>input_sequence_69853
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---------------------------------------------------------------ACACAAAGACCACCTAA
TCTCTCTCTG--ATCTGGAAGCAGAGGCAGCGCCGGAAGCAGCAGC------AGCTAGCGACACACAACAACTACAGCAA
GCACACAGC---AGGAGGAAGAAGAAGGCTCTGCAGTTCTACACTTCTAC-TTCTACACGTATGGGCAACTGCGCCATCA
CGCATCAGGCCACGTCGTGGGCGGACGACGGCGAGTGGGAGCTGCCGTCGCCCGGCAACGACGACGAGGGGCGCGCGGAG
CAGAGGAAGGAGCACGTCAGCGAGGTAACCATCCGTATCAGCAAGCGGCAGCTGCAGGAGCTGGTGGACAAGAGGGCCGC
CGACGACGGGCACGGTCACATCTGGAAGAGCGGGCGGTCGGCGTCGGAGCTTCTGGTCGACATCATGAACGCCGGGGAGG
TCCACCACCACGTCGAGCACTGCAGGGCGGCGCACTGGAAGCCCGCCCTGCAGAGCATCCCGGAGGCGGTGGAGTCGTGA
CGCTACGCCCAGTGACGCGTCCCGGCCATGGCTTTCG----CCGGGCTTGGGTTTCTCCTCTCTTTCTTGGTTGCTTCTT
CGCCGTGTCTTTTGTTAGA-----ACACAGCTTTTACGCGGCCTTTCTGTGTC---ATTCTTTGGTTTGGATCCAACGAA
CAATGTATATTG--------------------------------------------------------------------
-------------GTAGGGAAAGTGGTGATACACACCACGGTGATGTAAATTGTAAAGTAGATCGATGTTCTTCTGTCCA
TACGGCTTTTTGTGTGTGGAACAA------ACCAAGCATTCTCAG-----------------------------------
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>chr3B_1_TraesCS3B01G356400
AGCCCTATGGCAACTGCAGTGTAAACATCGTGGCAACTTCTGGTAAAAAAAATCGTCGAAACATATCAACATGGGGTCTA
GTTTTGAAGATCTCGTCGAGACGGATTTAATGGTGAAAACGGATTTTTAGTTCGCTTTTTTGTTTAGGAGATACAACATT
TTTAAGCCGAAAACCAAAAAAAATTCTACTGATGTCATCTATTCATACGTGGCAAAATGAGTCGTGATGGAGGCATGTGA
GCGATGTGCAAACATCCACACGTGTGGGCGTTAACATTTCCATTAATTATATAACTCCTCGCAAAATAATACAGTAATAA
TTAATTAACAACTTGAACGTGGCTCCTGTAAATAAATCCATG--TAGTGATCGTGCGAGATAGCGTCAACTGCGAAACGA
TGTGAGGCCGCCGACAGGCATGTGTCACCGCGATGCATGCAACCTGCACGCGACCAACGTGATGGCCGCTCAACAAGAGG
AGGAACCGCGACAGCCGCCAACAGGATGCGTCCAAAGCCGCGGAATTTGCAGCTCACCGCCCACAAGCATTGGCGGCTTG
GCGCTGTCAGCTGTCCGACACGAATAAACAAAGCGCACAGTGAGGCGCCGAAGGCACCCAGTTTGCGGCCAGGCGTGCAC
CGACGAGGCGCCGGACGCACAGCACGCGGCCACGACACCGCGACTTCATCGACCACGACGGCTC---CCAACCGCCGCGG
CTAAGCAATGCCATGCCAGCCACCGGGACGGTGAGCTGCAGGAGAATCCGCT-----GAAAAAGCCGCGTTCCCACTGCG
AGCGC-----------CCATCGCAGATCCCGCGCTCCCCCGCGTTCCCACTCGTCCCACCCACTCGCAACCATCCGCCAC
GGCGCCCACGTAGGATTCGAT--CCCCACGTCAGTGTCCAGCGCGGCCGAAACGTCGGCTGCGGCTTTTCCCAGGACGGT
ACTGCCACCCCCGTTCGCTCCAAGCCCCCGACTATATATCCGCGCCTCTCAGACCAGCTGGTCACACAAAGACCACCTAA
TCTCTCTCTG--ATCTGGAAGCAGAGGCAGCGCCGGAAGCAGCAGC------AGCTAGCGACACACAACAACTACAGCAA
GCACACAGC---AGGAGGAAGAAGAAGGCTCTGCAGTTCTACACTTCTAC-TTCTACACGTATGGGCAACTGCGCCATCA
CGCATCAGGCCACGTCGTGGGCGGACGACGGCGAGTGGGAGCTGCCGTCGCCCGGCAACGACGACGAGGGGCGCGCGGAG
CAGAGGAAGGAGCACGTCAGCGAGGTAACCATCCGTATCAGCAAGCGGCAGCTGCAGGAGCTGGTGGACAAGAGGGCCGC
CGACGACGGGCACGGTCACATCTGGAAGAGCGGGCGGTCGGCGTCGGAGCTTCTGGTCGACATCATGAACGCCGGGGAGG
TCCACCACCACGTCGAGCACTGCAGGGCGGCGCACTGGAAGCCCGCCCTGCAGAGCATCCCGGAGGCGGTGGAGTCGTGA
CGCTACGCCCAGTGACGCGTCCCGGCCATGGCTTTCG----CCGGGCTTGGGTTTCTCCTCTCTTTCTTGGTTGCTTCTT
CGCCGTGTCTTTTGTTAGA-----ACACAGCTTTTACGCGGCCTTTCTGTGTC---ATTCTTTGGTTTGGATCCAACGAA
CAATGTATATTG--------------------------------------------------------------------
-------------GTAGGGAAAGTGGTGATACACACCACGGTGATGTAAATTGTAAAGTAGATCGATGTTCTTCTGTCCA
TACGGCTTTTTGTGTGTGGAACAA------ACCAAGCATTCTCAGTTGATCTGCTGTTTTGTGTGTGTGTGTGGAACAAA
GCAAGCA-TTTTCACTTGATCCGCTGTCCAAAAACACAGTACAGACGAGCTTACCAGGAAGAGGAGGAAGAAGAAACCTG
CAAGGGACCAT--------------------------AGCCAAACTTGGAAACAGATCAGA----------------ACA
GAAGCGATTCCATATGCCCAGCAAGGGCTGCA-------------------------AAGCCAAGTTATGTTCCACTAAA
AAAAA----------------CCAAGTTATGCAATGTGATTATGA------ATCATTGGGTATGATCTTTTTTNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNGGTACCAACGAAGATTGCACAC
ATACATTTTCTTTCGCCCACGTTCAGAAGCCCTTGCATTAAAAATGGGCATTCTTGGTTCGTTTCGCCTGCCGCGAGAGG
CATGAATGACCTTATTCGCTATTGTTTTAGGATTTTAAACGATTTAAGAAATCACCTCACCTAACAATATTACAAAA---
----TATTACGTGTTAGAAATACTAGTAGAGTGGACTTCTCGACTTCTGACTTCCTTTTGTGTAGTATTTAATCAGGCCA
CACAATCAAGGAAGTTACAACAAAGGAAAACACAAAAATGATACTGAGCAGATTTGGATTAGGGTGGCCAAGTGCTACTA
AGGGGGTGTTTGTTTTCCGTGACTTTTTTGTGTAGGGACTAGAAAAAGTTTCTTTTAGAGACTTTTTTACCAAATGGGAG
GGACTTTTTAGGGACTAAACTAGGTATTTGGGACTAAATGAAGAAGACTCTCAGGAAGAGTCTTTTTTTAAAAAAATTGG
GACTTTTTCAACAATGCCCCTC
>chr3D_349
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----------------------------TAAATAAATCCATGTATAGTGATTGTGCAAGATAGCGTCAACCGCAAAACGA
TGTGAGGCCGCCGACGGGCATGTGTCACCGCGATGCATGCAACCTGCACGCGACCAACGTGACGGCCGCTCAACAAGAGG
AGGAACCGCGACAGCCGCCAACAGGGTGCGTCCAAAACCGCGGAATTTGCAGCTCACCGCCCACAAGCATTGGCGGCTTG
GCGCTGTCATCTGTCCGACACGAATATACAAAGCGCACAGCGACGCGCCGAAGGCGCCGAGCCTGCGGCCAGGCGTGCAC
CGACGAGGCGCCGGGCGCACAGCACGCGGCCACGACACCGCGACCTCATCGACCACGACGCCTCCCTCCAACCGCCGCGG
CTAAGCAATGCCA-----GCCACCGGGGCGGTGAGCTGCAGGGGAAAGAATCCGCTGGAAAAAGCCGCGTTCCCACCGCG
AGCGC-----------CCATGCGAGATCCCGCGCCCCCCCGCGTTCCCACTCGTCCCACCCACTCGTAACCATCCGCCAC
GGCGCCCACGTAGGATTCGATCCCCCCACGTCAGTGTCCAGCGCGGCCGATACGTCGGCTGCGGCTTTTGCCCGGACGGT
ACTGCCACCCCCGTTCGCTCCAAGCCTCCGACTATATATCCGCACCTCTCAGACCAGCTGGTCACACAAAGACCACCTAA
TCTCTCTCTCTAATCCGAAACCAGAGGCAGCGCCGGAAGCAGCAGCGGCAGTAGCTAGCGACACACAACAACTACAGCAA
GCACACG---GGAGGAGGAAGAAGAAGGCTCTGCAGTTCTACACTTCTAC-TTCTGCACGCATGGGGAACTGCGCCATCA
CGCACCAGGCCACCTCGTGGGCGGACGACGGCGAGTGGGAGCTGCCGTCGCCCGGCGACGAGGACGAGGGGCAAGCGGAG
CAGAGGAAGGAGCACGTCAGCGAGGTGACCATCAGGATCAGCAAGCGGCAGCTGCAGGAGCTGGTGGACAAGAGGGCCGA
CGACGGCG------------TCTGGAAGGGCCGGCGGTCGGCGTCGGAGCTTCTGACGGACATCATGAACGCCGGGGAGG
TGCACCACCACGTCGACCACTGCAGGGCGGCGCACTGGAAGCCCGCTCTGCAGAGCATCCCGGAGGCGGTGGAGTCGTGA
CGCTACGCCCAGTGACGCGTCCCGGCCATGGCTTTCGATCGCCGGGTTTGGGCTTCTCGTCTCCTTCTTGGTTGCTTCTT
CGCCGTGTCGACCTTTGGTAGAACACACAGCTTTTATGCGGCCTTTTTGTGTTATTATTCTTTGGTTTGGATCCAACGAA
CAATGTATATA---------------------------------------------------------------------
-------------GTAGGGAAAGT---------------GGTGATGTAAATTGTAAAGTAGATCAATGTTCTTCTGTCCA
TACGGCTTTTTGTGTGTGGAACAA------ACCAAGCATTCTCAGTCGATCTGCTGCTTTGTGCGCG------GAACAAA
CCAAGCATTTTTCACTTGATCTGCTGTCCAGAAACACGGTACAGACGAGCTTACCAGGAAGAGGAGGAAGAAGAAACCTA
CAAGGGACCAT--------------------------GGCCAAACTTGGAAACAGATGAGA----------------A--
--------------TGCCCTGCAGGGCTGCAAAGCAATGTTGGTTGGTTGAACCCAGAAGCCAGGTTATGTTCCACTCAA
AAAAAGAAAAGAAAAAAGAATCCAGGTTATGCAATGTAATTATGA------ATCATTGGGTGTGATCTGCCCAGTAAAGT
CGTGGGTACCAT--------------------------------------------------------------------
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------------------------------------------------------------TACCAATGAAGATTGCACAC
ATGCATTTTCTTTCCTCCACGTTCATAAGCCCGTGCATTAAAAATGGGCAGTCTTGGTTCG-TTCGCCTGCCGCGAGATG
CATGAAAGACCTGATTCGCTATTATACTAGGATTTTACGATTTATTAGAAATCACCTCACCTAATAATATTACAAAAATA
CTACTACTATGTATTAGAAATACTGGTAGAGTGGACTTCTCGACATCTGACTTCCTTTTGTGTAGTATTTAATCAGGCTA
CACAATCAAGGAGGTTACAACAATAAAAAATACAAAAATGATA--GAGCAGATTTGGATTAGGGGGGCCAAGTGCTATTA
A-------------------------------------------------------------------------------
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>chr3A_349
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----------------------------TAAGTAAATCCTTGTATAGTGATTGTGCAAGATAGCGTCAACCGCAAAACGA
TGTGAGGCCGCCGACGGGCATGTGTCACCGCGATGCATGCGACCTGCACGCGACCAACGTGATGGCCGCTCAACAAGAGG
AGGAACCGCGACAGCCGCCAACAGGGTGCGTCCAAAACCGCGGAATTTGCAGCTCACCGCCCACAAGCATTGGCGGCTAG
GCGCTGTCATCTGTCCGACACGAATAAACAAAGCGCACAGCGACGCGCCGAAGGCACCCAGTTTGCGGCCAGGCGTGCAC
TGACGAGGCGCCGGACGCACCGCACGCGGCCACGACGCC-----------------------TC---CCAACCGCCGCGG
CTAAGCAATGCCACGCCAGCCACCGGGGCGGTGAGCTGCAGGAGAATCCGCT-----GAAAAAGCCGCGTTCCCACGGCG
ACCGTCCGGGCCCCGTCCATGCGAGATCCCGCGCTCCCCCGCGTTCCCACTCGTCCCACCCACTCGCAACCATCCGGCAC
GGCGCCCACGTAGGATCCCAT--CCCCACGTCACCGTCCAGCGCGGCCGAAGCGTCGGCTGTGGCTTTTGCCCGGACGGT
ACTGCCACCCCCGTTCGCTCCAAGCCTCCCACTATATATCCGCGCCTCTCAGACCAGCTGGTCACACAAAGACCACCTAA
TCTCTCTCTCTAATCCGA---------------CGGAAGCAGCAGC------AGCTAGCGACACACAACAACTACAGCAA
GCACACAGCAGGAGGAGGAAGAAGAAGGCTCCATCTATCTATACTCTATAGTTCCACACGCATGGGGAACTGCGCCATCA
CGCACCAGGCCACGTCGTGGGCGGACGACGGCGAGTGGGAGCTGCCGTCGCCGGG---CGACGACGAGGCGCACGAGGAG
CGGAGGAAGGAGCACGCCAGCGAGGTGACCATCCGGATCAGCAAGCGCCAGCTGCAGGAGCTGGTGGACAAGAGGGCCGA
CGACGGCG------------TCTGGAAGGGCCGGCGGTCGGCGTCGGAGCTTCTGGCGGACATCATGAACGCCGGGGAGG
TGCACCACCACGTCGACCACTGCAGGGCGGCGCACTGGAAGCCCGCCCTCCAGAGCATCCCGGAGGCGGTGGAGTCGTGA
CGCTACGCCCCGTGACGCGTGCCGGCCATGGCTTTCGATCGCCGGGTTTGGGTTTCTCGCCTCTTTCTTGGTTGCTTCTT
CGCCGTGTCT---------------CACAGCTTTTTGGCGGCCTTTTTGTGC---TATTCTTTGGTTTGGATCCAACGAA
CAATGTATATACTCTCCGTTCCAAAATAGATGACCCAACTTTATACTAAGGTCAGTACAAAGTTGGGTCATCTATTTTGG
AACGGAGGGAGTAGTAGGGAAAGT---------------GGTGATGTAAATTGTAAAGTAGAT----GTTCTACTGTCCA
TACGGCTTTTTGTGTGTGGAACAACAACAAACCAAACATTCTCAGTTGATCTGCTGCTTTGTGTGTG------GCACAAA
CCAAGCA-TTTTCACTTGATCCGCTGTCCAAAAACACGGTACAGACGAGCTTACCAGGAAGAGGAGGAAGAAGAAACCTA
CAAGGGTGCAAAGCAATGTTGGTTGGTTGAACCCAGAAGCCAAACCTGGAAACTGATGAGGACAGAAGCGATTCTGTA--
--------------TGCCCTGCAAGGGTGCAAAGCAATGTTGGTTGGTTGATCCCAGAAGCCAAGTTATGTTCCACTAAA
GAAA------------------CAAGTTATGCAATGTAATTATGATTATGAATCATTGGGTGTGATCTGCCCTGTAGAGT
CGTGGGTACCAATGAA----------------------------------------------------------------
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-------------------------------------------------------------------GAAGATTGCACAT
ATGCATTTTCTTTCCTCCACGTTCAGAAGCCCGTGCATTAAAATT-GGCATTCTTGGTTCG-TCCGCCTGCCGCGAGAGG
CATGAAAGACCTGATTCGCTATTATATTAGGATTTTACGATTTATTAGAAATCACCTCACCTAATAATATTACAAAAATA
CTA-TACTATGTATTAGAAATACTGGTAGAGTGGACTTCTCGACTTCTGACTTCCTTTTGTGTAGTATTTAACCAGGCTA
CACAATCAATGAGGTTACAACAATCGAAAAAACAAAAATGATA--GAGCAGATATGGATTAGGGGGGCCAAGTGCTATTA
A-------------------------------------------------------------------------------
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----------------------
>SNPs
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSS-----------------------S----S-------------S--S------
---------------S----------------------------------------------------------------
-------------------------S----------S-------------------------------------------
---------S------------------------------S--S------------------------------------
--------------------------------------------S---------------S-------------------
-------------S-------------S------------------------------------------------S---
--------------------SSS---------------------------------------------------------
---------------------------------------------------------------------S--S-------
--------------------------S-----------------------------------------------------
---------S-----S-S--S-----------------------------------------------------------
------------------------------------------------------------S-----S-------------
----S---------------------------------------------------S---------------S-------
--------------------------S--------S-------------------------------------------S
-----S--SSSSSSSSSSSS--------S--S------------------------SS----------------------
-S--------------S---------------------------------------------------------------
----------------------------------------------S-----------S---------------------
----------SSSS--S-S-----------------S---------S-----S---------------------------
----------SS--------------------------------------------------------------------
------------------------SSSSSSSSSSSSSSS-------------------------S---------------
--------------------------------------------------------S----------SSSSSS-------
S------------------------------------S-----------------------------------------S
---------------------------------------------------------S--------------------SS
SSSSSSSSSSSSSS-----S-------SSSS-------------------------------------------------
-------------------------------------S-----------------------S------SSSS-SSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS------S-------------
--S-----------SS----------------S----------------------------S------------------
------S-----S----------S-S-----------SSSSS-S-S------------------S---------------
------S--S--S-----------S-----------------------------------------------------S-
------------S----------SS-----S------------SS-------------------S------------S--
-SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSS
>forward_239
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-----------------------------------------------------------AGTCGTGATGGAGGCATGTG-
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>reverse_1370
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---------GCACGGTCACATCTGGAAGA---------------------------------------------------
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>forward_240
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------------------------------------------------------------GTCGTGATGGAGGCATGTGA
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>reverse_1372
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-----------ACGGTCACATCTGGAAGAGC-------------------------------------------------
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>forward_241
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-------------------------------------------------------------TCGTGATGGAGGCATGTGA
G-------------------------------------------------------------------------------
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>reverse_1374
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-------------GGTCACATCTGGAAGAGCGG-----------------------------------------------
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>forward_347
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-------ACAACTTGAACGTGGCTCCT-----------------------------------------------------
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>reverse_2083
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--AGCGATTCCATATGCCCAGC----------------------------------------------------------
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----------------------
