>input_sequence_69851
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---------AATCCAGGAGCGCCGCCGAGCCCTCCTTCC-----TCCCGATCGTTTCTCCCCACCACCACCACCAGCCGC
AAAAAGAAAATGTGCGGAAAGGGCCAGAACAACGGGCTCGCGTCGCCGGCGGGGACAAGCAGCACGGCGACCGCCATCGT
CGTCCTCGCGTCGCTGCTCCTCGCGGCCTCGGTCGCCGCTTTCTTTCTGTCGCCGTCGCCGTCGCCGGCAGC---GGACG
AGAAGCCCCCTGAGCCTGTGGAGCTCGCCATCGGCGTCGCCGGGCACGAGGGCTGGCTGGACGCGCTCCGGGCGTGGGCG
AAGCTGGCGTGCCTCAAGCTCCGCCCGCTCGAGCCAAGGTACACATCGTGTTCTCTT----CTTTCTCCGTACACGGGTC
CAAGAACGCGTGTCCTCATCTCATGGCGTGTTGGTTACTTGTTTTTGCGTGGCGGCTGATGAAGGTGTGATCTGAGGAGC
TCGGGGTCGATGAAGAAGGCGGCCAGGCAGAGCCTGGCGATGGGCAAGGAGGCCGTGGAGCACACGGCGGTGTCGGCCGC
GAGGGCCGCCGAGGAGACCATCGGGAGGACCACCGAGAAGGTGAGGAGGAAGGTCTCG---GCGTCGCCGTCGC---CGT
CCGCGCCACGCGCCGATGGAGACCTGTGATCTGCATGCAGGTCGACGCAAGCGCCAAAATTTTGCGAGCTGTATCCCTCC
CTCCCACTTATGTAC----CTGTAGCTTTCTACTAGTTTGAGAAGAAAAGTTGGTGTACTCG------------------
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>chr2D_1_TraesCS2D01G166200
TGGCGACTTAAGGTCCAAAACCAGGGCGGGTGATAACCCAAAGACTCAAATATGAGCAAAATAACCCGAAGCCAGTATAA
CCCGGGGATTCATAATTTGCGTAAAAGTAAAAAATTGAAAACATAAAAACTCTGAAAAAACCAAAACAGAGAACATGCAA
ATCTCAAATATTTGTTAAGCCGGCTTTTAAGGCGCGACCGGAAAAAATTGGCTCACAGGCCTTATGTTTGCTTTCAAGGC
CGCATAGCCTAGCTCACATGCCTCATGTTTGCTTTCAGTGGCCTAGCCTCTTCACTCCACTCCCCTTCACTATCCAAGCT
CCCGTCTAGTCTTCTCCGGCATGGCAGGCAGTGGATCCGAATCCTTCACCTCTAGATCCCTCGACCCCGAGCTGATCCCA
CGCGGCCCCGAGGAGGAGATGGTCGTCCGGCTTGCGCTCCGCCGCTCCCGGGAGGAGGCCCGTGCGAGGCAGCGGGCGGA
CTCCTTGTGTCGGAAATCCATTATCTATTTGATGTCCACAAGCACCGTTCGGTTTTCGGGCTCCGACGAGGAAGAGTAGG
ACATGGGAGACGGCGT-TTGAGTCTCGTGAGCCGGCTCGTGTCCCATGCCTTACTCTACCTTGCCGGCGACCGGACCAAC
ACTCTAGGAAGCGCAGCCGGCCGCCGGACATGGACATGGCAAAACTGGGCGAGCTCTGCTTAAATTAAGTTTCACGTTTC
ATGTAATAATATGAATTTAAGATTTTTAATTTAAGGTGTCCGATTATAAAAAA---------------------------
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--------------AGGCTGATGTACTAACGTTTTGACATCTGACATGACATGGTACGGCCCGGTTCATTTGTTT-----
--ACCAAAGCAGCTGCGTGTAAGTGCCGCGACACGTGTCCCCGAAGTCGGCAACCTCGCTCGGCGACCTGTCCTCTCCAA
CCGCCGCACGTACGTGTTGCCTCACGTGTCCGCCCCAGCGATCAAAACTCCCACCCAACACCACCACGTACGGTCCGACC
GTCCGAGCCAATCCAGGAGCGCCGCCGAGCCCTCCTTCC-----TCCCGATCGTTTCTCCCCACCACCACCACCAGCCGC
AAAAAGAAAATGTGCGGAAAGGGCCAGAACAACGGGCTCGCGTCGCCGGCGGGGACAAGCAGCACGGCGACCGCCATCGT
CGTCCTCGCGTCGCTGCTCCTCGCGGCCTCGGTCGCCGCTTTCTTTCTGTCGCCGTCGCCGTCGCCGGCAGC---GGACG
AGAAGCCCCCTGAGCCTGTGGAGCTCGCCATCGGCGTCGCCGGGCACGAGGGCTGGCTGGACGCGCTCCGGGCGTGGGCG
AAGCTGGCGTGCCTCAAGCTCCGCCCGCTCGAGCCAAGGTACACATCGTGTTCTCTT----CTTTCTCCGTACACGGGTC
CAAGAACGCGTGTCCTCATCTCATGGCGTGTTGGTTACTTGTTTTTGCGTGGCGGCTGATGAAGGTGTGATCTGAGGAGC
TCGGGGTCGATGAAGAAGGCGGCCAGGCAGAGCCTGGCGATGGGCAAGGAGGCCGTGGAGCACACGGCGGTGTCGGCCGC
GAGGGCCGCCGAGGAGACCATCGGGAGGACCACCGAGAAGGTGAGGAGGAAGGTCTCG---GCGTCGCCGTCGC---CGT
CCGCGCCACGCGCCGATGGAGACCTGTGATCTGCATGCAGGTCGACGCAAGCGCCAAAATTTTGCGAGCTGTATCCCTCC
CTCCCACTTATGTAC----CTGTAGCTTTCTACTAGTTTGAGAAGAAAAGTTGGTGTACTCGTTGTAACGTGCTGTAACA
TGTGTATGCGTATCCTGCGATTCTGTCTTT-----------------------GAGACGTC-------------------
------------AAGGAAATGCATTTTGGTTGCAAATAGTTGCATTGACAGCGCTCTGAAGCCATGTC-----------A
GAGCCCAGGTGTTGATAAGTAACAGAAATAGCAGTTCCATCAATGG-----AAAACCCTCCTGCAGCACAATGGCATTTG
TTGCAG---CTCCTTGCAAAAGAGTTTTGACT---TAACAAATGGCAAGCAAATGGGTCAGCTGCCGGATACTCGACCCC
AATAGCATGATTGTCTCAC---CTAGAGTGGAGAGAGATTCTCCACTATGAAACTAGGAAACAGTCTTCTTCCTTCCGAA
GTAACATAACATCTGATCTCAAAAGCCTATGGTATGGACACAGGAGGGGTACACGGAATATACAGGGCAATGCAATCCAT
TTCATCCATGTCGGGGAGGACCGGCATCGCCGCGTCGCTC-ATTCCGGGCAGATTTCCCTGAAGATGGGCAGCCTGCGTC
GGCCGCTGCGCCCGTAGAGGGCCTCGGCTATCAGGTCTTCTTCCTCCTCTGTTGGCTGTGCTGCTGCAGACGTCGCCTGT
GCTGAAGGTGTCGTCGAACCAGGTTTCGGTGTCGACAGAAGGTCCGGCCTGTTTCCTAGGATGACGGCGCCATCTGGTGA
TCGGAAGTTGGAAAATGTCTGCTTGAGTTCCGGGAAACCTGGTGCGCCAGTGAGCCCGCCAGCCTATGCAACATGAACCC
ACACAAACGAGATGTTACTGCATATAGTACACTGTAGATTTTGATGGTAAAGGACTGTCAGTCTGTCACAAAGGGCAATA
TATTTGGATAGTCACCAAACTAGCTTAAGAGAATGATTCTACTAAACCAG---CTTATGGTTGTGTTGGTTTACAGGGAA
GCTGCATGAACGTGCTAACAATTTCAGCTAAAGGATGAAGAGAAGAATAGCAGGTAATGAGTTAATGGAGACAATATACA
GCATTGGGTGCTTAGATAGAGGAGA
>chr2A_282
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-----------------------------------------CCTAGTCTCTTCATTCCACTCCCCTTCACTACCCAAGCT
CTCGTCTGGTCTTCTTCGGCATGGCAGGCGGCGGATCCAAGTTCTTCACCTCCAGACCCGTCGACCCCTAGCTCATCCCA
TGCGGCCCCAAGGAGGAGATGGTTGTCCGGCTTGCGCTCTGCCGTTCCCGGGAGGAGGCCCGTGCGAGGCGGCGCTCAGA
CTCCTTTTATCGGGAATCCATCATCTATCTGACGTCCACAGACACCTTTCAATTTTCGGGCTCCGACGAGAAAGAGTAGG
ACATGGGAGACGGCGCCTTGAGTCTCGTGAGCCGGCTCGTGTCCCATGCCCTACTCTACCTTACCGGTGACCGGACCAAC
ACTCTAAGAAGCGCAGCCGGTCGCCGGACATGGACATGGCAAAACTGGGCGAGCTCCGCTGAGATTAGGTTTCACGTTTC
ATGTAATAACATGAATTTAAGATATCTAATTTAAAATATCCAATTATAGAATCAAATATTTGAGACTGCCGACACGCGAC
GTTTGAGAGATCGGATTTAAGTCTGATTGTAGATGCTCCAATGGTATCGGCCGTGAGATGATTCGTATCAGGAGGCTAGA
CCGGCGGGCACAATAGGCTGATGCACTAACCTTTTGACATCTGACACGACATGTCACGGCCCGGTTCATTTGTTTTACTT
TTACCAAAGCAGCTGCGTGTACGTGCCGCGACACGTGTCCCGGAAGTCGGCAGCCTCGCTCGGCGACCTGTCCTCTCCAA
CCGCCGCACGTACGTGGTGCCTCACGTGTCCGCCCCAGCGATCAAAACTCCCACCCAACACCACCACGTACGGTCCGACC
GTCCGAGCCAATCCAGGAGCGCCGCCGAGCCCTCCTCCCTCCCGTCCCGATCATTTCTCTCCGCCACCACCACCAGCCGC
AAAA--AAAATGTGCGGAAAGGGCCGGAACAACGGGCTCGCGTCGCCGGCGGGGACAAGCGGCACGGCGACCGCCATCGT
CGCCCTCGCGTCGCTGCTCCTCGCGGCCTCGGTCGTC---GTCTTCCTCGTGTCGCCGCCGGCGCCGGCGGC---GGACG
AGAAGCCCCCCGAGCCGGTGGAGCTCGCCATCGGCGTCGCCGGGCACGAGGGCTGGCTGGACGCGCTCCGGGCGTGGGCC
AAGCTGGCGTGCCTCAAGCTCCGCCCGCTCGAGCCAAGGTACATATCGTGCTCTCTTCTTTCTTTCTCCGTGCACGGGTC
CAAGCACGCGTGCCCTCATCTCATGGCGTGTTGGTTACTTGTTTTTGCGTGGCGGCTGATGAAGGTGTGATCTGAGGAGC
TCGGGGTCGATGAAGAAGGCGGCCAAGCAGAGCCTGGCGATGGGCAAGGAGGCCGTGGAGCAGACGGCGGTGTCGGCGGC
GAGGGCCGCCGAGGAGACCATCGGGAGGACCACCGAGAAGGTGCGGAGGAAGGTCTCC---CCGTCGCCGTCGACGTCGT
CGGCGCCACTCGCCGATGGAGACCTGTGATCTGCATGCAGGTCGACGCAAGCGCCAAAATTTTCCGAGCTGTATCCCTCC
ACTTTATGTTACCTGTAAGCTGTAGCTTTCTACTAGTGCGAGAAGAAAAGATGGCCCCCTCGGCGATATGT--------A
TGCGTATGAATATCCTGCGATTCTGTTTTTCTCTGTACCCTGCTTGTGAATATGAGACGGTCTAGATCGGAAGTTTTCTC
GGCAAAAAAAAAAAGGAAATGCATTTTGGCTGCGAAAAGTTGCATTGTCACCAATCTGCAGCCATGTCGATGAGAGGTCA
GAGCCCAGGTGTTGGTAACAGAATTAG-TAGCAGTTGCATCAATGG-----A----------GCAGCACAATGGCATTTG
TTGCTGCAACTCCTTGCAATACTCT------T---TAACAAACGGCAAGCGAATGGGTCCGCTGCCGGCTCAAGTCGACC
-ATAGCATGATTTTCTCAGAGACTAGAGTGGAGAGAGATTCTCCACTGGGAAACTAGTAAACAGTCTTCTTCCTTCAGGA
GTAACATAACATCTGATCTCACAGGCCTATGGTATGGACACAGGAGGGGTACACGGAATATACAGGGCAATGCAATCCAT
TTCATCCATGTCGCGGAGGACCGGCATCGCCGCGTCGCTCTATTCCGGGCAGATTTCCCTGAAGATGGGCAGCCTGCGTC
GGCCGCTGCGCCCGTAGAGGGCCTCGGCTATCAGGTCGTCTTCCTCCTCGGTTGGCTGTGCTGCTGCAGACACCGCCTGC
CCTGAAGGTGTCGTCGAACCAGGTTTCGGTGTCGACAGAAGGTCCGGCCTGTTTCCTAGGATGACAGCACCATCTGGTGA
TCGGAAGTTGGAAAATGTTTGCTTGAGTTCGGGAAAACCTGGTGCGCCAGTGAGCCCGCCAGCCTATGCAACATGAAACA
AGACAGAACAGATGTTACTGCATATAGCACACTGTAGATTTTGATGATAAAGGA--------CTGTCAAAAAGGGAAATA
TATTAGGCTAGTCACCAAACTAGCTTAAGAGAATGATTCTAGTAAAT---CATCTTATGGTTGTGTTGGTTTAGAGGGAG
GCTGCATGAACATGCTAACAATTTCAGCTATAGGATGAAGAGAAGAATAGCAAGTAATGAGTAAATGGAGATAATATATA
GCA----------------------
>chr2B_804
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---------------------------------------------ATGACATGGTACGGCCCGGTTCATTTGTTT-----
-TACCAAAGCAGCTGCGTGTACGTGCCGCGACAGGTGTCCCCGAAGTCGGCAGCCTCGCTCGGCGACCTGTCCTCTCCCA
CCGCCGCACGTACGTGTTGCCTCACGTGTCCGCCCAACCGATCAAAACTCCCACCCAACACCACCACGTACGGTCCGACC
GTCCGAGCCAATCCAGGAGCGCCGC----------------------CGATCATTTCTCTCCGCCACCACCACCAGCCGC
AAAA--AAA-TGTGCGGAAAGGGCCAGAACAACGGGCTCGCGTCGCCGGCGGGGACAAGCAGCACGGCGACCGCCATCGT
CGTTCTCGCGTCGCTGCTCCTCGCGGCCTCGGTCGC---TGTCTTCCTTGTGTCGCCGCCGGCGCCGGCGGCTGCGGATG
GGAAGCCCCCTGAGCCGGTGGAGCTCGCCATCGGCGTCGCCGGGCACGAGGGCTGGCTGGACGCGCTCCGGGCGTGGGCC
AAGCTGGCGTGTCTCAGGCTCCGCCCGCTCGAGCCAAGGTACATGTCGTGTTCAC----TTCTTTCTCCGTGCACGGGCC
CAAGCACGCGTGTCCTCATCTCATGGCGTGTTGGTTACTTGTTTTTGCGTGGCGGCTGATGAAGGTGTGATCTGAGGAGC
CCGGGGTCGATGAAGAAGGCGGCCAGGCAGAGCCTGGCGATGGGCAAGGAGGCCGTGGAGCACACGGCGGTGTCCGCCGC
GAGGGCCGCCGAGGAGACCATCGGGAGGACCACGGAGAAGGTGCGGAGGAAGGTCTCCTCGCCGTCGCCGTCGC---CGT
CCGCGCCACGCGCCGATGGAGACCTGTGATCCGCATGTATCCCCGTCCACACCGCTCTCCTGCTTCACTG----------
--------TATGTAC----CTGTAGCTTTCTACTATTGCGAGAAGAAAAGATG---------TTGTAACGTGCTGTGAAA
TGTGTATGCGTATCCTTCGATTCTGCCTTTGTCTGTGCCTTGCTTGTGAATATGAGACGTC-------------------
------------AAAGGAATGCATTTTGGTTGCAACAAGTTGCATTGACAGCACTCTGCAGCCATGTCGACGAGACTTCA
TTGTCGAAGTGA-------TAACAGAAATAGCAGTTCCATCAATGAAAAAAAAAAACCTCCTGCAGCACAATAGCAACAT
GACTTGTCCAATGCATATGAAGTTTCTTAACTTGATAACAACCGGCATGCAAATGGGTCAGTTGCCGGCTCAAGTCGACC
-ATAACATGATTTTCTCAC---CTAGAGTGGAGAGAGATTTTCCACTATGAGACTAGGAAACAATCTTCTTCCTTCAGGA
GTAACATAACATCTCATCTCAAAAGCCTATGGTATGGACACAGGAGGGGTACACGGAATATACAAGGCAATGCAATCCAT
TTCATCCATGTCGGGGAGGACCGGC--------GTCGCTC-ATTCCGGGCAGATTTCCCTGAAGATGGGCAGCCGGCGGC
GGCCGCTGTGCCCGTAGAGGGCCTCGGCTATCAGGTCTTCTTCCTCCTCTGTTGGCTGTGCTGCTGCAGACATCGCCTGC
CTTGAAGGTGTCGTTGAACCGGGTTTCGGTGTCGACAGAAGGTCCGGCATGTTTCCTGGGATGACGGCACCATCTGGTGA
TCGGAAGTTGGAAAATGTCTGCTTGAGTTCGGGGAAACCTGGAGCGCCAGTGAGCCCGCCAGCCTATGCAACATGAAACG
AGACAAAACAGATGTTACTGCATATGGCACACTATACTTTCTGATGATAAAGGA--------CTGTTAAAAAGAGAAATA
TATTAGGCTAGTCACCAAACTAGCTTAATAGAATGATGATACTAGTAAACCATCTTATGGTTGTGTTGGTTTACAAGGAG
GCTGCATGAACATGCTAACAATTTCAGCTATAGGATGAAGAGAAGAATAGCA----------------------------
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>SNPs
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS-----S-------S-----------------S-------
-S-----S-------S-------------S-S------S-S-S---------S---S--S--------S----S------
S--------S-------------S---------------S----S-------------------------S---SS-S--
------S-S----S-------S------S---S-------SS----S---SS------------------S---------
---------------S----------------------------------S-----------S----S------------
------S-------------S-----------------------------------S---S-S----S------------
---------S-------------S-S--------SS-S---S------S--SS---------------------------
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-----------------------S------S-------------------------------------------------
---------------------S------------------------------S---------------------------
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------------------------------------S---------------S------S--S-----------------
----SS--------------------------------------------------------------------------
-------------------------------------SS-S----S--SSS-S--S-----S-------S----------
----------------S--------------------------------------------------------------S
-------------------------------------------S---------------------------S--------
----S---------------------------------------------------------------------------
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-------------------------------------------S-------------S---S------------------
---------------------------------------------------------------S----------------
SSSSS-SS-----------------------------SS-----------S---SSSS------------------S-S-
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------------------------------------S---------------S-----S---------------------
--------------S---S------------------------------------S------------------------
----S-----------------SS-S--S-------------S-------------------------S-SSSSSSSS--
S-----------S---------------------------------------------------------------S-S-
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-----------------------------------------------------------------------S-------S
S-------------------------------------------------------------------S-----------
------------------------------S----------------------------------------------S-S
-S-----SS------------------S------------------S-------SSSSSSSS------S------S----
----S--S--------------------------------------SS-S-----------------------------S
-----------S------------------S---------------------S---------S--------S------S-
---SSSSSSSSSSSSSSSSSSSSSS
>forward_89
---------------------------------------------------------------------AGCCAGTATAA
CCCGGGGAT-----------------------------------------------------------------------
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>reverse_1318
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-------------------------------------GCTTTCTTTCTGTCGCCGTC-----------------------
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>forward_266
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------GCCTAGCTCACATGCCTCAT------------------------------------------------------
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>reverse_1319
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--------------------------------------CTTTCTTTCTGTCGCCGTCG----------------------
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>forward_647
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-------------------------------------------------------------------CGACCGGACCAAC
ACTCTAG-------------------------------------------------------------------------
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>reverse_2629
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--------------------------------------------------------------------GCCATCTGGTGA
TCGGAAGT------------------------------------------------------------------------
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