>input_sequence_69864
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----------------------------ATGAAGAGCAGGAAGAGCTACGGGCAGCAGCAGAGCCACCTGCTGAGCCCGG
TGGGCAGCCCGTCGTCGGACAACGGCGGGGGCGACTCGCCGGCCAAGGAGCAGGACCGGTTCCTCCCGATCGCCAACGTT
AGCCGCATCATGAAGCGCTCCCTCCCGGCCAACGCCAAGATCTCCAAGGAGGCCAAGGAGACGGTGCAGGAGTGCGTGTC
CGAGTTCATCAGCTTCGTCACCGGCGAGGCCTCCGACAAGTGCCAGCGGGAGAAGCGCAAGACCATCAACGGCGACGACC
TGCTCTGGGCCATGACCACGCTCGGCTTCGAGGTCTACGTCGCGCCGCTCAAGGCCTACCTCAACCGCTACCGCGAGGTC
GAGGGCGAGAAGGCCGCCGTGGTCGGCGGCTCGCGGCTCGGCGACGACGACGCGCATTCCTCCCTCTCTGCCGCCGGCGA
CGCCCTGGCGCCGCAGTACACGCACGGGGCTGGCGACCGCGGCGTCCAGGACGGCGACTTGGGCGGCCACGACGCGCACG
TCGGGCTCATGATGGGCGTCAACATGGGGTTCAACCCCGGGACCGGGACAACGTTCTACGCGGCGCCGGGTGCGGCGCAT
GGACGGAGGGCGTACGGCGGCGGGGAGGGTGCAAGGGGGATTGATTTCGAGGCTGCCTTCGGTGGCGATCGCGGGAAGAA
CGGCGCCGGAGGCGAAAGGGAGTTCGCTGGCCACCTCCACGGCGCGGTGCAATGGTGA----------------------
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>chr2A_1_TraesCS2A01G359400
ACACGATTGTCTTATCCCACCAACCATGCACAATCGGAGAGCAACAACGGCCTATGAGAGGCCTTAAAAGACTAGCCTGA
TGGGATCCAAACACCCCCGCCCTTATAAGTCATGCTCTGCCTCCTCTCATAACTCATGTGAGATTAAACCCAACTTGAAC
GACTATGGGTACTAAGTCGTCAGTAACAGTAAAGGAGATTGGTTAGTAGATTACTTGCTCATCCCGGCAGAATAAAATAT
AGCATATATTATTCCTATTCAAATATTGTCTTTAATTAAGTGTTTAGATTTCTTTTGTATGTGAAGCCAAAATACGAGAG
GGATGATTCCCTCTTTTTTAGGTAAAAAAGGTTGTCCCTCATTGGTTCCACTAATGTATTATGCCTTGCCATTGGCCTAG
GAACCTCAACTCTTCGTTGATACCATTTCCTGAGGTGACATGGGTGGTGGCACAACCTCATGCGAACTGTGTAATGGAAT
GTTTTTCGGAATTTCGGAGCACTAGTTGAATGATTTTTTCGCTGATTTTCTGCCTATTTACGACTATGGTCCGACGAAGG
GGAGGGGGAAGGAGCTATGAGGATATATGA--------------------------------------------------
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----TTTTGTGTTATGGCTGCACAAATCTCAAAGCGAACATAGTT-TTCTTTTCCAGAAAGCAGTATTACCTCCGAACTC
TGCATCCAGCGATGCACACAGCCATCAAAGCGAACGTAGTATGTCAAGGGAATGCAGCTGGACTTTAATTTTGAGCAGGG
AAATAAGGTACCTGATGCCTTAGACAAAGTCTAGCTCATCTAATCATACTTTTCTT--GTAAGCTAAAGCCAGAATTGCA
TCCGTCCGCATCGATGCCGTCCTCCCACTCGCATCTCTCCATCTTTAAATGGAGATCGCCCCGCTCGATACCTCCTCAAC
TCACCCTCTCACTCGCCTACTGCCGGTACTACTGCTGCTGCTG-----------CTGCTAGCTAGCCTGGACATTTTTTT
TAGCAGAAGAGGGGCAGCTAGCGTAGACATGAAGAGCAGGAAGAGCTACGGGCAGCAGCAGAGCCACCTGCTGAGCCCGG
TGGGCAGCCCGTCGTCGGACAACGGCGGGGGCGACTCGCCGGCCAAGGAGCAGGACCGGTTCCTCCCGATCGCCAACGTT
AGCCGCATCATGAAGCGCTCCCTCCCGGCCAACGCCAAGATCTCCAAGGAGGCCAAGGAGACGGTGCAGGAGTGCGTGTC
CGAGTTCATCAGCTTCGTCACCGGCGAGGCCTCCGACAAGTGCCAGCGGGAGAAGCGCAAGACCATCAACGGCGACGACC
TGCTCTGGGCCATGACCACGCTCGGCTTCGAGGTCTACGTCGCGCCGCTCAAGGCCTACCTCAACCGCTACCGCGAGGTC
GAGGGCGAGAAGGCCGCCGTGGTCGGCGGCTCGCGGCTCGGCGACGACGACGCGCATTCCTCCCTCTCTGCCGCCGGCGA
CGCCCTGGCGCCGCAGTACACGCACGGGGCTGGCGACCGCGGCGTCCAGGACGGCGACTTGGGCGGCCACGACGCGCACG
TCGGGCTCATGATGGGCGTCAACATGGGGTTCAACCCCGGGACCGGGACAACGTTCTACGCGGCGCCGGGTGCGGCGCAT
GGACGGAGGGCGTACGGCGGCGGGGAGGGTGCAAGGGGGATTGATTTCGAGGCTGCCTTCGGTGGCGATCGCGGGAAGAA
CGGCGCCGGAGGCGAAAGGGAGTTCGCTGGCCACCTCCACGGCGCGGTGCAATGGTGAAGATGGATGTATTCTCGACGGG
AGTACACAAGTTAATCTGCCTTCTGATAAATGCTGCTACTCTTCTTAATCACCTACAGACTAATACAGTCATCATGATTC
CCTTTTT-ACACGAAAAATATTGTACGAGCGGTTCCAGTTATTATCTTTTGTTACAC----TTTAATGAAATATTCGAGC
GCGAATCAACCTGTGGTTGAGTTGGTTAGGTGGACAGTGGTATCCCCAACCCACCAGAGTTCAAGCGCCTACGGTGACTT
CGTAAATCTCAAGATGATATGCCGGCTCAGTCTCTCGGAGGTGCTCATAGGGGTAGGGTGTGTGGGTGCGCGTTCATAGG
AATGAGTGTATGCGCGTGTATATGGGCACTTGTGTCTGTACTGATGCTTAAAAAAAATGAAATATTCGAACGATGTGCCC
ACGAGTGTGACAAATGGCACAATCCAGTTTATTCTGCAATCAGATCTCCGGTTAACAAAATTAATTAATCAGCCATAGCA
ATCAAAACTATTCAAACCTCCAAAGGACTGCGTCGTACTAGCATATTATTTTCCTAGTGCAAAGCCTGCAGCTGAAACAA
GTAAC-TTAGTCAGACCTTAAGCTCCCGT----CATGGTTAATCTAAGCAAT---GAAGAGTATCCAAGTTGTCCTCACA
TATTTTCTATTATTATTGTGCGATGTGATGGGCGCGAATATTTGAACCCGAAAAAGCATAAGAAGTATAGAAGAAAAAGC
TTCTGTGAGAGAGCTAGGGATAAGGGTGGC------------ACCTCTCTCACAATGACCCTTTGCGCTTTATCCTGCCC
TTTTAGAAATGCACAAGATACCATATTCGATCAAAGATATTTTTTGCGAGTACATGGCATGTATCTTCTTCTTTTTTGAG
TTGGCGTATGTATCTTCAAATAGTAGTTGAAGTCCTTTTCAAAGA-AAATGTATGTAAGAGTAGCTTCAAGTGAGAGT--
----CCTCCCTCCGCTCTCCGTGTATTGCACATTTGCTTCGCGTGGATCC
>chr2B_1
ACACGAGTGTCTTATCCCACCAATCATGCATAATCGAAGAGCAACAACGACCTATGAGAGGCCTTAAAAGACTAGCCTGA
TAGGATCCAAACACCCCTGCCCTTATAAGTCATGCTCTGCCTCCTCCCATAACCGATGTGAGACTAAACCCAACATGAAC
GACTGTGGGTACCAAGTCGTCGGTAACAATAAAGGAGATTGGTTAGTAGATTACTTGTTGATCCTGGTAGAATAAAATAT
AGCATATATTATTCCTATTAAGATATTGTCTTTAATTAAGTGTTTAGATTTGTTTTGTATGTGAAGCCAAAGCACGAGAG
GGATGATTCCCTCTTTTTTAGGTAAAAAAGGTTGCCCCTCATCGGTTCCACTAATGTATTATGCCTTGCCATTGGCCTAG
GAACTTCAACTCTTCATTGATACCATTTCCTGAGGTGACGTGGGTGGTGGCACAACCTCATGTGAACTGTGTAATGGAAT
GTTTTTCAGAATTTCAGAGCACTAGCTGCATGATT-TTTCCCTGGTTTTCTGTCTGTTTATGACTATNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNTTTTGTGTTATGGCTGCACAAATCTCAAAGCGAATGTAGT--TTTTTTTTAAAAAAGGAGGATTACC-CCGGACTA
GGCGTCCAGCGATATACACAACCATCAAAGCGAACGTAGTATGTCAAGG-AATGCAGCTGGAC-----TTTTGAACAAGG
AAATAAGGTACCCGATGCCTTAGACAAAGTCTACCTCATCTAATCATACTTTTTTTTGGTAAGCTAAAGCCAGAATTGCT
TCCGTCCGCATCGATGCCGTCCTCCCACCCGCATCTCTCCATCTTTAAAAGCAGCTCACCCTGCTCGATACCTCCTCAAC
TCCTCCTCTCACTCACCTAGTACCAGTACTACTGCTACTGCTG-----------CG--------GCCTGGACATTTTTTT
GAGCAAAAGAGGGGCAGCTAGCGTGGACATGAAGAGCAGGAAGAGCTACGGGCAGCAGCAGAGCCACCTGCTGAGCCCGG
TGGGCAGCCCGTCGTCGGACAACGGCGGGGGCGACTCGCCAGCCAAGGAGCAGGACCGGTTCCTCCCGATCGCCAACGTT
AGCCGCATCATGAAGCGCTCCCTCCCGGCGAACGCCAAGATCTCCAAGGAGGCCAAGGAGACGGTGCAGGAGTGCGTGTC
CGAGTTCATTAGCTTCGTCACCGGCGAGGCCTCCGACAAGTGCCAGCGGGAGAAGCGCAAGACCATCAACGGCGACGACC
TGCTCTGGGCCATGACCACGCTCGGCTTCGAGGTCTACGTCGCGCCGCTCAAGGCCTACCTCAACCGCTACCGCGAGGTC
GAGGGCGAGAAGGCCGCCGTGGTCGGCGGCTCGCGGCACGGCGACGACGACGCGCATTCCTCCCTCTCTGCCGCCGGCGA
TGCCCTGGCGCCGCAGTACCCGCACGGGGCTGGCGACCGCGGCGTCCAGGACGGCGACGTGGGCGGCCACGACGCGCACG
TCGGGCTCATGATGGGCGTCAACATGGGGTTCAGCCCCGGGACCGGGACAACGTTCTACGCGGCGCCGGGTGCGGCGCAT
GGACGGAGGGCGTACGGCGGCGGGGAGGGTGCAAGGGGGATTGATTTCGAGGGTGCCTTCGGTGGCGATCGCGGGAAGAA
CGGCGTCGGAGGGGAAAGGGAGTTCGCTGGCCACCTCCACGGCGCGGTGCAATGGTGAAGATAGATGTGTTCTCGACGGG
AGTACACAAGTTAATCTGCCTTCTGATAAATGCTGCTACTCTTCTTAATCATCTATAGACTAATACAGTCATCATGATTC
CCTTTTTTACACGAAAAATGTTGTACGAGCGGTTCCAGTTATTATCTTTTGTTACAC----TTTAATGAAATATTCGAGC
G-------------------------------------------------------------------------------
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------------------------------------------------------------------------ATGTGGCC
ACGAGTGTGACAAATGGCACAATCCAGTTTATTCCTCAATCAGATCTCCGGTTAACAAAATTAATTAATCAGCCGTAGCA
ATCAAAACTATTCAAACCTGCAAAGGACTGCGTCGTACTAGCATATTATTTTCCTAGTGCAAAGCCTGCAACTGAAACAA
GCAACTTTAGTCAGACCTTAAGCTCCCGT----CATGGTTAATCTAAGCAATG----AGAGTATCCAAGTTGTCCTCACA
TATTTTCTATTATT---GTGCGATGTGATGGGCGCGAATATTTGAACCCGAAAAAGCATAAGTAG--TAGAAGAAAAAGC
TTCTGTGAGAGAGCTAGGGATAAGAGTGGC------------ACCTCTCTCACAATGACCCTTTGCGCTTTGTCCTGCCC
TTCTACAAATGCACAAGATACCATATTCGACCAAAGATATTTTTTGCGAGTACGTGGCATTTATCTTCTTCTTTTTTGAG
TTGGTGTATGTATCTTCAAATAGTAGTTGAAGTCCTTTTCAAAGAAAAATGTATGTAAGAGTAGCTTCAAGTGAGAGTGA
GAGTCCTCCCTCCGCTCTCCATGTATTGCACATTGGCTTTGCGCAGATCC
>chr2D_185
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------------------------AACAATAAAGGAGATTGGTTAGTAGATTAGTTGTTGATCGTGGCAGAATAAAACAT
AACATATATTATTCCTATTCAGATATAATATTTAGTTCAGTGTTTAGATTTCTTTTGTATGTGAAGCCAAAGCACGAGAG
GGATGATTCCCTCTTTTTTTGGTAAAAAAGGTTGTCCCTCATCGATTCCACTAATGTATTAGTCCTTGCCATTGACCTAG
GAACATCAACTCTTCGTTGATACCATTTCCCGAGGTGACATGAGTGGTGGCACAACCTCATGTGAACTGTGTAGTGGAAT
GTTTTTTGGAATTTCGGAGCACTAGCTGCATGATTTTTTCGCTGATTTTCTCCATGTTTACGACTATGGTTCGACGAAGG
GGAGGGGGAAGGAGCTATGAGGATATATGG--------------------------------------------------
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----TTTTGTGTTATGGTTGCACAAATCTCAAAGCGAACGTAGTTCTTTTTTTCCGGAAAGGAGGATTACCTCCGGACTC
TGCGTCGAGCGATGCACACAGCCATCAAAGCGAACGTAGTATGTCAAGGGAATGCAGCTGGCTTTTAATTTTGAGCAGGG
AAATAAGGTACCTGATGCCTTAGACAAAGTCTAGCTCATCTAATCATACTTTTTTT--GTAAGCTAAAGCCAGAATTGCA
TCCGTCCGCATCGATGCCGTCCTCCCACTCGCATCTCTCCATCTTTAAATGGAGATCACCCCGCTCGATACCTCCTCAAC
TCCTC---TCACTCACCTACTGCCAGTACTACTGCTGCTAGCTAGCTAGCTAGCCG--------GCCTGGACATTTTTCT
GAGCAAAAGAGGGGCAGCTAGCGTGGACATGAAGAGCAGGAAGAGCTACGGGCAGCAGCAGAGCCACCTGCTGAGCCCGG
TGGGCAGCCCGTCGTCGGACAACGGCGGGGGCGACTCGCCGGCCAAGGAGCAGGACCGGTTCCTCCCGATCGCCAACGTT
AGCCGCATCATGAAGCGCTCCCTCCCGGCCAACGCCAAGATCTCCAAGGAGGCCAAGGAGACGGTGCAGGAGTGCGTGTC
CGAGTTCATCAGCTTCGTCACCGGCGAGGCCTCCGACAAGTGCCAGCGGGAGAAGCGCAAGACCATCAACGGCGACGACC
TGCTCTGGGCCATGACCACGCTCGGCTTCGAGGTCTACGTCGCGCCGCTCAAGGCCTACCTCAACCGCTACCGCGAGGTT
GAGGGCGAGAAGGCCGCCGTGGTCGGCGGCTCGCGGCACGGCGACGACGACGCGCATTCCTCCCTCTCTGCCGCCGGCGA
TGCCCTGGCGCCGCCGTACCCGCACGGGGCTGGCGACCGCGGCGTCCAGGATAGCGACGTGGGCGGCCACGACGCGCACG
TCGGGCTCATGATGGGCGTCAACATGGGGTTCAGCCCCGGGACCGGGACAACGTTCTACGCGGCGCCGGGTGCGGCGCAT
GGACGGAGGGCGTACGGCGGCGTGGAGGGTGCAAGGGGGGTTGATTTCGAGGCTGCCTTCGGTGGCGATCGCGGGAAGAA
CGGCGCCGGAGGGGAAAGGGAGTTCGCTGGCCACCTCCACGGCGCGGTGCAATGGTGAAGATAGATGTGTTCTCGACGGG
AGTACACAAGTTAATCTGCCTTCTGATAAATGCTGCTACTCTTCTTAATCACCTATAGACTAATACAGTCATCATGATTC
CCTTTTTTACACGAAAAATGTTGTACGAGCGGTTCCAGTTATTATCTTTTGCTACACTTTGTTTAATGAAATATTCGAGC
G-------------------------------------------------------------------------------
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------------------------------------------------------------------------ATGTGCCC
ACGAGTGTGACAAATGGCACAATCCAGTTTATTCCACAATCAAATCTCCGGTTAACAAAATTAATTAATCAGCTGTAGCA
ATCAAAACTATTCAAACCACCAAAGGACTGCG-CGTACTAGCATATGATTTTCCTAGTGCAAAGCCTGCAACTGAAACAA
GTAAC-TTAGTCAGACCTTAAGCTCCCGTACGTCATGGTTAATCTAAGCAATGAAGAAGAGTATCCAAGTTGTCCTCACA
TATTTTCTATTATT---GTGCGATGTGAT-GGCGCGAATATTTGAACCCGAAAAAGCATAAGAAG--TAGAAGAAAAAGT
TTCTGTGAGAGAGCTAGGGATAAGAGTGGCACCTACTCTGGCACCTCTCTCACAATGACCCTTTGCGCTTTGTCCTGCCC
TTTTACAAATGCACAAGATACCATATTCGATCGAAGATATTTT-TGCGAGTAGATGGCATGTATCTTCTTCTTTTTTGAG
TTGGCGTATGTATCTTCAAATAGTAGTCGAAGTCCTTTTCAAAGAAAAATGTATGTAAGAGTAGCTT-----------GA
GAGTCCTCCCTCTGCTCTCCATGTATTGCACATTGGCTTCACGCGGATCC
>SNPs
------S----------------S------S-----S------------S------------------------------
-S---------------S----------------------------S------SS--------S----------S-----
----S-------S--------S------S----------------------------S-S----S---------------
---------------------S-------------------------------------------------SS-------
------------------------------------------S-------------------------------------
----S---------------------------------------------------------S-----------------
-------------------------S--S--------------------------S--------------S---------
-----------------------------S--------------------------------------------------
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---------------------------------------S--------S------------S--S----------S----
---S----------------------------------------------------------------------------
-----------------------------------------------------S--------------------------
---------------------------------------------------------S----------------------
--SS----------S---------S------------------------------SSSSSSSSS----------------
S----S------------------S-------------------------------------------------------
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-------------------------------------S------------------------------------------
S------------------S--------------------------------------S---------------------
---------------------------------S----------------------------------------------
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------------S-------------------------------------------------S-----S-----------
-------------------------------------------------------S------------------------
-------------------S------------------------------------------------------------
-SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS--------
----------------------------------SS--------------------------------------S-----
----------------------------------------------------------------------S---------
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--------------SSS------------------------------------------------SS-------------
------------------------S----------------------------------------------S--------
-----S--------------------------------------------------------------------------
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--------------------S-------------S--------S------
>forward_1176
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------------------------------------GTACTACTGCTGCTGCTGCT------------------------
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>reverse_2269
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----------------------------AGTCTCTCGGAGGTGCTCAT--------------------------------
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