>input_sequence_69879
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-------------------------ATGCCGATGGAGCAGGCCTTCATGCACTGCGACAAAGACACCCTCAAGATGGCCA
TGCTCAAGCACGAGGAGACTTTCAGGCAGCAGGTATATAAGATCAGAATTCAGAAGCTACAAACTTTTTGCTTTTGCCTC
CCCGTCTCAAGAAGACTGTGGCCTCATGATTTGTGTACGTTGTTGCAGGTTCACGATCTCCATCGCCTATACAGAATTCA
GAAGCTTCTGATGCGGGACCTCAAGAGGGAGATCAAGAGCCAGCAGAGCGGCCTGTCCGCCTCCCCCAACGGCTCCCCGG
GCGCCGAGTACGACCACCACCGCAGGGCGAGCGCGCTCGACGCGTCCTCCTACGAGCAACAGTGGCAGTACGGCGCCACC
CGCCGCGGCAGCCACGC------GGCGGCGACTCCTCGCGCCGCGCAGGCGCAGCTGAGCCCGGAGGCGACCGACGACGA
GGAGGCGGAGCTGGAGCTCACGCTCGCCGTGGGCAGCGGCGGCAAGAAACGGTACAGCGACGGGCACTGCTCCCCCGGGG
AGAGCTTCTCGTCGTCCACGACGGAGTCGGACACGCTCACGGGCGGCCAGGACTGGCAGCAGGCGCAGGCGCAGCACCAG
CTGGTCGGCACTGGCGCAGGCGCGGGCTCGCCCTACCACAAGCGGAGGCCGGCAGGGTTCGGCGCGGAGCAGGTGGAGGA
CGGCGGGGT---GCAGCAGCCTTCTCCGCTGCTGTTCCACTGGCTCAGCCTACGGATGGCATGA----------------
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>chr5D_1_TraesCS5D01G410300
TCCGTTTCAGGGATATTAATTCTCTA----TCAGCAGATCCATGATCGCACAACCATACCCGGGCATGTAATTTATGTAC
AATGT-GGGTGGCCCGTTCCTTACTCAACCTCCGGTCCTGTCCCTTCTGCTCGGCTCAGCCGCTGCATGCCGCAAGAGCA
AGGCC--AGAGCGAGAGAGAGGGAGAGAAAGATACTCCTAGTCGGCCTGCAGTC--------------------------
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-CTAGTGTACTCCGTTGCTTG----GCATGCCTCCCTGCAGTGCAGCGCAGGCCTGGTTAAAATACCAC---TGTGAAAG
GAATCTTACATCATTCGTGTCTTGTCCCCTCC-----CCCTTCTCTCTTTTCCTTCTCTTTCTTCTTCAGAGAG------
----GAGGAGAGTGAGAGAGAGGGAGAGGGACGGATGGAGACGACGGTCTGCTGGTTGATGTGTATAAAAGGGAAAGCCT
GTGGCCTTTGGAGCCATACAATGATCAGAAACCGATAGCGAGAAGAGAAGAGGAACAGGGCTCAGTGAGTGGTAGTTGGA
GCTCAGTGGCACTTCAGTTCTTGAGTCACTTCTCTGACATCT--AGTAATTGAGAGGTGAGAAATTAGCTCAT-----TT
CCCTCTCTTCTTTCCCCTTACGATCCGGTGCTCATCAATCTGCAATGCTCTGTTCAATCATTTTTAGGCCTTTTCAGGCT
TCTTTTCT-CCTTTGGGTTGTGACTTGCTTCAGAATACAGTTACTCCAGCAGAGAGATTCTCCTGTCATGAACACTGTTG
TTCTTCCCCTCTTTTCC-TTCTTTTTCCTCCTCTGAGTCCAGTGCCCGATTCTCGATTCCACTTCGAAAGCTCCAATTGT
GTGGCTGCATTGTAGTACGAGAGATCAGCTCGTATTCTCACTTTCTGTTCAAGTTCATATCTGTATGGCAAGATACAGCG
TCGTGTAGTTAGAAACAGATGGAGCAGAGGCTTATGTTCTACCTATTTCTCCATGCAGGTCCGGCGAAGAAGAAGAAGAA
ACAGAGCAAGAAAGGGATCGCCACAATGCCGATGGAGCAGGCCTTCATGCACTGCGACAAAGACACCCTCAAGATGGCCA
TGCTCAAGCACGAGGAGACTTTCAGGCAGCAGGTATATAAGATCAGAATTCAGAAGCTACAAACTTTTTGCTTTTGCCTC
CCCGTCTCAAGAAGACTGTGGCCTCATGATTTGTGTACGTTGTTGCAGGTTCACGATCTCCATCGCCTATACAGAATTCA
GAAGCTTCTGATGCGGGACCTCAAGAGGGAGATCAAGAGCCAGCAGAGCGGCCTGTCCGCCTCCCCCAACGGCTCCCCGG
GCGCCGAGTACGACCACCACCGCAGGGCGAGCGCGCTCGACGCGTCCTCCTACGAGCAACAGTGGCAGTACGGCGCCACC
CGCCGCGGCAGCCACGC------GGCGGCGACTCCTCGCGCCGCGCAGGCGCAGCTGAGCCCGGAGGCGACCGACGACGA
GGAGGCGGAGCTGGAGCTCACGCTCGCCGTGGGCAGCGGCGGCAAGAAACGGTACAGCGACGGGCACTGCTCCCCCGGGG
AGAGCTTCTCGTCGTCCACGACGGAGTCGGACACGCTCACGGGCGGCCAGGACTGGCAGCAGGCGCAGGCGCAGCACCAG
CTGGTCGGCACTGGCGCAGGCGCGGGCTCGCCCTACCACAAGCGGAGGCCGGCAGGGTTCGGCGCGGAGCAGGTGGAGGA
CGGCGGGGT---GCAGCAGCCTTCTCCGCTGCTGTTCCACTGGCTCAGCCTACGGATGGCATGAAGCTAGCCATGGAATG
GAAGGAAACCGACTGG-----------------------CGTAGCTAGTGGCAGTCAGTTTGACTTCCTGTTTGTTGAGC
TGTAGTAGGAGTACTGCTATGTTTCTGTGCTTTCAGCTTAGTCTTGGATCAAGCTAATCTAAAAA-TAATT-AACATGTC
GTTGAGCGTAATGTAGGAGCCACTTTCCACAGTTA---------------------------------------------
--------GCTTTCCAGGCGAAGCTAAGC---ATGGTTGGCTCTCAGTGCAAGTAGTTTAATTTTGGTTTGCTTTTGTGA
GTGGGTGACTTTGTCTGTTATTTTA-------------------------------------------------------
---------------------------------------------------------------------------AGGGG
CAGTCTTTGGGTATGAAATCAAATTCACAAGAACTAAGAACAGAATTTCCCATCGAATGAGGATTTGTGGCT-CTCGGTG
CTATACCCCTATATGAATACAGCATTAAAAATAATATCAAAAAGTTCTAAAACATTCTGGAATTTTAGGATATCAAACGT
GGGTTTCATTATACACCTGTGTTCAGTTTCGTGGAAAATGGATGCCAGAGGTAATCTCCGT-AAAAAAAAGTCAAAACAT
TCCTATGTATAGAAAAGACCACGACCACCCATTCGCGACGAAATTGAACATGGGTGTACAGTCGGCACCCAGATTTGATA
TCCCAAAATTTCAGAATT-TTTAAAATTTCCCCGTATTTATTTTTAGTACTATAT------TCATATAGAGGTGCCGCGC
TCCAATGCATTTCTCGTTTCCCCTT---TCCTTTCTTAGGAGAATATCTGAACTTAAGACTATAGTGGTGGCCCATAAGC
CCATGGACATTCGTGGGCAACATCTTAGTTGTGCATGTAACTCTTGGGGGTCCGCTATCACCTAAGGGACACTTTTGTGG
TTTGAGAGAGTGCCATGTGATGCACCTGCCGCCGTCATGTGTCGCGTGCTAGCTTCTCTCTCTGAATTGTAGTTTACTTA
TATTTTTGTACGCGTTTTCAGGATTTAGATGAGATTTTTTTGCTTTACGGTTTTTGCCTTGTTTTTCTTAGGCTTTGGAG
ATTTTCT
>chr5B_1
TCCGTTTCAGGGATAGTAATTCTCTA----TCAACAGATCCATGATCGCACAACCACACTCGGGCATGTAATTTATGTAG
GGTGTGGGGTGGCCCGTTCCTTACTCAACCTCTGGTCCTGTCCCCTCTGCTCGGCTCAGCCGCTGCATGCCGCAAGAGCA
AGTCCAGAGCGAGCGAGAGAGAGAGAGAAAGATACTCCTAGTCGGCCTGCAGTC--------------------------
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-CTAGTGTACTCCGTTGTTTGGCATGCATGCCTCCCTGCAGTGCAGCGCAGGCCTGGTTAAAATACCAC---TGTGAAAG
GAATCTTACATCATTCGTGTCTTGTCCCCTCC-----CCCTTCTCTTTTCCTTCTCTCTTTCTTCTTCAGAGGAGAGTGA
GAGAGAGGAGAGAGGGAGAGAGGGAGAGGGACGGATGGGGACGACGGTCTGCTGGTTGGTGTGTATAAAAGGGAAAGCCT
GTGGCCTTTGGAGCCATACAATGATCAGAAACCGATAGCGAGAAGAGAAGAGGAGCAGGGCCGAGTGACTGGTAGTTGGA
GCTCAGTGACACTTCAGTTCTTGAGTCACTTCTCTGACATCTAGAGTAATTGATAGGTGAGAAATGAGCTCAT-----TT
CCCTCTCTTCTTTTCCCTTACCATCCGGTGCTCATCAATCTGCAATGCTCTGTTCAATCATTTTTAGGCCTTTTCAGCCT
TCTTTT-T-CCTTTGGGTGGTGACTTGCTTCAGAATACAGTTACTCCAGCAGAGAGCTTCTCCTGTCATGCACACTGTTG
TTCTTCCCC-TCCTTTATTTCCTTTCCACCCTCTGAATCTAGTGCCCGATTCTCGTTCCCACTTCGAAAGCTCCAATTGT
GTGCCTGCATTGTAGTACGAGAGATCAGCTCGTATGCTCACTTTCTGCTCAAGCTCATATCTGTATGACATGATACAGTG
TAGTGTAGTTGGAAATACTTGGAGCAGAGGCTTATGTTCTACCTATTTCTCCATGCAGGTCTGGG---GAAGAGGAAGAA
ACAGAGCAAGAAAGAGATCGCCACAATGCCGATGGAGCAGGCCTTCATGCACTGCGACAAGGACACCCTCAAGATGGCCA
TGCTCAAGCATGAAGAGACCTTCAGGCAGCAGGTATATAAGATAAGAATTCATAAGT--------------TTTTGCCTC
GCCGTCTCAT---GACTGTGGCCTCATGATTTGTGTACGTTGTCGCAGGTTCACGATCTCCATCGCCTGTACAGAATTCA
GAAGCTTCTGATGCGGGACCTCAAGAGGGAGATCAAGAGCCAGCAGAGCGACCTGTCCGCCTCCCCCAACGGCTCCCCGG
GCGCCGAGTACGACCACCGCCGCAGGGCGAGCGCGCTCGACGCGTCCTCCTACGAGCAGCACTGGCAGTACGGCGCCACC
CGCCGCGGCAGCCACGC------GGCGGCGACTCCGCGCGCC------GCGCAGCTGAGCCCGGAGGCGACCGACGACGA
GGAGGCGGAGCTGGAGCTCACGCTCGCCGTGGGCAGCGGCGGCAAGAAGCGGTACAGCGACGGGCACTGCTCCCCCGGGG
AGAGCTTCTCGTCGTCCACGACGGAGTCGGACACGCTCACGGGCGGCCAGGAGTGGCAGCAGGCGCAGGCGCAGCACCAG
CTGGTCGGCACTGGCGCAGGCGCGGGCTCGCCGTACCACAAGCGGAGGCCGGCAGGGTTCGGCGCGGAGCAGGCGGTGGA
CGGCGGGGT---GCAGCAGCCTTCTCCGCTGCTGTTCCACTGGCTCAGCCTACGGATGGCGTGAAGCTAGCCATGGAATG
GAAGGAAACCGACTGG-----------------------CGTAGCTAGTGGCAGTCAGTTTGACTCCCTGTTTGTTGAGC
TGTAGTAGGAGTATTGCTATGTTTCTGTGCTTCCAGCTTAGTCTTGGATCAAGCTAATCCAAAAA-TAATTTAACTTGTT
GCTGAGGATTATGTAGGAGCCACTTTCCACAGGTGGAGAGGGGTGAATGTAGGGGCTTTTCAGATTAAGCTAAGCTTAAT
TTTAAGGGGCTTTTCAGATGAAGCTAAGCTTAATTGTTGGGTCTCAGTGCAAGTAGCTTAATTTTGGTTTGCTTTTGTGA
GTGGGTGACTTTGTCTGTTATTTTA-------------------------------------------------------
---------------------------------------------------------------------------AGGGG
CAGTCTTTCGGTATGAATTCAAATTCACAAGAACTAAGAACAGAATTTCCTATCGAATGAGGATTTTGTTGCCCTCGGTG
CTATACCCCTATATGAATATAGCATTAAAAATAATATCAAAAAGTTCTACAACATTCTGGAATTTTAGGATATCAAACAT
GGGTTTCATTATACACTTGTGTTCAGTTTCGTGGAAAATGGATGCCAGAGGTAATCTCGGTAAAGAAAAAGTCAAAATAT
TCCTATATATAGAAAAGACCAAGACCACTCATTCGTGACGAAATTGAACATGG--GTACAGTCGGCACCCAGATTTTATA
TTCCAAAATTTCATAATT-TTTAAAATGTCCCCGTATTTATTTTTAGTACTATATTCATATTCATATAGGGGTGTGGAGC
TCCAATTCATTTCTCGTTTCCCTTTTCCTCCTTTCTTAGGAGAATATCTGAACTTAAGACTACAGCGGTGGCCCATAAGC
CCATGGACATTCGTGGGCAACATCTTAGTTGTGCATGTAACTCTTTGTGGCCCATAAGC---------------------
------------CCATGTAATGCACCTGCCGCCGTCATGTGTCGCGTGTTGGCTTCTCTCTCTAAATTGTAGTTTACTTA
TATTTTTGTATGCGTTTTCAGGATTTAGATGGGATTTTTTCGCTTTATGGTTTTTGCCTTGTTTTTCTTAGGCTTTGGAG
ATTTT--
>chr5A_1
TCCGTTTCAGGGATAGTAATTCTCTACTTATCAACAGATCCATGATCTCACAGCCACAGTCGGGCATGTAAATTATGC--
-ATGT-GGGTGGTCCGTTCCTTACTCAACCTCTGGTCCTGTCCCCTCTGCTCGGCTCAGCCGCTGCATGCCGCAAGAGCA
AGGCCAGGCC---AGAGAGAGAGAGAGAAAGATACTCCTAGTCGGCCTGCAGTCCTAGGTGGTGTTTGTTTCCAGAGACT
TTTTGGTGCAGGGACTAGAAAAAGTCCCTACCAAACCAAACAGGATGGGACTTTTTTGGAACTTTTTGCTAAAAGTCCTT
AGAAGCACCTCCTTAAGAGTCTTTTTTAAAAAGTCCCAGGGACTAAAAAAAAGTCCGAGGACTAGAGAAACAAACACCAT
CCTAGTGTACTCCGTTGCTTGGCAT----GCCTCCCTGCAGTGCAGCGCAGGCCTGGTTAAAATACCACCACTGTGAAAG
GAATCTTACATCATTCGTGTCTTGTCCCCTCCCCTCGCCCTTCTCTTTTCCTTCTCTCTTTCTTCAGAGAACAGAGTGTG
TGT----GAGAGAGAGGGAGAGGGAGAGGGACGGATGGAGACGACGGTCTGCCGGTTGATGTGTATAAAAGGGAAAGCCT
GTGGCCTTTGGAGCCATACAATGATCAGAAACCGATAGCGGGAAGAGAAGAGGAACAGGGCCGAGTGAGTGGAAGTTGGA
GCTCAGTGGCACTTCAGTTCTTGAGTCACTTCTCTGACATCT--AGTAATTGATAGGTGAGAAATGAGCTCATCTCATTT
CCCTCTCTTCTTTCCCCTTACGATTCTCTGCTCATCAATCTGCAATGCTCTGTTCAATCATTTTTAGCCCTTTTCAGGCT
TCTTTT-TTCCTTTGGGTTGTGACTTGCTTCAGAATACAGTTACTCCAGCACAGAGATTCTCCTGCCATGCACACTGTTG
TTCTTCCCCCTCCTTTATTTCCTTTCCCCCCTCCGAATCTAGTGCCCGATTCTCCATCCCACTTCGAAAGCTCCAATTGT
GTGGCTCCATTGTA--------------------TTCTCACTTTCTGTTCAAGTTCATATCTGTATGGCGATATACAGTG
TAGTGTGGTTAGGAACACTTGGGGCAGAGGCTTATGTTGTAGCTATTTCTCCATGCAGGTCCGGC---GAAGAAGAAGAA
ACAGAGCAAGAAAGGGATCGCCACAATGCCGATGGAGCAGGCCTTCATGCACTGCGACAAAGACACCCTCAAGATGGCCA
TGCTCAAGCACGAGGAGACCTTCAGGCAGCAGGTATGA-------------AGAAGCTACAACCTTTTTGCTTTTGCCTC
CCCGTCTCAAGAAGACTGCGGCCTCATGATTTGTGTACGTTGTCGCAGGTTCACGATCTCCATCGCCTGTACAGAATTCA
GAAGCTTCTGATGAGGGACCTCAAGAGGGAGATCAAGAGCCAGCAGAGCGGCCTGTCCGCCTCCCCCAACGGCTCCCCGG
GCGCCGAGTACG---ACCGCCGCAGGGCGAGCGCGCTCGACGCGTGCTCCTACGAGCAGCAGTGGCAGTACGGCACCACC
CGCCGCGGCAGCCACGGGGACGGGGCGGCGACTCCTCGCGCGGCGCAGGCGCAGCTGAGCCCGGAGGCGACCGACGACGA
GGAGGCGGAGCTGGAGCTCACGCTCGCCCTGGGCAGCGGCGGCAAGAAGCGGTACAGCGACGGGCACTGCTCCCCCGGGG
AGAGCTTCTCGTCGTCGACGACGGAGTCTGACACGCTCACGGGCGGCCAGGACTGGCAGCAGGCGCAGGCGCAGCAGCAG
CTGGTCGGCACTGGCGCAGGCGCGGGCTCGCCGTACCACAAGCGGAGGCCGGCAGGGTTCGGCGCGGAGCAGGCGGAGGA
CGGCGGGGTGCAGCAGCAGCCTTCTCCGCTGCTGTTCCACTGGCTCAGCCTACGGATGGCGTGAAGCTAGCCATGGAAGG
AGAACGACCGGCGCATGCATGTACCGTCGCCGTCTGCCTCGTAGCCACTGGCAGGCAGTTTGACTCCCTGTTTGTTGAGG
CGTAGTAGAAGTACTAGTATGTTTCTGTGCTTCCATCTTAGTCATGGATCAACCTAATCCAAAAAATAATT-AACTTGTC
GTTGAGGGTGATGTAGGGGCCACTTTCCACAGGTGGAGAGGGGTGAAATGT-----------------------------
----AGGGGCTTTTCAGATGAAGCTAAGC---ATGATTGGCTCTCAGTGCAAGTAGCTTAATTTTGGTTTGCTTTTGTGA
GTGGGTGACTTTGTCTGTTATTTTAGGCTTTGTTCAGTTAATCCTCTTCCCAAAAGGATTGGAGGGGATTGGCAAGGATT
GGTTCGTATTTTGACTTTATCCCCCTCAAACCCCTTCAATCCACTAGGATTCATACGCAACCGTACAAGGCCTTAAGGGG
CAGTCTTTCGGTATGAAATCCAATTCACAAGAACTAAGAACAGAATTTCCGATCGAATGAGGATTTGTGGCT-CTCGGTG
CTATACCCCTATATGAATATAGCATTAAAAATAATATTTAAAAGGTCTAAAACATTCTGTAATTTTAGGATTTTAAACGT
GGGTTTCATTATATACCTGTGCTCAGTTTCGTGGGAAATGGATGCCTGTGGTAATCTCGGT-AAAAAAAAGTCAAAACAT
TCCTATGTATAGAAAAGACGACGGCCACCCATTCGCGACAAAATTGAACATGG--GTAT--------CCCAGATTTGATA
TCCCAGAATTTCAGAATTCTTTAAAATTTCCCCGTGTTTATTTTTAGTACTATATTCAT------ATAGAGATGCGGAGC
TCCAATGCATTTCTCGTTTCCCTTTTCCT---TTCTTCGGAAAATATCTGAACTTAAGACTACAGCGGTGGCCCATAAGC
CCATGGACATTCGTGGGCAACATCTTAGTTGTGCATGTAACTCTTAGGGGTCCGTTATCACCTAAGGGACACTTTTGTGG
TTTGAGAGAGTGCCAAGTAATGCGTCTGCCGCTGTCACGTGTGGTGTGCTGGCTTCTCTCTCTGAATTATAGTTTACTTA
CATTTTTGTACGCATTTTCAGGATTTAGATGGGATTTTTTTGCTTTACAGTTTTTGCTTTGTTTTTCTTAGGCTGTGGAG
ATTTT--
>SNPs
---------------S-----------------S----------------------S--S-------------------S
S-------------------------------S-----------S-----------------------------------
---------S-S---------S----------------------------------------------------------
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----------------------------------------------S--SSSSS--------------------------
------------S-------------------------------------------------------------------
-------------------------------------------------------------SS-----------------
-----------------------------------------------------S-----------S--------------
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------S---------------------------------------------------------------S---------
---------SSSS--SS----S---S--S-------S--S-----------------S----------------------
------------------------------------------------------------------------------S-
-S---------------SS----------------------------------------------SSS------------
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-------------------S-----------------------S------------------S-----------------
-------------------------------------------S------------------------S-----------
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------------------S---------------------------------------S---------------------
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------------------------------------------------S-------------------------------
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--------------------------------S----------------------------------------S------
------------------------------------------------------------S-------------------
-----------------------------------------------------------------S--------------
--------------------------------S--------------------------S---------------S----
------S--S----------------------S-S---------------------------------------------
-------------S---SS-------------------------------------S-----------------------
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--------S-----------------------------------------S-----------------------------
-------------------S------------------------------------------------------------
----------------------------------------------------------S---------------------
-----------------------------------------------------SS-------------------------
---------------------------------------------------------------------------S-S--
----------------------S---------------------------------------S--S--------------
---------------------------------------------S--------S-------------------------
------------------S-------------------------------S-----------------------------
-------------------------------S------------------------------------------------
-----SS
>forward_1018
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--------------------------------------CCAGTGCCCGATTCTCGATT----------------------
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>reverse_2258
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-----------------GCGAAGCTAAGCATGGTTGG-------------------------------------------
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