>input_sequence_69840
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
---------------------------------------------------ATGCCCACCGGAGGAGACGCCGGG-----
-GGTGGTGGTGGTGGTGGTGGGGAGAAGGGAAGGAGGAAGAAGGTGGAGCTGCTGCAGGAGGCCATTCATGGGCTCCTGG
AGGAGAAAAGGGGCAAGCAGCGACACC------AAGGGGAAGAGGGCGCCATGGATCATGAGGAGGATCTCTTCCTCTCC
TCGTTGCTCTCCAAGGTATCTATCTATGTGTGCGCTTCTTCCTGTACATCTGAATTGTTTCAGGTTGCAGATGCACCTTT
TGGTCCCAAGATTGGATTGCATCTGCCGCTGCAATTACCAGACATTC---------------------------------
----------TGCATTCATTTCATTTCATCATTCTTGAGACGCAAATCCTGAATTA---------TTTCAACAGTTGGAC
TCGCTGGAAAACGATGTCGATCCGGACGGTGCCGAACCGAGCTCCATCAATCCTCACCCGGAGAGCGGCGAGGAGGCGGG
GCCAGGCGACGTGGCGAAAGACCTGGGCAAGATCAAGAGGCAGAACATGATCACCCACATCCTGCTCGGCACGGTGATGG
TGATGATCGCCGCGTGGCAGTTCAACGAGGTGTCGTTCCTCCTCGCGGTGCAGAAGAAGCTGACCAACCCTTTCAAGTCC
GTCGGGGACATGGTCAAGAGCACCCTCAAGATAGGGAAGAAGCCGATGGCCGAGGCGATCGAGGCGTCGCCTCTGCCCCC
TGTCGGCGCCCCGGACGTTGCTCGGGCTGATCTGCCGATGCTGGCCATCGGCGACGGCGATAGCTAG-------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
---------------------------------
>chr2A_1_TraesCS2A01G346700
AACACAGATGGCAGCTTTGTTGCAGCCACAGGAGCAGCAGGAGGAGGCATGATCCTTCAAGATGATGGAGGGGATATCAT
CTATAGCGCGTGCAGAGAAATTCGCACGCGTGAGAGTGCGCTGGAGGCGGAGCTCTCGGCGTGTAGAGAAGGCCTAGACC
TTGCCTTACACAGGACGACGATGCCTATCATTGTTGAGATGGATAGTGCGGAGGCTGTGGCGATGCTCAAAGCACCCACA
ACAGATAGATCGCAGCTCTCGTTGAAGAGATTAGCAGTCTAGCAGCCCTTGAGGCTAGAGAGGTTGTATTTGCGCAGTGT
AGCCATTGGCAGAACAACGCTAGTCATGTGTTGGCTGCGTATGGGCGTAGTACCCCCCGCACGGCAGTCTGGTTCGCAGG
AGGGTCGGACTTTCTTGTAAACTTGGTTAAGGCTGAGAAACCTCCTTGAGTAATGAAATTTTTTCCTCCCAAAAAAAAAT
ACATTTCTTTCCAGAGCACACGAATCTTTTCAAGATCCTTGCTCTCGTCTG-----CCCGTGGCGCCACGTCGTCGGACA
AAAGAGGCCCCTAGATCGAGATCGAGCACGATGCAAGGAGCATGTGGCCCGCACACGAGTTCCCATGCGGTCGCCACGCC
ACACGTCGCACATGCGAACTGTACAGTATTTAGCCCTGTCGTCAAGGCCACCTCCGGCCAGCCGCCGCTGC------CGC
TGCTACGCCATTTTTGGATCCCCCGTCCTCACCCCCTGTCCGCCAGCAGCCGCAGACCTCGCGATCTCATCTCGCCGTCG
CCTGGATTGCCAGTTGCAGCGCCCGTTTGGCAGGAGCCTAGAAACACCTATCTGGGCCCGAAGGATCCCTCTGAAATCTG
AATCCACGATAGCGACATGAATTTTGTGTAATTTTCCTCCAATTGGGAAAGGGGCGTGCAGCTTCCTCTGTTTTCTTTCG
TTTTCAGCCGTTCCTGCGCGTCTGCTCTTGTCCCATTCAATCGGCGTCGGCATGCCCACCGGAGGAGACGCCGGG-----
-GGTGGTGGTGGTGGTGGTGGGGAGAAGGGAAGGAGGAAGAAGGTGGAGCTGCTGCAGGAGGCCATTCATGGGCTCCTGG
AGGAGAAAAGGGGCAAGCAGCGACACC------AAGGGGAAGAGGGCGCCATGGATCATGAGGAGGATCTCTTCCTCTCC
TCGTTGCTCTCCAAGGTATCTATCTATGTGTGCGCTTCTTCCTGTACATCTGAATTGTTTCAGGTTGCAGATGCACCTTT
TGGTCCCAAGATTGGATTGCATCTGCCGCTGCAATTACCAGACATTC---------------------------------
----------TGCATTCATTTCATTTCATCATTCTTGAGACGCAAATCCTGAATTA---------TTTCAACAGTTGGAC
TCGCTGGAAAACGATGTCGATCCGGACGGTGCCGAACCGAGCTCCATCAATCCTCACCCGGAGAGCGGCGAGGAGGCGGG
GCCAGGCGACGTGGCGAAAGACCTGGGCAAGATCAAGAGGCAGAACATGATCACCCACATCCTGCTCGGCACGGTGATGG
TGATGATCGCCGCGTGGCAGTTCAACGAGGTGTCGTTCCTCCTCGCGGTGCAGAAGAAGCTGACCAACCCTTTCAAGTCC
GTCGGGGACATGGTCAAGAGCACCCTCAAGATAGGGAAGAAGCCGATGGCCGAGGCGATCGAGGCGTCGCCTCTGCCCCC
TGTCGGCGCCCCGGACGTTGCTCGGGCTGATCTGCCGATGCTGGCCATCGGCGACGGCGATAGCTAGATCCGCAGGATGA
GGAGGGATGACTCGTGCGGCAGAAATGCCATGTGTTCTTCCCTCCA-GATATTGTTATGTTGTTCGTCTTGTCTAGAGAT
GAGATTTGTATGGCCATGTGCCGGTGCATGTGTTCTGGGCTGGTGCCGCAAGTAGGAGAAACTGAATCTAATTCGGCATC
TTATGATCTTTGCACCATTTGTTACTGGAGTCGACCATCATCACCTGAAGAATGCCTGGGACGGTTGAACCATCTCTTAG
AAACAGCCCTGTATTTCAGACAAGGGTGAAGTGGAGGAATGTGTTTGATTGATTTCCATGTGTAGTTTCAGCAAACTCTT
TGTACTACTACTGAAGCAAGCGTGTCTGTAGCTGAGCTGATGTCTGCAGTTACACTTCATTTCCCTCCAGATATTGTTAT
GTTGTTCGTCTTGTCTAGAGATGAGATTTGTATGGCCATGTGCCGGTGCATGTGTTCTGGGCTGGTGCCGCAAGTAGGAG
AAACTGAATCTAATTCGGCATCTTATGATCTTTGCACCATTTGTTACTGGAGTCGACCATCATCACCTGAAGAATGCCTG
GGACGGTTGAACCATCTCTTAGAAACAGCCCTGTATTTCAGACAAGGGTGAAGTGGAG-----GAATGTGTTTGATTGAT
TTCCATGTGTAGTTTCAGCAAACTCTTTGTACTACTACTGAAGCAAGCGTGTCTGTAGCTGAGCTGATGTCTGCAGTTAC
ACTTCATTTCTCCCGGGAATCCTGTTGTGTGGATGTGATAAAAAAGGGCAACCTGGTGCATGTAGCTCCCGCTTGCGCAG
GGTCCAGGGAAGGGTCCGACCATTTTGGGTTTATAGTACGCAGCCTTTTCCTACATTTCTGTAAGAGGCTGTTTCCAAGA
CTTGAACCCATGACCTCATGGTCACAAGGCAGCAGCTTTACCACTGCGCCAAGGCTCCCCTTCACTGGATGTGATGTTTC
TGCAAATTCTGATGGTATAGTTTTCATACAGTT
>chr2B_472
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
-----------------------------------------------------------------------AAAATATAT
ACATTTTCTTTCAAAGCACACGAATCTTTTCAAGATCCTTGCTCTCGTTTG-----CCCGCGGTGCCACGTCGCCGGACA
AAAGAGGCCCCT------AGATCGAGCACGATGCAAGGAGCATGTGGCCCGCACACGAGTTCCCATGCGGTCGCCACGCC
ACACGTCGCACATGCGAG-----C--TATTTAGCCCTGTCGTCAAGGTCACCTCCGGCCAGCCG------C------CGC
TGCTACGCCATTTTTGGATCCCCCGTCCTCACCCCCCGTCCGCCAGCAGCCGCAGACCTCGCGATCTCATCTCGCCGTCG
CTTGGATTGCCAGTTGCAGCGCCCGTTTGGCAGGGACCTAGAAACACCTATCTGGGCCCGAAGGATCTC-------TCTG
AATCCACGACAGCGACATGAATTCAGTATAATTTCT-TCCAATTGGGAAAGGGGCGTGCACGTTCCTCTGTTTCCTTTCG
TTTTCAGCCGTTCATGCGCATCTGTTCTTGTCCCATTCAATCGGCGTCGGCATGGCCACCGGAGGAGACGCCGGG-----
-GGTGGTGGTGGTGG------GGAGAAGGGAAGGAGGAAGAAGGTGGAGCTGCTGCAGGAGGCCATTCATGGGCTCCTGG
AGGAGAAAAGGGGCAAGCAGCGACACC------AAGGGGAGGAGGGCGCCATGGATCATGAGGAGGATCTCTTCCTCTCC
TCGTTGCTCTCCAAGGTATCTATCTATGTGCCTGCTTCTTCTTGTACATCTGAATT-TTTCAGGTTGCAGATGCACCTTT
TGGTCCCAAGATTGGCTTGCATCTGCCGCTGCAATTACCTGACATTCATCT---ACATACGACTTCATCCTCTGTCGATA
CAAATCCTGCTGCATTCGTTTCATTTCATCATTCTTGAGATGCAAATCCTGAATTTAACCAATCCTTTCAACAGTTGGAC
ACGCTGGAAAACGATGTCGATCCGGACAGTGCCGAACTGAACTCCATCAATCCTCACCCGGAGAGCGGCGAGGAGGCGGG
GCCAGGCGACGTGGCGAAAGACCTGGGCAAGATCAAGAGGCAGAACATGATCACCCACATCCTGCTGGGCACGGTGATGG
TGATGATCGCCGCGTGGCAGTTCAACGAGGTGTCGTTCCTCCTCGCGGTGCAGAAGAAGCTGACCAACCCTTTCAAGTCC
GTCGGGGACATGGTCAAGAGTAGCCTCAAGATAGGGAAGAAGCCGGTGGTCGAGGCGATCGAGGCGTCGCCTCTGCCCCC
TGTCGGCGTCCCGGACGTTGCTCGGGCTGATCTGCCGATGCTAGCCATCGGCCATGGTGATAGCTAGATCCGCAGGACGA
AGAGGAACGACTCGTGCAGCAGAAATGCCATGTGTTCTCCCCTCCAAGATATTGTTATGCTGTTCGTCTTGTCCACAGAT
GAGATTTGTATGGCCATGTGCTGGTGCATGTGTTCTAGGCTGATGCCGCAAGCAGGAGAAACTGAATTTAATTCAGCATC
TTTTGATCTTTGCACCATTTATTA--------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
-------------------------------------------TTACTGGAGTCGATCATCATCATCTGAAAAATGCCTG
GGGAGGTCGAACCATCTCTTAGAAACAGCCCTGTATTTCAGACAAGGG-----TGGAG-----GGATGTGTCTGATTGAT
TTCCATGTGTAGTTTCAGCAAACTCTTTGTACTACTACTGAAGCAAGCGTGTCTGTAGCTGAGCTGATGCCTGCAGTTAC
ACTTCATTTCTCCCAGGAATCCTGTTATGTGGATGTGAT-----------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
---------------------------------
>chr2D_480
TAGATTC-------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
------CTTTCCAAAGCACAAGAATCTTTTCAAGATCCTTGCTCTCGTTTGCCCGTCCCGTGGTGCCACGTCGCCGGACA
AAAGAGGCCCCT------AGATCGAGCACGATGCAAGGAGCATGTGGCCCGCACACGAGTTCCCATGCGGTCGCCACGCC
ACACGTCGCACATGCGAACTATAC--TATTTAGCCCTGTCGTCAAGTCCACCTCCGGCCAGCCG------CCGCTGCCGC
TGCTACGCCATTTTTGGATACCCCGTCCTCAACCCCCGTCCGCCAGCAGCCGCAGACCTCGCAATCTCATCTCGCCGTCG
CCTGGATTGCCAGTTGCAGCGCCCGTTTGGCAGGAGCCTAGAAACACCTATCTGGGCCCGAAGGATCCC-------TCTG
AATCCACGACAGCGACATGAATTTTGTGTAATTTTCCTCCAATTGGGAAAGGGGCGTGCACGTTCCTCTGTTTTCTTTCG
TTTTCAGCCGTTCCTGCGCGTCTGTTCTTGTCCCATTCAATCGGCGTCGGCATGGCCACCGGAGGAGACGCCGGAGGTGG
TGGTGGTGGTGGTGG------GGAGAAGGGAAGGAGGAAGAAGGTGGAGCTGCTGCAGGAGGCCATTCATGGGCTCCTGG
AGGAGAAAAGGGGCAAGCAGCGACAGCAAGGGGAAGGGGATGATGGCGCCATGGATCGTGAGGAGGATCTCTTCCTCTCC
TCGTTGCTCTCCAAGGTATCTATGTCT----CTGCCTCTTCTTGTACATCTGAATTGTTTCAGGTTGCAGATGCACCTTT
TGGTCCCAAGATTGGATTGCATCTGCCGCTGCAATTACCTGACATTCATCTGCTACATCCGACGTCATCCTTTGTCGATA
CAAATCCTGCTTCA-----TTCATTTCATCATTCGTTAGATGCAGACCCTGAATTTAT-------TTTCAACAGTTGGAG
ACGCTGGAAAACGATGATGATCCGGACGGTGCCGAACTGAGCTCCATCAATCCTCACCCGGAGAGCGGCGAGGAGGCGGG
GCCAGGCGACGTGGCGAAAGACCTGAGCAAGATCAAGAGGCAGAACATGATCACCCACATCCTGCTCGGCACGGTGATGG
TGATGATCGCCGCGTGGCAGTTCAACGAGGTGTCGTTCCTCCTCGCGGTGCAGAAGAAGCTGACCAACCCTTTCAAGTCC
GTCGGGGACATGGTCAAGAGTACCCTCAAGATAGGGAAGAAGCCGGTGGTCGAGGCGATCGAGGCGTCGCCTCTGCCCCC
TGTCGGCGTCCCGGACGTTGGTCGGGCTGATCTGCCGATGCTAGCCATCGGCGACGGTGATAGCTAGATCCGCAGGATGA
AGAGGGATGACTCGTGCGGCAGAAATGCCATGTGTTCTCCCCTCCA-GATTATGTAATGTTGTCCATCTTGTCTACAGAT
GAGATTTGTATGGCCATG------TGCATGTGTTCTGGGCTGATGCCGCAAGTAGGAGAAACTGAATTTAATTCAGCATA
TTTTGATCTCTGCACCATTTATTACTGGAGTA------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
-------------------------------------------------------ATCATTATCACCTGAAAAATGCCTG
GGAAGGTTGAACCATCTCTTAAAAACAGCCCTGTATTTCAGACAAGGG-----TGGAGTGGAGGAATGTGTTTGACTGAT
TTCCATGTGTAGTTTCAGTAAACTCTTTGTACTACT---GAAGCAAGTGTGTCTGTAGCTGAACTGATGTCTGCAGTTAC
ACTTCATTTCTCCAAGGAATCCTGTTGTGTGGATGTGAT-----------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
---------------------------------
>SNPs
S-S-SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS----S-S--
-------------S----------------------------------S--------------S---------S------
------------SSSSSS--------------------------------------------------------------
--------------------S---SS--------------------------------------SSSSSS----------
------------------------------------S-------------------------------------------
---------------------------------------------------------------------SSSSSSS----
---------S--------------------------------------------------SS------------------
------------------------S-----------------------------S-------------------------
---------------SSSSSS-----------------------------------------------------------
----------------------------------------S---------------------------------------
------------------------------SSS--------S--------------------------------------
---------------------------------------S----------------------------------------
-----------------S----------------------S--------------S------------------------
S------------------------------------S------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------S------------------------S---S------------------------------
--------S---------------------------------S--------------S----------------------
S-------------------------------------S------------------------------------S----
---------------------S--------------------S------------------------S------S-----
--S-----------------S----------SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS-------------S--------------S--------
---S--------------------------------------------SSSSS---------------------------
--------------------------------------------------------------------------------
--------------S------------------------SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
>forward_244
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
----------------------------------------------------------------GCTCAAAGCACCCACA
ACAG----------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
---------------------------------
>reverse_2174
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
-------------AAGCAAGCGTGTCTGTAGCT-----------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
---------------------------------
