>input_sequence_69863
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---ATGGTAAGTGAGTCTTGGTTAGAAAGGGGCGACAGATGATTGTGCAGCATGCCTAGATGCTGTGTTTGTAACCAGCT
TAGTTTGCAGGATCCCAAGGGTCTTGACAGCGATAAGTCGGCGAGTAGGCTCTATGTGGGCAATCTGGATTTTAGGATAT
CAGAGTGAGTTTT-CTCTAGCCCGTCTCCCTTCCAAGGTCGGCCTGGTGTTATGTGTAATCCAATATTATAGTGTGATTC
TCCAGGTCTGACGTTATCAAGATGTTCTCCCCCTATGGAAAGATCATAGCTGAGGATTTCCTGTTGCATACGCGTGGCCC
GAAGCGAGGCGAGCCTCGTGGTTATGCCTTTGTTCAGTACACTACCAAAGAGGTACGAGTGATACTCATTACTTCTTGCA
AATGTTGATGGGTCCTGGTAATTCTCACCTTTGCCACCTGAAGTGAGCATGCAGGAAGCTCAGTTGGCAAAGGAGAAGAT
GAATGGCAAGTTGGTCTGTGGACGTCCTGTGGTGGTTCACCTAGCGAGCGAGAAGTGTTTCCTAGATTCCGGTAATTCAC
AAAGAGCACTGAAAGACAAGAAACTGGCAGGTGGTTCGGGAAGCAAATTAGCACAAACTGATCGTGCTGCAAAGATATCT
GCGATAAAAAACAAGTTGAAGTCTCTGGAGAATGATGGCTGTAGCACAAAAAGACCAAGACTTAACCCAGATGACTTGAA
AAGCACTGGAGAACAATCTGATAAGAAGCTTTGA----------------------------------------------
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>chr1D_1_TraesCS1D01G192700
ATTATTTTAAAAATAAAAATAAAAAGGAAATGAATGAGAAAATAAAAGAAACCCGAAAAAAATAGTCGAATAAGGGCATG
TACAATGGTTCTATCTTAGGCACGCCACGTAGGATAAATGATGAGGTGGAGGAGAGAGAAATCATAAGAAAAGGAAGACA
AGAGATGATCTCTTAGCACAATATGTCTCACCACGTTTTTAGGAATAGCTAGTTATTAAAGATAAGGCTAAGAGATGACC
CATTGTAGACATATTTTTTTGTCATCTCTAAATCACATGCAAGACTTAAAATAAGACTATCTTATCAACCATTGTACATG
CTCTAGAGAAACACTGAGAACCACAGCACGAAAACATGAACCAGAAGGG-AAAAAACGACGAAAAACCGATTGAGCCCGC
CCGCTCCTGGGCCGGCCAACGTCGGTGGCGAGCAGTGGCATAGCATTTGCGGCTTGGCCCAGCTACAAAATGACCCAAAT
CCGATCATTCCCCGTTTGCTGTACAGTTGTTCTGCTCCGTTCTGGAAAAG-AAAAAACTGTTCCGGTCCGCCGCCGCCGC
CCCGCCCGCCCGCCCGCCCCGTGCTTCATCGGCTCATCGCTGCCCGAATTCTTCGGCGGAGCAACGCGATCCCTGCACGC
TCTCATCGCTCCCGCGCTGCCGGTAAGCTCTTCCGGCTTGCCCT----GCCTCCCGCCCA--TCTCTGTCGCCAGT----
--------------TCTGTCCAGATAGATCTAGACCTCACGCGGGCACTCTTCGCGTACGCTCTGATGTTGGTAGTTCGA
TGTTAGCAATCGCGACCAGCGAATCCTGTAGGCGATACCGATATCTGGGTGCATGTCTGATGTTTGCGGTAC-----TGT
AGAGAATCTGTTCTAAGAGTAC---------ATACCGCTGTGGTAAATTGGCCGAATTCGTGC---ATCTGATTGGTTGT
CCTCTCTGCTCTCTGCAGCAGAAGATCCATTTTCTGAAATTGGCGCTGAGTCGTGCACACAACGATTTCTTCTTCAAGTG
GCAATGGTAAGTGAGTCTTGGTTAGAAAGGGGCGACAGATGATTGTGCAGCATGCCTAGATGCTGTGTTTGTAACCAGCT
TAGTTTGCAGGATCCCAAGGGTCTTGACAGCGATAAGTCGGCGAGTAGGCTCTATGTGGGCAATCTGGATTTTAGGATAT
CAGAGTGAGTTTT-CTCTAGCCCGTCTCCCTTCCAAGGTCGGCCTGGTGTTATGTGTAATCCAATATTATAGTGTGATTC
TCCAGGTCTGACGTTATCAAGATGTTCTCCCCCTATGGAAAGATCATAGCTGAGGATTTCCTGTTGCATACGCGTGGCCC
GAAGCGAGGCGAGCCTCGTGGTTATGCCTTTGTTCAGTACACTACCAAAGAGGTACGAGTGATACTCATTACTTCTTGCA
AATGTTGATGGGTCCTGGTAATTCTCACCTTTGCCACCTGAAGTGAGCATGCAGGAAGCTCAGTTGGCAAAGGAGAAGAT
GAATGGCAAGTTGGTCTGTGGACGTCCTGTGGTGGTTCACCTAGCGAGCGAGAAGTGTTTCCTAGATTCCGGTAATTCAC
AAAGAGCACTGAAAGACAAGAAACTGGCAGGTGGTTCGGGAAGCAAATTAGCACAAACTGATCGTGCTGCAAAGATATCT
GCGATAAAAAACAAGTTGAAGTCTCTGGAGAATGATGGCTGTAGCACAAAAAGACCAAGACTTAACCCAGATGACTTGAA
AAGCACTGGAGAACAATCTGATAAGAAGCTTTGAAGTGAGCTTAGTCAGCGCA-TGGGAACAGTGCCCTATTATGCTGGT
TGCATGGTTGATGGTGTTGCAGTTGTAATACTCTAGCTTTATTAAGGTAGACAAACTAAAGGTGTAACATTACACAGTTC
ACCGGATTTGTACAACTGTTTGCACTAATCACCATTGTCCAAGTAACAATTAAGTCTTAATGGAGAAACCATTTTCCAAT
CTAGTTATCCAGTTAATGCTGGTCTATGCAGCTGATCTTCAGCCCACCCCATATACTTGCCCAACTGAATTGCGTCACAG
TTGGTTTATTCAGCTCTTCTGAAATTGGAAGGTCACTTGCGTCTGAAATCATGTGATGTAAAAGATCATTTTATGTTATT
ACATCCTGGAGTTGAATAGGATGCGACCACTTTGGATG-TTTTTTATGTTGTCACCAACCATACATGGCAATTTTGTTTT
TCA--CTTTGTGCAAACCGATTCTGGTGGTAAGAAATGTGGTGCCGTCACTGCTTTGTAAGATTGGAACC-TCTTAGTCA
AGGGGATTTTCTCCAAATG-----GGCATGTATCAGTACCAGTGCAGTGCTTACATTTATACACTAGA--------AAGT
AGAACAGCATATACATTATACAGCAAGGATTGAATAACCATTTCGTTTTAATAAGCCA--TGTTGCTGTGATATCTCT--
-GAATTTACTTAGATTTAAGAAACTCTAGAAAAGTTTCACAATTGCTCAACGTTCTGTTACATGTGATCTCTGTCAGCAT
TGTAAGTATCAGGCTTTTACCTCATCTGTTGTTTCAACTAGAGTATCTACATGATTATTCCAGTATATTTGGGGAGTAGC
ATCTGATGAAATCTCATCTGTGCCTATTTCGACTTCAGTGT-TATTTATCTGTCTTACAATCTTGGAGGTGCACTTAGTT
GGAAACATGCAGGTAACATTTACTTTTCTTTCTTTATGTTGCTATTTGAGTTAGTTTGCTGCCTGGACATCATGCCAGCT
CTAGCATCCATGCATATG
>chr1A_343
ACCGCAGGAAAGCTG-----------------------------------------------------------------
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-------------------------------------AGACCAGAAGGG-AAAAAACGACGGAAAACCGGCTTAGCCCGC
CCGCTGCGGGGCCGGCCCACGTCGGGGGCGAGCAGCG-----GCATTTGCGGGTTGGCCCAGCTACAG-ATGACCCAAAC
CCGATCACTCCCCGTTTGCTGTACAGTTGTTCTGCTCCGTTCTGGAAAAG-AAAAAACTGTTCCGGTCCGCCGCCGCCGC
CCCGCCCGCCCGCCCGCCCCGTGCTTCATCGGCTCATCGCTGCGCGAATTCTTCGCCGGAGCAACGCGGTCCCTGCACGC
TCTCATCGCCCCCGCGCTGCCGGTAAGCTCTTCCGGCTTGCCCGCCCGGCCTCCCGCCTA--TCTCGGTCCCCAGTTCTC
GCGC--------TCTCTGTCCAGATAGATCTAGACCTCACGCGGGCACTCTTCGCGCACGCTCTGATGTTGGTAGTTCGA
TGTTAGTAATCGCGACCAGCGAATCCTGTAGGCGATACCTATATCTGGGTGCATGTCTGATGTTTGCGGTAC-----TGT
AGAGAATCTGTTCTAAGAGTAC---------ATACCGCTCTGGTAAATTGACCGAATTCGCGC---ATCTGATTGGATGT
CCTCTTTGCTCTCTGCAGCCGAAGATCCATTTTCTGAAATTGGCGCTGAATCGTGTACACAACGATTTCTTCTTCAAGTG
GCAATGGTAAGTGAGTCTTGATTAGAAAGGGGCTACAGGTGATTGTGCAGCATGTCTACAGGTTGTGTTT--AACCAACT
TATTTTGCAGGATCCCAAGGGTCTTGACAGCGATAAGTCGGCGAGTAGGCTCTATGTGGGCAATCTGGATTTCAGGATAT
CAGAGTGAGTTTTTCTCTAGCGCATCTTCCTTCCAAGGTCGGCCTGGTGTTATGTGTAATCCAACATTATAGTGTGATTC
TCCAGGTCTGACGTTATCAAGATGTTTTCCCCCTATGGAAAGATCATAGCTGAGGATTTCCTGTTGCATACGCGTGGCCC
GAAGCGAGGCGAGCCTCGTGGTTATGCCTTTGTTCAGTACACTACCAAAGAGGTACGAGTAATATTCATTACTTGTTGCA
AACATTGATGGGTCCTGGTAATTCTCACCTTTGCCACCTGAAGTGAGCATGCAGGAAGCTCAGTTGGCAAAGGAGAAGAT
GAATGGCAAGTTGGTCTGTGGACGTCCTGTGGTGGTTCACCTGGCGAGCGAGAAGTGCTTCCTAGATTCCGGTAATTCAC
AAAGAGCGCTGAAAGATAAGAAACTGGCAGGTGGTTCAGGAAGCAAATCAGCACAAACTGATCGTGCTGCAAAGATATCT
GCGATAAAAAACAAGTTGAAGTCTCTGGAGAATGATGGCTGTAGCACAAAGAGACCAAGACTTAACCCAGATGACTTGAA
AAGCACTGGAGAACAATCTGATAAGAAGCTTTGAAGTGAACTTAGTCAGCGCA-TGTGAACAGTGCCCTATTATGTTG--
---------------GTTGCAGTTGTAATACTCTAGCTTTATTAAGTTAGACAGACTAAAGGTGTAACATTTCACAGTTC
ACTGGATTTGTACAACAGTTTGCACTAATCACCATTG-CCAAGTAACAGTTAAGTCTTAATGGAGAAACCATTTTCCAAT
CTAGTTATCTAGCTAATGCTGGTCTATGCAGCTGATCTTCAGCCCACCCCATATACTTGCCCAACTGAATCGTGTCACAG
TTGGTTTATTCAGCTCTTCTGAAATTGGAAGGTCACTTGCCTCTGAAATCATGTGGCGTAAAAGATCATTTTATGTTGTT
ACATCCTGGAGTTGAATAGGATGC----ATTTTGGATGTTTTTTTATGTTGTCACCAACCATACATGGCAATTTTGTTTT
TCA--CTTTGTGCAAACTGATTCTGGTGGTAAGAAATGTGGTGCTGTCACTGCTTTGTAAGATTGGAACCCTCTTAGTCA
AGGGGATTTTCTCCAAATG-----GGCATGTATCAGTACCAGTGCAGTGCTTACATTTATACACTAGA--------AAGT
AGAACAGTATATACATTATACAGCAAGGATTGAATAACCATTTCGTTTTAATAAGCCA--TTTTGCTGTGATATCTCT--
-GAATTTACTTAGATTTAAGAAACTCTAGAAAAATTTCATAATTGCTCAACGATCTGTTATATGTGATCTCTGTCAGCAT
TGTAAGCATCAGGCTTTTAC-TCATCTGTTGTCTCAACTAGAATATCTACATGGTTATTCCAGTATATTTGGGGAGTAGC
ATCTGATGAAATCTCATCTATGCCTATTTCGACTTCAGTGC-TATTTATCCGTCTTACAATCTTGGAAGTGCACTTAGTT
GGAAACATGCAAGTAACATTTACTTTTATTTATTTATGTTGCTATTTGAGTTAGTTTGCTGCCTGGACATCGTGCCAGCT
CTAGCATCCATGTATATG
>chr1B_351
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------------------------------AAAACACAGACCAGAAGGAAAAAAAATGACGGAAAACCGGCTGAGCCCTG
CCGCTGCTGGGCCGGCCCACGTCGCGGGCGAGCAGCG-----GCATTTGCGGCTTGGCCCAGCTACAG-ATGACCCAAAT
CCGATCATTCCCCGTG-GCTGTACAGTTGTTCTGCTCCGTTCTGAAAAGAAAAAAAACTGCTCCGGTCCGCCGCCGCCCT
CCCGCCCCCGTGCT-------------------TCATCGCTGCCCGAATTATTCGCCGGAGCAACGCGATTCCTGCACGC
CCTTATTGCTCCCGCTCTTCCGGTAAGCTCTTCCGGCTTGTCCT----GCCTCCCGCCTATTTCTCTGTCCCCAGTTCTC
GCGCAGTCGCGCTCTCTGTGCAGATAGATCTAGACCTCACGCGGACACGCTTCGCGTACGCTCTGATGTTACTAGTTCGA
TGTTAGCTACTGCGGCCTGCGAATCCTTTAGGTGGTACCGATATCTGGGCGCATGTATGATGGTTGTGGTATTCTTTTGT
AGAGAATCTGTTTTAACTTTTAAGAGCACATATATTGCTCTGGTAAATTGACCGAATTCGCGCCGCATCTGATTGAATGT
CCTCTCTGCTCTCTGCAGCAGAAGATCCGTTTTCTGAAATTGGCGCTGAATCGTGTACACAACGATTTCTTCTTCAAGTG
GCAATGGTAAGTGAGTCTTGATTAGAAAG-GGCTACAGGTGATTGTGCAGCATGGCTAGATGTTGTGTTT--AACCAACT
TATTTTGCAGGATCCCAAGGGTCTTGACAGCGATAAGTCTGCGAGTAGGCTCTATGTGGGCAATCTGGATTTTAGGATAT
CAGAGTGAGTTTTTCTCTAGTGCATCTTCCTTCCAAGGTTGGCCTGATGTTATGTGTAATCCAACATTATAGTGTGATTC
TCCAGGTCTGACGTTATCAAGATGTTCTCCCCCTATGGAAAGATCATAGCCGAGGATTTCCTGTTGCATACACGTGGCCC
GAAGCGAGGCGAGCCTCGTGGTTATGCCTTTGTTCAGTACACTACCAAAGAGGTACGAGTAATATTCATTACTTGTTGCA
AACATTGATGGGTCCTGGTAATTCTCACCTTTGCCACCTGAAGTGAGCATGCAGGAAGCTCAGTTGGCAAAGGAAAAGAT
GAATGGCAAGTTGGTCTGTGGACGTCCTGTGGTGGTTCACCTAGCGAGTGAGAAGTGTTTCCTAGATTCTGGTAATTCAC
AAAGAGCGCTGAAAGACAAGAAACTGGCAGGTGGTTCGGGAAGCAAATCAGCACAAACTGATCGTGCTGCAAAGATATCT
GCGATAAAAAACAAGTTGAAGTCTCTGGAGAATGATGGCTGTAGCACAAAAAGACCAAGACTTAACCCTGATGACTTGAA
AAGCACCGGAGAACAATCTGATAGGAAGCTTTGAAGTGAACTTAGTCAGCTCATTGTGAACAATGCCCTATCATGCTGGT
TGCATAGCTGATGTTTCTGCAGTTGTAATACTCTAGCTTTATCAAGTTAGACAAACTAAAGGTGTAACATGACACAGTTC
ACCGGATTTGTACAACAGTTTGCACCAATGACCATTGTCCAAGTAACAATTAAGTCTTCATGGAGAAACCATTTTCCAAT
CCAGTTCTC------ATGCTGGTCTATG-AGCTGATCTTCTGCCCAACCCATATATTTGCCCAACTGAATTGCGTCACAG
TTGGTTTATTCAGCTCTTTTGAAATTGGAAGCTCACTTACCTCTGAAATCATGCGACGTAAAAGATCATTTTATGTTGTT
ACGTTCTGGAGTTGAATAGGATACAACCATTTTGGATG-TTTTTTATGTTGTCACCAACCATACATGGCAATTTTTTTGT
TGTTGCTTTGTGCAAACCGATACTGGTGGTAAGAAATGTGGTGCTGTCACTGCTTTGTAAGATTGGAACCCTCTTAGTCA
TGGAGATTTACTTTTAGCCAAATTGGCATGTATCAGTACCAGTGCAATGCTTACTTTTATACACTATACTACCTGGAAGT
AGAACAACA-------TATACAACAAGGATTGAATAACCATTTTGTTTCAATAAGCCCCCTGTTGCTGGGATATGCGACA
AGAATTTACTTGGGACTTTTAAAACTCTAAAAAGTTTTGTAGTTGCTCAGCGATCTGTTACATGTGATTTCTGTCAGCAT
TGCAATATCATGCTTCTACC-TCATCTGTTGTTTCAACTAGAATATCTACATGGTTATTCCGG--TATTTGGGGTGTAGC
ATCTGATGATATCTCATCTGTAGTGGTATCGATTTCAATGAATATTTATCTGTCCTAGAATCTCGGAAGTGCACTTAGTT
GGAAACATACAGGAAACATTTACTTTCCTTTACTTATGTT----------------------------------------
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>SNPs
-SSSSSSS---SS-SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSS------SSS----------------------S-------SS---------
-----S-----------S-------S---------S-SSSSS-------------------------SS-----------
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-------------------------------------------------------S------------------------
----------------------------------------------------------S-----------S---------
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---------------------------------------S----------S---------S---------------S---
-------------------------------------------------S-----S------------------------
--------------------S------------S----S---------------S-------S-------SS-----S--
--S-----------------------------------------------------------------------------
---------------------S-S---S------------------------------------S---------------
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------------------------------------------------------------S---S---------S-----
--SS----------------------------------------------------------------------------
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-------S----------------------------------------S-------------------------------
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---------------------------------------S----------------S-----------------------
-----S-S-----S--------------------------------S---------------------------------
----------------S---------------------------------------------------------------
---------S--S-------------------------------------------------------------------
----------------------------------------S---------------S--------------------S--
------------------------S----S--------------------------------------------------
--------------------------------------------S-----------------------------------
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---------------------------------------S------------S---------------------------
------S-------------S---------------------S----------S--------------------------
----------------------------------------S--------------------------S------------
-------------------------------S---------------------------------------S--------
------------S-----
>forward_110
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----------CTATCTTAGGCACGCCACGT--------------------------------------------------
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>reverse_1123
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--GTTTGCAGGATCCCAAGGGT----------------------------------------------------------
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>forward_118
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------------------GGCACGCCACGTAGGATAAA------------------------------------------
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>reverse_1846
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-----GGTTGATGGTGTTGCAGTTGT------------------------------------------------------
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