>input_sequence_69813
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----------------------------------------------------------------------ATGGAGCAGC
AGGAGGAGGCACCGACGTCGACGACGATGACGGTGTCGCTGGCCACGTCGCCCAAGCCGGCGCCGGCGAGCAACGGCAGC
AAGAAGCAGCTGCCGTCGCGGTTCCGCCGGGTGTGCGTCTTCTGCGGGAGCAGCCCGGGGAGGAAGCCGGCGTACCAGCT
GGCCGCCGTGCAGCTCGGGCAGCAGCTGGTGGAGCGCGGCATCGACCTCGTGTACGGCGGCGGCAGCGTGGGGCTGATGG
GCCTGGTGTCCCGCGCCGTGCACGGCGGCGGCGGGCGCGTCACGGGCGTCGTGCCCCGGTCAGTGCTCCCGCGCGAGCTC
ATCGGCGAGACGCCCGGCGGCGAGGAGGTGAAGGCCGTGTCCGGCATGCACCAGCGCAAGGCCGAGATGGCCCGCCGCGC
CGACGCCTTCGTGGCGCTCCCCGGCGGCTACGGCACGCTGGAGGAGCTGCTGGAGGTCATCACCTGGGCGCAGCTCGGCA
TCCACGACAAGCCCGTGGGCCTGCTGAACGTGGAGGGGTACTACGACTCGCTGCTGGACTTCATCGACAGGGCGGTGGAC
GAGGGGTTCGTGTCGCCGGCGGCAAGGCGCATCATCGTCGCGGCGCCCACGCCCGGCGAGCTGCTGGCGGCGCTGGAGGA
GTACGCGCCGGCGCACCAGGACGCATCCGCCATCAAGCTCAGCTGGGAGTCGTCGGTGGACACCATGGCGTGCTCGCCGC
CCAGGCCGGACATCTCGCGCTAG---------------------------------------------------------
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>chr5B_1_TraesCS5B01G561300
TAGTCGGCCCATACCGTGGATTTAATTAGTGAAAATGATGGGTCCACATGTGGACAGATGGAGTGGTACTGGCACAAGTG
GACATGTGGGACCACCGGCGCCACCTCAGAGTCTTAAGTGCACTACCTGTGTACACAGACGCATGCGTGTGTACGTAC--
--ACGTTTATCCAGCACCCTCGTGTCCGTCCCTGGACCAAACAACGCTAGGTAGATGTATACAGATAAGAT---GTACGT
GCTCCGTATCTCTTCATTC-TTGCCTTGGTAGTAGATGAAGATGAACAACTAAAGAGATCAGTTGCTTCATGGATTTGGA
ACAAGAAACTAACTAATGGCTTTGTTCATAGGGGTCAGGTGTGGGTGCGTGTGTTTTTATGGATAAGCGTATGTAAATGA
TATCTACGTCTATACTGTGTTAAAAAAAATTAATCCTTCCATTCCTAA--------------------------------
--------------------------------------------------------------------------ATATAA
GTGTTTGTAGAGATTTCATTATGGACTACGTACGAAGCAAAATGAGTGAATTACACTTTAAAATGCATCTACATACATCC
GTATGTGGTCCA------TAGTGAAATCTCCACAAAGACTTATATTTCGGAACGGAGGGAGTAACTA-------------
----------------------------------------------ATGGCTTTGTTAATCTGCAAGTATGAACATGTAT
CACACAT--GAGATTGATTTAATCAAACTGGTTGACTCGGGAGAGAGAAGGTAGACGAAGCCACGAGAGGAGATCGCCCA
GAATCTTCTCTCCAGCCAACAATAGCTAATACCCACATCTTAATTAGCAACAAATTGCTAATCAAAATCAACTATAG---
TAGATGAAGATTAATGGATAATTATT---ATATAGTCC---CTATCCAAGCAGCT---AGGAGGAGGAAGAAGACCAAGA
CCAACGCAACACAACTCAACACAACAGTAGGCTATATATACGTGCCCACACCGGCCGGGCTACCTCTCATCCCCCTTCCG
GCCGGCACATA---------------------------------------------------------------------
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--------------------------------------------------------------------------CATAAA
CTCGCCCAT-----------------------------------------------------------------------
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-----------------------CTAGATTCTCTACCACCGTTGATCGACCGAGAGACAGACAGACAGACATGGAGCAGC
AGGAGGAGGCACCGACGTCGACGACGATGACGGTGTCGCTGGCCACGTCGCCCAAGCCGGCGCCGGCGAGCAACGGCAGC
AAGAAGCAGCTGCCGTCGCGGTTCCGCCGGGTGTGCGTCTTCTGCGGGAGCAGCCCGGGGAGGAAGCCGGCGTACCAGCT
GGCCGCCGTGCAGCTCGGGCAGCAGCTGGTGGAGCGCGGCATCGACCTCGTGTACGGCGGCGGCAGCGTGGGGCTGATGG
GCCTGGTGTCCCGCGCCGTGCACGGCGGCGGCGGGCGCGTCACGGGCGTCGTGCCCCGGTCAGTGCTCCCGCGCGAGCTC
ATCGGCGAGACGCCCGGCGGCGAGGAGGTGAAGGCCGTGTCCGGCATGCACCAGCGCAAGGCCGAGATGGCCCGCCGCGC
CGACGCCTTCGTGGCGCTCCCCGGCGGCTACGGCACGCTGGAGGAGCTGCTGGAGGTCATCACCTGGGCGCAGCTCGGCA
TCCACGACAAGCCCGTGGGCCTGCTGAACGTGGAGGGGTACTACGACTCGCTGCTGGACTTCATCGACAGGGCGGTGGAC
GAGGGGTTCGTGTCGCCGGCGGCAAGGCGCATCATCGTCGCGGCGCCCACGCCCGGCGAGCTGCTGGCGGCGCTGGAGGA
GTACGCGCCGGCGCACCAGGACGCATCCGCCATCAAGCTCAGCTGGGAGTCGTCGGTGGACACCATGGCGTGCTCGCCGC
CCAGGCCGGACATCTCGCGCTAGCCGGCCGGCGGCCGGATCAACTCACCACCACCAACCACCAACCCAAGATTAGTTGAC
AAACACGCACAT------ATCAGACTCTAGATTATATATCCATTACCATCCAACCAAACATAGATATTCATCATCCGTAT
ACATATACTC----TGTAAATACTTTAGATATCTTGGAT----TAATGAATTAGATA-CC-ATATCATTCTGTGGCCCGT
ATGGTTGA---ATGTATGCAAATAC---TCTATGTTCTTGTGCTTGTGCATGGCTGACTTTCATTCTACTTGTGATGTTT
ATGCATCTTCTGTTCCCATTTCTGGGGAGAGAAGCCCATTTCCATTTGGGGTTTGATATGATTCGGATCCACAGCAGCAG
CG---GCAACATGATTGATCGATTGATTGCACTGCAAAAAAGATAGATAGATGGATGAGAGGAGGATTGATGATGGATGT
GGCGTCCCCAACCATCGGAAAAGTTGGGAAGGGGACAAGTGAGGTCGATCCATTCATGTCCATGTCCATCTGTCCTCTCT
TTCCCTCCGCAATTTGCATCCTAGCTGCATGGGTGTGCGTGTGTGAGGTCGCCAATTCAGGCACGTGGATGCACTACCAT
GGAACCAGCACTAGTGGCCGGGACCTGGTGCTGTGGAGGATAGGCCGGCAGTAACCAACCAAGTACTATGCACAACCAAC
ACAATAGACAAAGAATGATTGACAATGCTCACTACTCAAGTCACCCTCACCAATTCTTCTCATCAATTATCCTCCTTGTG
GCTAGCTAACAAGCCCCCACCCCCCCTCTCAGGTCACCAAATAAGTTTTTTCAGGTCTCCGAAATTGGGAGGCCCACAAT
CCCCACCTAAAATAAAATATCTGCATTTCAAGTCACTGGTTGAAGCCTACTGACGCCACCCAAGCTGCGCGGCGCGGCCG
ATACGAATGTCGTCGTCGTGCACCGATCCGGTAACTCTGAAGTTCCGACACCACATCTGAGTTGCGACACTAGATGAGGA
ACGAGAGA
>chr5D_1
TAGTCGGCCCATGCCGAGGGTTTAATTAGTGAAAATGATGGGTCCACATGTGAACAGATGGAGTGGTACTGGCACAAGTG
GACATGTGGGACCACCGGCGCCACCTCAGAGTCTTAAGTGCACTACATGTGTACACAGACGCATGTGTGTACGTACA---
-----TTTATCCAGCACCCTCGTGTCCGTCCCTGGACCAAACAACGCTAGGTAGATATCTACAGATAAGAAGATGTAT--
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----------------------------ACTACTCCCTCCGTTCCAAAATTCTTGTCTTAAATTTGTCAAGATACGGATG
TATCTAATACTAAAATGTGACTTGATACATCCATATTTGAACAAATCAAAGACAAGAATTTTGGAACGACGGGAATATAA
GTCTTTGTAGAGCTTCCACTATGAACCACATACGGATGTATATAGATGCACTTTAAGTGTAGATTCATTCATTTTGCTTC
GTATGTAGCCCGCCTAGCTAGTGAAATCTCTACAAAGACTTATATTTAGGAACAGAGGGAGTACTATTCCGTATCTCTTC
ATTCCCGCGTTGGTTGATGATTAACTATAAATAGATTAGTTGCTTTATGGCTTTGTTGATTTGCAAGTAGGAACATGTAT
AGCACAT--GAGATTGATTTAATCAAACTGGTTGACTCGGAAGAGAGAAGGTAGATCAAGCCACGAGAGGAGATCGCCCA
GAATCTTCTG--CAGCCAACAATAGCTAATACCCACAGCTTAATTAGCAACAAATTGTTAATCAA--TCAACTATATACA
TAGATAAAGATTCAGAGATAATTATTAC-ATATAGTCC---CTATCCAAGCAGCC---AGGAGGAGGAGGAAGACCAAGA
CCAACGCAACGCAACT-----CAACAGTAGGCTATATATACGCGCCCACACCGGCCGGGCACCTCTCCTCCCCCATTCCG
GCCGGCACATA---------------------------------------------------------------------
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------------------------TACATTCTCTAGCACCGTCGATCGACCGAGAGAG----AGACAGACATGGAGCAGC
AGGAGGAGGCGCCGACGTCGACGCCC---ACGGTGGCGCTGGCCACGTCGCCCAAGCCGGCGCCGGCGAGCAACGGCCGC
---AAGAAGCTGCCGTCGCGGTTCCGGCGGGTGTGCGTGTTCTGCGGGAGCAGCCCGGGGAGGAAGCCGGCGTACCAGCT
GGCCGCCGTGCAGCTCGGGCAGCAGCTGGTGGAGCGCGGCATCGACCTCGTGTACGGCGGCGGCAGCGTGGGGCTCATGG
GCCTGGTGTCCCGCGCCGTGCACGGCGGCGGCGGGCGCGTCACGGGCGTCGTGCCGCGGTCGGTCCTCCCGCGGGAGCTC
ATCGGCGAGACGCCCGGCGGCGAGGAGGTGAAGGCCGTGTCCGGCATGCACCAGCGCAAGGCCGAGATGGCCCGCCGCGC
CGACGCCTTCGTGGCGCTCCCCGGCGGCTACGGCACGCTGGAGGAGCTGCTGGAGGTGATCACCTGGGCGCAGCTCGGCA
TCCACGACAAGCCCGTGGGCCTGCTGAACGTGGAGGGGTACTACGACTCGCTGCTGGACTTCATCGACAGGGCGGTGGAC
GAGGGGTTCGTGTCGCCGGCGGCAAGGCGCATCATCGTGGCGGCGCCCACGCCCGCCGAGCTGCTGGCGGCGCTGGAGGA
GTACGCGCCGGCGCACCACGACGCATCCGCCATCAAGCTCAGCTGGGAGTCGTCCGTGGACACCATGGCGTGCTCGCCGC
CCAGGCCGGACATCTCGCGCTAGCCGGCCGGCGGCCGGATCAACTCACCGTCACAAACCACCAACCCAAGATTAGTTGAC
AAACACACACAT------ACCAGACTCTAGATTATATATCCATTACCACCCAACCAAACATAGATATTCATCATCCGTAT
A----TACTC----TGTAAATACTTTAGATATCTTGGAT----TAATCAATTAGATATCC-ATATCATTCTGTGGGCCGT
ATGGTTGA---ACGTATGCAAATAC---TTTATGTTCTTGTGCTTGTGCTTGGCTGACTTTCATTCTACTTGTGCTGTTT
ATGTATCTTCTGTTCCCATTTCTGGGGAGAGAAGCCCATTTCCATTTGGGGTTTGATATGATTCGGATCCACAGCAGCAG
CAGCAGCAACATGATTGATTGATTGATTGCAATGCAAAAG-GATAGATAGACTGATGAGAGGAGGATTGATGATGGATGT
GGCGTCCCCAGCCATCGGAAAAGTTGGGAAGGGGACAAGTGAGGCCGATCCATTCATATCCATGTCCATCTGTCCTCTCT
TTCCCTCTGCAATTTGCATCCTAGCTGCATGGGTGTGCGTGTGTGAGGTGGCCAATTCAGGCACGTGGATGCACCACCGT
GGAACCAGCACTAGTGGCCGGGACCTGGTGCTGTGGAAGATAGGCCGGCAGCAACCAACCGAGTACTATCCACAACCAAC
ACAATAGACAAAGAATGATTGACAATGCTCACTACTCACGTCACCCTCACCAATTCTTCTCATCAATTATCCTCTTGCTA
GCTAGCTAACAAGCCCCCA-CCCCCCTCTCAGGTCACCAAATAAGTTTTTTGAGGTCTCCAAAATTGGGAGGCCCACAAT
CCCACCTTA----AAAATATCCCCATTTCAAGTCACTAGCTGAAGCCTCCTGACGTCACCCATGCCGCGCAACATTGCCG
ATACAA-TGTCATCATCGTGGACCGATCCGCTAACTGTGAAGCTCCGCCACCACATCCGAGTTGCGACACTAGATGAGGA
AGGAGAGA
>chr4A_1
TAGTCGGCCCATGCCGTGGATTAAATTAGTGAAAATGATGGGTCCACATGTGGACAGGTGGAGTGGTACTGGCACAAGTG
GACATGTGGGACCACCGGCGCCACCTCAGAGTCTTAAGTGCACTACCTGTGTACACAGACGCATGTGTGTGTACGTACGT
ACACGTTTATCCAGCACCCTCGTGTCCGTCCCTGGACCAAACAACGGCAGGTAGATTTATACAGATAAGATGTAGTACGT
GCTCCGTATCTCTTCATTCCTTGCATTGGTAGTAGATGAAGATGAACAGCTAAAGAGATCAGTTGCTTCATGGATTTGGA
AGAAGAAACTAACTAATGTCTTTGTTCACAGGGGTCAGGTGTGCGTGCGTACATTATTAATAGT----------------
-----------------------------------------------A--------------------------------
--------------------------------------------------------------------------ATATAA
ATGTATGTGCGTATGTATGAGCATTTGCGTTTGCGTTACAAAGAAC----------------------------------
-------------------------------------------------------------TAACAA-------------
----------------------------------------------ATGGCTTTGTTAATATGCAAGTAGGAACATGTAT
AGCACATGAGAGATTGATATAATCAAACTGGTTGACTCGGAGGAGAGAAGGTAGACGAAGCCACGAGAGGAGATCGCCCA
GAATCTTCTCTCCAGCCAACAATAGCTAATGCCCACAGCTTAATTAGCAACAAATTGTTAATCAA--TCAACTATAG---
TAGATGAAGATTAAGAGATACTAATTATTATATAGTCCCTACTATCCAAGCAGCTAGGAGGAGGAGGAAGAAGACCAAGA
CCAACGCAACGCAACGCAACACAACAGTAGGCTATATATACGTGCCCACACCGGCCGGGCTACCTCTCCTCCCCCTCCCG
GCCGGCACATATAGGGTGTATTTGGTTCACAGCCAACGATGACCATACCAAAAAATTGGCGTGCCCGCATGATTTGGCTA
TCGTTTGGACTGGGGCCAAAATTTTGGCTCGCCCACCACGCCCTGGACCTTCCCATGTTATTTTCGCCAATTCTTTGGCT
TGTCGTCGGCGCGGAAAACATTCGCCAATAAATTGGCGAGTTCGACGCCCGCTCTTCCGTACGTGAATACGCTGTATTGG
AATGACAGGCGAATTATCCGGCCAAATAAACGCTAACTGAATCTAAACCTTCGCGCGCTATCGCAAATCTACCTGATTAA
ATTGGGTGTTTGCCTCCCTAATTAACTGCAGCCCTTTTTCTGCGTGAGAGTCGCTCCATGCACGCCATGCATGCTGGTAC
TGCCTCCGTAATCCAAAGCAACCCTAATAACAATTGCAACGATTTGTTTCCTAATCGTGTTTTCAATGCCGTGGACTTTA
GTCTCGTTGACCTTATAATCCCTTCTTTTTCTTTGTGGAACGGCCCATAGTCCTTTATGCGTCTCACTCTTTTAGCAGCC
TATATCATTGATAAACTAGAATCAAACCAAGCACTAACCCAATACATGTCACTAACCCAATACATGTTGCCATACATAAA
CTCAGTTGACTCCAAACCAAACGGAAGTCGAGCAACTTTGCCGTAAAAATTGGCATGTACAATGGCTATAAACCAAACAA
CACCATCTTTCCAAAATTTTGGTCATGCCCTTGCTTTAGTCATACCAATATTTTGGTGGGGCTAGTTGGGGCTCAAACCA
AACACACCCATACATTCCCCTAGCTAGATTCTCTGCCACCGTCGATCGACCGAGAGAGGC--AGATAGACATGGAGCAGC
TGGAGGAGGCGCCGACGTCCACGACC---ACGGTGGCGCTGGCCACGTCGCCCAAGCCTGCGCCGTCGAGCAACGGCAGC
---AAGAAGCTGCCGTCGCGGTTCCGGCGGGTGTGCGTGTTCTGCGGGAGCAGCCCGGGGAGGAAGCCGGCGTACCAGCT
GGCCGCCGTGCAGCTCGGGCAGCAGCTGGTGGAGCGCGGCATCGACCTCGTGTACGGCGGCGGCAGCGTCGGGCTCATGG
GCCTGGTGTCCCGCGCGGTGCACGGCGGCGGCGGGCGCGTCACGGGCGTGGTGCCCCGGTCGGTCCTCCCGCGGGAGCTC
ATCGGCGAGACGCCCGGCGGGGAGGAGGTGAAGGCCGTGTCCGGCATGCACCAGCGCAAGGCCGAGATGGCCCGCCGCGC
CGACGCCTTCGTGGCGCTCCCCGGCGGCTATGGCACGCTGGAGGAGCTGCTGGAGGTCATCACCTGGGCGCAGCTCGGCA
TCCACGACAAGCCGGTGGGCCTGCTGAACGTGGAGGGCTACTACGACTCGCTGCTGGACTTCATCGACAGGGCGGTGGAC
GAGGGGTTCGTGTCGCCGGCGGCAAGGCGCATCATCGTGGCCGCGCCCACGCCCGGCGAGCTGCTGGCGGCGCTGGAGGA
CTACTCGCCGGCGCACCACGACGGCGGAGGCGTGAAGCTCAGCTGGGAGTCGTCCGTGGACACCATGGCCTGCTCGCCGC
CCAAGCCGGACATCTCCCGCTAGCCGGCCGGCGGCCGGATCAACTCACC---ACCAACCACCAACCCAAGATTAGTTGAC
AAACACACACACACACACATCAGACTCTAGACTATATATCCATTACCATCCAACCAAACATAGATATTCATCATCCGTAT
A----TATATACTTTGTAAATACTTTAGATATCTTGGATGGATTAATCAACTAGATCTCGTATATCATTCTGTGGCCCGT
ATGGCTGGAGTATGTATGCAAAAATACTTTTATGTTCTTGTGTTCGTGCTTGGCTGACTTTCATTCTACTTGTGCTGTTT
ATGTATCCTCTGTTCCCATTTCTGGGGAGGGATGCCCATTTCCATTTGGGGTTTGACATGATTTGGATCCACAGCAGCAA
CAACAACAACATGATTGATTGATTGA----ACTGCAAAAAGATGA----------------GAGGATTGACGATGGATGT
GGCCTCCCCAACCATCGGAAAAGTTGGGAAGGGGACAAGTGAGGTCGATCCATTCACATCCATGTCCATCTGTCCTCTCT
TTCCCTCTGCAATTTGCATCTTGGCTGCATGGGTGTGC--GTGTGAGGTGGCCAATTCAGGCACGTGGATGCACCACCGT
GGAACCAGCACTAGTGGCCGGGACCTGGTGCTGTGGAGGATAGGCCGGCAGAAACCAACCAAGTACTATCCACAACCAAC
ACAATAGACAAAGAATGATTGACAATGCTCACTACTCAAGTCACCCTCACCCATTTTTCTCATCAATTATCCTCTTGCTA
GGTAGCTA------------------------------------------------------------------------
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>SNPs
------------S-------------------------------------------------------------------
-----------------------------------------------------------------S--------------
--------------------------------------------------------S-----------------------
------------------------S-----------------------S-------------------------------
-S----------------S---------S--------------S------SSS--S---SSSS-SSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSS-S--S---S---S----S----------------------------------
--------------------------------------------------------------------------------
------------------S----S--S--S----S-SSS----S-S--S-S-SS-SS-SS-S--S---SS-SS-SSS-S-
------S-S--S------------------S----------------S-----S-----------S--------------
------------------------------------------------------------S--------S----------
SS--------------------------------------S---------------------------------------
-------------------------------------S-------------------S-------SS-------------
--------------SS----------------------------------------------------------------
----------S---------------------------------------------------------S-----------
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---SSSSSS-----------------------------------------------------------------------
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------------------------------------------S--------------SSSSS------------------
----------S--------------SSSS------S--------------------------------------------
SSS---S-------------------S-----------S-----------------------------------------
---------------------------------------------------------------------------S----
-------------------------------------------------------------S--S--------S------
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--------------------------------------S-----------------------------------------
------------------S-----------------------------------S-------------------------
-------------------------------------------------SS-----------------------------
------S-------------------------------------------------------------------------
-SSSS------------------------------------------S--------------------------------
-----------------------------S-------------------S------------------------S-----
---S----------------------------------------------------------------------------
-S-----------------S--------------------S----------SS---------------------------
---------------------------------------------------------S----------------------
-------S-----------------------------------------S------------------------S---S-
---------------------------------------------------S-----------------S----------
--------------------------------------------------------------------------S-SS-S
-------------------S-------------------------------S--------S-------------------
---SS-S--SSSS--------SS--------------S-S--------S------S------S--S----SS-SSS----
----S-S----S--S-----S---------S-----S-----S----S---------S----------------------
-S------
>forward_1051
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-----------------------------------------------------------------------AGACCAAGA
CCAACGCAACA---------------------------------------------------------------------
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>reverse_3359
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------------------------------------------------------------------------------AT
GGAACCAGCACTAGTGGC--------------------------------------------------------------
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