACTGGCGTCTTATGCTGGATTTTATTCATTCACCACCCTCGTTACCTATGCTTACACAAGCAATACGTATGT
CCCTGCTGAATTGCCCTTGTTTACAGACCTGCAGTGTCTTGCCACTTCTTATTCTTACCTGCCAACATTCTTCTCTCCTG
CCCAACTTATTGCAGGACAAGGGCTGGCATTTCGAGGGCTGATCAGTATTATGCCGCCTACCCTTCTGGTACTGAGCTAC
TGACTGATACTGCAAAGGTATGAAAACCGAAAGGAGCACTTGTGGTTAATCATGTCAGATTTTTTGTTAAATCTGGGCAG
TAAGCAGTAAATGTAACAAAGTTGTTGTTTTGTTTACTAATTTAATCGAGTTGACTTGATTAAGGGAAGCGGTACCTGAT
TTCTTTTGTCT-GTTTGCAGCTTTACAAGGCTGCGTTGGGTAATTGTTTCGAAATAGACGACTGGGGTCCAATAGAATTC
TCCATCATGGCAAAGCATTTTGACCGGCAAGGCAAACCACCATATGCCTACCATGCTGTAAGTTTCTTAATACTTGCAGA
TACAAATTTGAAAACAGTTCTGCTCCTTGTTCTGGGGTTTTCTCCCTGCGTGCTTTGCAAGTCTTACATCAATTGCTTAC
CGTGTGTTTTCAGCAATACATGTCACACCTTCTATCCCATGGCCAGCTCGATGGAAGTGGTTAACTGCAGGGATGTGTTC
TGTTAGATTCTCTTGAGGCTTCATTGTAGTCCTTCAGTTATTTGTAAGAAAGAGATGGCTCGCTGAAATCTTGAATTGTT
CTGGCCTGTTACGACGGATGGCATAGTCAAAATCGGTGATGCTGAGCTGTTGCAATATCAACTTATTAATAGTCAAAACT
TTGCGGAATTTCCCCATGAATAATCATGGTTGCACCTAGTTGAAGCAAGCATTGGTGATCTCTCA----TCCTTTTTGTT
ATTGCTGAATGTAACTCTTTTGTGTGTCAGTGTTCATAGCAGAATTAGTTTGTGTTCTCTTGCTCGATCTGCCGTTTCAC
CAGCAAAGACCAGTGACCTTAATCCTGCACCTGGAGTTGTAGGTGCATGAATGGC----AGATGCTGGTTGGCTCCTGAA
CTAGATGTTTTCAGTGCCGGTTCAGGAGTTCCTCGAGAGTTTCTGCTCAGGCACTTGTACATTACTATATTCTCTATAAC
GTTGTCACGAGCCATTTTATTGAACACAATATTTCCAGTAGACTTTTAAATACCTTCTCAGTGCTGGTAGTAATCTATGT
AGAGCTATACTTTGAAACAACAGTGTGAACTGCGCTAGTTATAAAATCAACAAGGACTGTTTTTGCAAGTGGGTGTTGTG
CGGCAACCTTTGTCTTGTAAGGAGGAACCCACAGGCAGGGTTGATGATTGTTCTATGTTCTGCGAGTAGTCTGAACTCTG
AAGGAGGAGCCTGTGGTT-TTTGCTTTGTTTTCCAACGAAAGCTAGATATATCTGCAAATAAAAGCGTGATTTCTTCTTT
ACAAAAAGGCATAGAACAGAATTGTTATTTTGCCAAACTTTTGCCTATAAGGCGAGGCAGACGCCGCGTCACAAGGAACG
CATATATCTTGCAATTTACTTAGCACAATGAAAGCAACACATTAGACAG-AAAAAGTAACGGTAAAA-GATAAGGTTAAG
AAAGACTTCACAGCAGAACACATCTATCAACAGCT-
>chr3D_687
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----------------------------------------------------------------------------TTGC
ATGGTCGCTAGTT--T-TTT--------------------------TTCCATGCGAATACTCAAGAATCTAGGCTTGCAT
TGTTTTTTTACTTGTTT-AATCTGTCAAGACTATGTAGATACAGAAAC--TTTGCCTTTCCCAATTAGCGTCTATGACAG
CTGGTTATGTTAGT------------------------------------------------------------------
------------------------------------GGCATCAGCAATCACCCAAGAATTTATAATATGCAGAAACATTT
TAGGATAATGA--TTTGTTTCCTGATGGCTCCAACAATGCTGGCTTTGTTGGACTGTGTTTGTCTTCACTTAA--TTTAT
C-TTTTTTAAT--ACCAGTGTCTAGCTGCTGTGAAATGGACATTTTGTATCAGTGCAAGGAGATCTTAAAGATTCAGAAG
TTTAGGCGATTGGCGTCTTATGCTGGATTCTATTCCTTCACTACCCTCGTTACCTATGCTTACACAAGCAATACGTATGT
CATTGCTGAATTACCCTTTTTTCCACAGTTGCAAAATCTTGTGACTTGTTGTTCTTTACCACCAAAATTCTTCTCTCTCT
GAG--CTTACTGCAGGACAAGAGCTGGCATTTCGAGGGCCGATCAGTATTATGCTTCCTACCCTTCTGGCACCGAGCTAT
TAACTGACACTGCAAAGGTATTAAC-CCGAAAAGATT-------------------------------------------
-----------TGTAAATAAAATTTCATTTTGTGTACCGTGCCAGTT--GCCCACTTGCTTCAGAGAGGTAATATCTGAT
TTTTTTCGGGTGGTTTGCAGCTTTACAAGGCTGCATTAGGTAATTGTTTTGAAATAGACGACTGGGGTCCAATAGAATTC
TCCATCATGGCAAAGCACTTTGACCGGCAAGGCAAACCACCATATGCTTACCATGCTGTAAGTGTCTTAAAATTTTCAAA
TAAGCTTCTTTGTTTGGATTAATTTC-----------------CACCGCATGGTTTGCAAGTTTTATATCGGCTCTA-AC
TTTGTTG-TTCAGCAATACATGTCGCACCTTCTATCCCATGGCCAACTCGATGGAAGTGGTTAACTGTCA-GATGTGTTT
TAGTTGACTCTCGTGAGGC-------------------------------------------------------------
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>chr3A_687
--------------------------------------------------------------------------------
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----------------------------------------------------------------------------TTGC
ATGGTCGCTAGTT--C-TTT--------------------------TTTCATGTGCATACTCCAGAATCTAGGCTTGCAT
TGTTTTTTTACTTGTTT-AATCTATCAAGACTATGTAGATGCAGAAAC--TTTGCCTTTCCCAATTAGCGTCTATGACAG
CTGGTTATGTTAGT------------------------------------------------------------------
------------------------------------GGCATCAGCAATCACCCAAGAATTTATAATATGCAGAAACATTT
TAGGATAATGA--TTTGTTTCTTGATGGCTCCAACAGTGCTGGCTTTGTTGGACTCTGTTTGTCTTCACTTAA--TTTAT
C-TTTTT-AAT--ACCAGTGTCTAGCTGCTGTGAAATGGACATTTTGTATCAGTGCAAGGAGATCTTAAAGATTCAGAAG
TTTAGGCGATTGGCGTCTTATGCTGGATTCTATTCCTTCACTACCCTCGTTACCTATGCTTACACAAGCAATACGTATGT
CATTGCTGAATTACCCTTTTTTCCACAGTTGCAAAATCTTGTGACTTGTTGTTCTTTACCACCAAAATTCTTCTCTCTCT
GAG--CTTACTGCAGGACAAGAGCTGGCATTTCGAGGGCCGATCAGTATTATGCTTCCTACCCTTCTGGCACTGAGCTAT
TAACTGACACTGCAAAGGTATTAAC-CTGAAAAGATT-------------------------------------------
-----------TGTAAATAAATTTTCATTTTGTGTACTGTGCCAGTT--GCCCACTTGCTTCAGAGAGGT-ATATCTGAT
TTTTTTCGGGTGGTTTGCAGCTTTACAAGGCTGCATTAGGTAATTGTTTTGAAATAGACGACTGGGGTCCAATAGAATTC
TCCATCATGGCAAAGCACTTTGACCGGCAAGGCAAACCACCATATGCTTACCATGCTGTAAGTGTCTTAATATTTTCAAA
TAAGCTTCTTTGTTTGGATTAATTTC-----------------CACCGCATGGTTTGCAAGTTTAATATCGGCTTTGTAC
TTTGTTGTT---GCAATACATGTCGCACCTTCTATCCCATGGCCAACTCGATGGAAGTGGTTAACTGTCA-GATGTGTTT
TAGTTGACTCTCGTGAGGC-------------------------------------------------------------
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>chr3B_687
--------------------------------------------------------------------------------
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--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
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--------------------------------------------------------------------------------
----------------------------------------------------------------------------TTGC
ATGGTCGCTAGTTGTT-TTT--------------------------TTTCATGCGAATACTCAAGAATCTAGGCTTGCAT
TGTTTTTT-ACTTGTTT-AATCTGTCAAGACTATGTACATGCAGAAAC--TTTGCCTTTCCCAATTAGCGCCTATGAAAG
CTGGTTATGTTAGT------------------------------------------------------------------
------------------------------------GGCATCAGCAATCACCCAAGAATTTATAATATGCAGAAACATTT
TAGGATAATGA--TTTGTTTCCTGATGGCTCCAACAACGCTGGCTTTGTTGGACTCTGTTTGTCTTCACTTAA--TTTAT
CTTTTTT-AAT--ACCAGTGTCTAGCTGCTGTGAAATGGACATTTTGTATCAGTGCAAGGAGATCTTAAAGATTCAGAAG
TTTAGGCGATTGGCGTCTTATGCTGGATTCTATTCCTTCACTACACTCGTTACCTATGCTTACACAAGCAATACGTATGT
CATTGCTGACTTACCCTTTTT-CCACAGTTGCAAACTCTTGTGACTTCTTGTTCTTTACCACCAAAATTCTTCTCTCTCT
GAGG--TTACTGCAGGACAAGAGCTGGCATTTCGAGGGCCGATCAGTATTATGCTTCCTACCCTTCTGG-----------
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------------------------------------
>SNPs
-----------S-------------------------S---------------S--------S---S-SS----S-----
-------SS-S-----------------S--------------------SS-----------------------------
S-------------------------------------------------------------------------------
-------------------------------------S-----------S--------S------------S--------
---------------------------------------------------------S-----S---S------------
---------S---------------------------------------S------------------------------
-----------------------------------------------S-----------------------S--------
-------------------------------S---------------------S--------------------------
----------------------S-------S-------S---------------------------S-----------S-
------S-------------------------------------------------------------------------
-----------------S--------------------------------------------------------------
----------------SSSS------------------------------------------------------------
-------------------------------------S------------------S-----------------------
--------------------------------S-----------------------------------------------
--------------------------------------------------------------------------------
-----------------------------------S-----------S--S-----------------------------
------S-------------------------------------------------------------------------
------------S-------------------------------------------------------------------
--------------------------------------------------------------------------------
-------------S------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
------------------------------------------------S-------------------------------
--------------------------------------------------------------------------------
-----------S-------S------------------------------------------S-----------------
-----------------------------------------------------S--------------------------
--------------------------------------------------------------------------------
------------------------------S-S-------S---S----S----SSSSS------------------S--
-----S----------S---------------S-----------------------------------------------
-------S---S----------S-------------S-----------------------S--------SS---------
--------------------------------S-----------------------------------------------
S-----------------------------------------------------------S---------S-SSSS----
------------S-----S-----S---S---------S---------------------S--------S----------
------------------------------------------------S---S---------S-----------------
-------------------------------------S------------------------------------------
------------------------------------
>forward_75
-------------------------------------------------------GGCAAGCGAACGTCATTTGA-----
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>reverse_1373
--------------------------------------------------------------------------------
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------------TAGGACAAGGGCTGGCATTT------------------------------------------------
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------------------------------------
>forward_1287
--------------------------------------------------------------------------------
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--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
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--------------------------------------------------------------------------------
------------------------------------------------------------------AGCAATACGTATGT
CCCTGCC-------------------------------------------------------------------------
--------------------------------------------------------------------------------
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------------------------------------
>reverse_2297
--------------------------------------------------------------------------------
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--------------------------------------------------------TGTAGATGCTGGTTGGCTCC----
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------------------------------------
