>input_sequence_69812
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------------------------------------------ATGTCGTCCACCCCAGCCAGCAGCGAGCCCCATGACGC
GCCGGCCGCCGACAGCAGCGTGCCGGCGTCGAGGTCGATCGCGGAGCGGTGGAAGATGGAGGCGGCGCCGGTGCGGGCGC
GGCTGCTGCTCCGGGCCTTCGCGTGGCTCTTCTCCCTGCTGGCCCTCGTCGTCATGGCCACCGACGTGCACGGCCGCGGC
GGCGCCCAGGACTTCAGCACCTACCCGGAATACAAGCACGTCGTCCAGATCCATCCATCGACCCCCGTCTCATCACCCGT
CGCCTGATCTGAC-------CCCTTTCTTTCACCTGTCGCGCAGCTACTGCCTGGGCATGTCGATCATCGCGCTCCTGTA
CGCCACGGCGCAGCTGCTGCGCGACGCGCACAGGCTCAGCTCTGGCCGGGACCTCGTCGCCGGGCGGAAGGCGGCCGCCG
TCCTCGACTTCGCCGGAGATCAGGTACCAACCCCCAGCCAGATGTCTGTCAGTCTAACCACCTATATCGCCAACCGGCTT
TGAC-CCAACAACCTGAACGTGCTTCCTGGTCTGAAACTTA-ATGGTGGCAGGTGGTGGCGTACTCGTTGATTTCTGGCT
TGTCCGCGGCGGCGCCGGTGACGGACTACATGCGCCAGGCCGCCGACAACCTGTTCAACGACTCGGCCGCGGCCGCCATT
AGCCTCGCCTTCTTCGCCTTCTTGGCCATCGGCCTCTCTGCCCTCATCTCTGGGTACAATCTTTCCCTAGAAGCCCTTGT
TTAG----------------------------------------------------------------------------
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>chr5B_1_TraesCS5B01G484900
ACATCAAGATTATTTAATATGACTATATGACATCGAGCTATCGCGCTAAAATTGAGCGAGCTAGTGTTGGCTCAAGATTA
ACTCGTTTCTCTATCGAGCCAAATAAAGTGTTCATACTCAGCTCATTTCTTTTCGAGTCGATCTCGAGTCGAGTCAAAAT
ACGAGTTGATCTCAAGCGGCTCACGAGCCTCGAGCTTTTCTTGCAGCCCTACTGGTGAGGGTGTAGATTCAAATCTTCTG
AAGGAGGAGGCTGGCTTTTGCTTAGGGGGACTATAATAAGGCATGCAGGGAACTGTTTCAACCCCTGTTTTGGTTTCCAC
TGTTGTTGTGGTACTCACATGGCTTCTCTTTCTTCAATGAAATTTGGAGCGCGGGGGTGGGGGTGGGAGCTGATTTTTGA
AAAAAAAATCATTTTTCTCTATTACTTAAAAAGAATGTAAGGTTCCCGATTTATCTTTCTTCTCACCATCCTTCGTCCAA
CCTTCCTCATATACTAATCAATCACAATAATTTACGTACCTTAACCAATTTTACTTTAGTTTACTTAGTACCAAACATCT
GAATTCAATATAAGTTAAATCACAGACATAATCTAATGAACATTTATTTACACAATTGTATACTATGGGCAGGTAAATCA
CTTCTGATCATAATATATGGTAAATCACGTACATTATTTGATGAACATTTATTTATACAATTGCATATTACAGGCAGATA
AATCACAAGCTAACATACTAAAATATTTATATACCGTTGCAATGCACGGCATTGTTCTAGTATCATTTTATAAACCGATA
AGATGAAATTATGGTACTCTC-AGCACCCAACGTCGAAGTGACTCAGCCGGTTAGATTAAACAACGTCGAAA-CCCCGCC
GGTTTGTAACCGCAGTCTCGGCCCGCCGGCGCGCGGCCGGCACGCTCGAGTTTTATATACCAGGTCATCAGCTCGGCGCC
AAGTGTGCATCATCACCGTCCATTCCGACAGCCGGGTCCACGATGTCGTCCACCCCAGCCAGCAGCGAGCCCCATGACGC
GCCGGCCGCCGACAGCAGCGTGCCGGCGTCGAGGTCGATCGCGGAGCGGTGGAAGATGGAGGCGGCGCCGGTGCGGGCGC
GGCTGCTGCTCCGGGCCTTCGCGTGGCTCTTCTCCCTGCTGGCCCTCGTCGTCATGGCCACCGACGTGCACGGCCGCGGC
GGCGCCCAGGACTTCAGCACCTACCCGGAATACAAGCACGTCGTCCAGATCCATCCATCGACCCCCGTCTCATCACCCGT
CGCCTGATCTGAC-------CCCTTTCTTTCACCTGTCGCGCAGCTACTGCCTGGGCATGTCGATCATCGCGCTCCTGTA
CGCCACGGCGCAGCTGCTGCGCGACGCGCACAGGCTCAGCTCTGGCCGGGACCTCGTCGCCGGGCGGAAGGCGGCCGCCG
TCCTCGACTTCGCCGGAGATCAGGTACCAACCCCCAGCCAGATGTCTGTCAGTCTAACCACCTATATCGCCAACCGGCTT
TGAC-CCAACAACCTGAACGTGCTTCCTGGTCTGAAACTTA-ATGGTGGCAGGTGGTGGCGTACTCGTTGATTTCTGGCT
TGTCCGCGGCGGCGCCGGTGACGGACTACATGCGCCAGGCCGCCGACAACCTGTTCAACGACTCGGCCGCGGCCGCCATT
AGCCTCGCCTTCTTCGCCTTCTTGGCCATCGGCCTCTCTGCCCTCATCTCTGGGTACAATCTTTCCCTAGAAGCCCTTGT
TTAGCAGAAGCGCACACGATTCTCCCATCCCCTGTG-TATGTCACCTAGGCTAAGTACCTGTATAATTGGATCAAATGAA
TACTCAGAATTTTGTAAAATTGTA--------------------------------------------------------
---------------------------------------------------AATCAATTTCCACATGGCATCAATCCA--
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----------AGCGAGGGAATG---ATCACAGTGACAGCACGGTAACCCATTTCGCATTTCAAGATAAACCTACCACTCC
CCACATTCCAAAATACTT----------------------------------GGGAGTACAAATCTATAATGCAAACAAG
GGTT----------AAGAGAGGTTAACGATTTACAACAGACCTGAACAAATTGGTCTCCTAAGAACATGCCTACCTTCAA
CAGCCTTTTGCTGCCCGGGGAGGCAAGTATACACACAGTGAGGCCAAAAAGAATGCAGAGAAGAATGGCAAAAAAACATG
AACATATGGGCATTTCCCTATACTATATATACAAGAGAGAGACAAGGCTAAGAATGTTAGGACCATAAGATGGCATGGCT
GTGCACCCTGTCCAAGATCTTGCTGGTTTGGCACCTTTCTGCCAAGGAAAAAACAGCAGGAGGGCAAAATAATGGGTGCT
CTATGTGTCGCTCCAATTATCGTCGTCTTCGTCGTCACTTCCCACCGCCTGATCCATAACAGAAACATACGTAAGAGACA
AATAACTGAAAAGATGCTGACAGCAACATTG-GAGGTGAACTTTAGATGGGCAACCTGGCGTATGGCATTCGCTTTCTCT
ATTATTGCAGCAACTCTCAGGTTTCCACTAGAGGCTCTAGCAGGGGCTCTAATAGATGTTGGTATAGCAGAACCCACTGG
TTTCAGGTCAAAGGTCTGATCAAGTGCAAACAACAAACGAGTCAGGGAGACAGTGAGAGGATATATATGGCAAAAAGAAA
GATACTTCGATTTACTAACCTTGTTCCTTATTTGCTCAAGCCACAAGTTTTTATCATTGGCATTTGGCTTATCTGCGGTG
GGGGCAAGTTCTCCAACCTTGTTCCTTATCTGCTCTAGCCACAAGTTTTTAT
>chr5D_782
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-------------------------------------------------------------ATCATTTTATGAACCGATA
AGATGAAATTATGCTACTGTCGAGCACCCAACGTCGAAGTGACTCAGCTGGT-GGATTAACCAACCGCGAAACCCGCGCC
GGTTTGTAACCGCAGTCTTGGCCCGCCGGCGTGCGGCCGGCACGCTCGAGTTTTATATACCAGGTCATCAGTTCGGCGCC
AAGTGTGCATCATCGCCGTCCATTCCGGTCCAC---------ATGTCGTCCGCCTCAGCCAGCAGCGAGCCGCACGACGC
GCCGGCCGCCGACAGCAGCGTGCCGGCGTCGAGGTCGATCGCGGAGCGGTGGAAGATGGAGGCGGCGCCGGTGCGGGCGC
GGCTGCTGCTGCGGGCCTTCGCGTGGCTCTTCTCCCTGCTGGCCCTCGTCGTCATGGCCACCGACGTGCACGGCCGCGGC
GGCGCCCAGGACTTCAGCACCTACCCGGAATACAAGCACGTCGTCCAGATCCATCCATCGACCCCCGTCTCATCATCTG-
-------TCACCTGATCTGACCTTTG-----ACCTGTCGCGCAGCTACTGCCTGGGCATGTCGATCATCGCGCTCCTGTA
CGCCACGGCGCAGCTGCTGCGCGACGCGCACAGGCTCAGCTCCGGCCGGGACCTCGTCGCCGGGCGGAAGGCGGCGGCCG
TCCTCGACTTCGCCGGAGATCAGGTACCGACCCCCAGCCAGCTCTCTGTCTAACTAACCACCAATATCGCCAACCGGC-T
TGAC-CCAACAACCTGAGCGTGTTTCCTGGTCTGAAACTTT-ATCGTGGCAGGTGGTGGCCTACTCGCTGATATCGGGCT
TGTCCGCGGCGGCGCCGGTGACGGACTACATGCGCCAGGCCGCCGACAACCTGTTCAACGACTCGGCCGCGGCCGCCATT
AGCCTCGCCTTCTTCGCCTTCTTGGCCATCGGCCTCTCTGCCCTCATCTCTGGGTACAATCTTTCCTTGGAAGCTCTTGT
TTAGCAGAAGCACGCATGATTCTCAGATCCCCTGTG-CATGTCACCTAGGGAAAGCACCTGTATAATCGGATCAAATGAA
TACTCAGAATTTTGTAAAATTGTACTCCCTCCGTTCCTAAATATTTGTCTTTCTAGAGATTTCAACAGGATCCGTATATG
TAGTCCATTTGAAATCTCGAAAAGGACAAATATTTAGGAATGGAGGGAGTAAATCAATTTCCACATGGTATCAATCCA--
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----------AGTGAGGGGATG---ATC------ACAGCACACTAACCCATTTCACATTTCAAGATAAACCTACCACTCC
CAACATTCCAAAATACTGAGTATTCATACCACGACAAGTATTTTGGAATGGAGGGAGTACAAATCTATAATGCAAACAAA
GGTT----------AAGAGAGGTTAACGATTTACAACAGACCTGAACAAATTGGTCTCCTAAGAACATGCCTACCTTCAA
CAGCCTTTTGCTGCCCGGGGAGGCAAGTATACACACAGTGAGGCCAAAAAGAATGGAGAGAAGAATGGCAAAAAGAGATA
AACATATTGGCATTTCCCTATACTATATATACAAGAGACAAGAC---CTAAGAATGTTAGGACCATAAGATGGCATGGCT
GTGCACCCTGTCCAAGATCTTGCTGGTTTGGCACCTTTCTGCCAAGGAAAAAACAGCAGGAGGGCAAAATAATGGGTGCT
CTATGTGTCACTCCAATTATCGTCGTCTTCGTCATCACTTCCCACCGCCTGATCCATAACAGAAACATAGATAAGAGACA
AATAACTGAAAAGATGTTGACAACGACATTGCGAGGTTAACTTTGGAT-GGCAACCTGGCGTATGGCATTTGCTTTCTCT
ATTATTGCAGCAACTCTCAGGTTTCCACTAGAGGCCCTAGCAGGGGCTCTCATGGATGTTGGTATAGCAGAACCCACTGG
TTTCAGGTCAAAGGTCTGATCAAGTGCAAACAGCAAGCAAGTCAGTGAGATAGTGAGAGGGTCTACAGGGAGAAGGGAGA
GATTTCTG--TTTACCAACCTTGTTCCTTATCTGCTCAAGCCACAAGTTTTTATCATTAGTATTTGGCTTATCTGCGGTG
GGGGCAAGTTCTCCAACCTTTTTCCTTATCTGCTCAAGCCACATGTTTTTAT
>chr5A_815
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--------------TACTATCGAGCACCCAGCGTCGAAGTGACTTAGCCGGT-AGATTAACCAACGGCGAAA-CCGCGCC
GGCTTGTAACCGCAGTATCGGCCCGCCGGCGTGCGGCCGGCACGCTCGAGTTTTATATACCAGGTCATCAGTTCGGCGCC
AAGTGTGCCTCATCGCCGTCCATTCCGACAGCCCGGTCCACGATGTCGTCCGCCCCAGCCAGCAGCGAGCCGCACGACGC
GCCGGCCGCCGGCAGCAGCGTGCCGGCGTCGAGGTCGATCGCGGAACGGTGGAAGATGGAAGCCGCGCCGGTGCGGGCGC
GGCTACTGCTGCGGGCCTTCGCGTGGCTCTTCTCCCTGCTCGCCCTCGTCGTCATGGCCACCGACGTGCACGGCCGCGGC
GGCGCCCAGGACTTCAGCACCTACCCGGAATACAAGCACGTCGACTAGATCCATCCATTGATCCCCATCTCATCATCCGT
CTCATGATCACCTGATCTGACCCTTTCTTTCACCTACCGTGCAGCTACTGCCTGGGCATGTCCATCATCGCGCTCCTGTA
CGCCACGGCGCAGCTGCTGCGCGACGCGCACAGGCTCAGCTCCGGCCGGGACCTCGTCGCCGGGAGGAAGGCGGCGGCCG
TCCTCGACTTCGCCGGAGATCAGGTACCAACCCCCAGC--------TGTCTGTCTAACCACCAATATCGCCAACCGGC-T
TGGAGCCAACAACCTGAACGCGTTTCCTGGTCTAAAATTTTTATCGTGGCAGGTGGTGGCCTACTCCCTGATATCGGGCT
TGTCCGCGGCGGCGCCGGTGACGGACTACATGCGCCAGGCCGCCGACAACCTGTTCAACGACTCGGCCGCGGCCGCCATT
AGCCTGGCCTTCTTCGCCTTCTTGGCCATCGGCCTCTCTGCCCTCATCTCTGGGTACAATCTTTCCTTAGAAGCCCTTGT
TTAGCAGAGC--CACATTATTCTTCCCTGTCCTGTGGCATGTCACCAAGGGAAATCACATGTACAATTCGATCAATGGAC
-ACTCAGAATTTTGTAAAATGGCA--------------------------------------------------------
---------------------------------------------------AGTCAATTTCCACATGGATAATCACAAGC
ACACATGATTCTAGGGAAAGCACCTGTATAATTGGATCAATGGATACTCAGGATTTTGTAAACTGTAAGCCAATTGCCAC
ATGGTACCACAGTGAGGGGATATTAATC------AGAGCATGCTAACCCATTTTGTA-TTCAAGATAAATCTACTACAAA
TCTA-------------------------------------------------------------TATAATACAAGCAAA
AGTTTAAGACTTAAAAGAGAGGTTAACGATTTACATTAGACCTGAACAAATTGGTCTCCTAAGAACATGCCTACCTTCGA
CAGCCTTTTGCTGCCCGGGGAGGCAAGTATACACACTGTGAGGCCAAAAAGAATGCAGAGAAGAATGGCAAAAAAACATG
AACATATGGGCATTTCCCTACACTATATATACAAGAGAGAGACAAGGCTAAGAATGTTAGGACCATAAGATGGCATGGCT
GTGCACCCTGTCCAAGATCTTGCTGGTTTGGCACCTTTCTGCCAAGGAAAAAACAGCAGGAGGGCAAAATAATGGGTTCT
CTATGTGTCACTCCAATTATCGTCGTCTTCGTCATCACTTCCCACCGCCTGATCCATAACAGAAACATATGTAAGAGACA
AATAACTGAAAAGATGTTGGCAGCAACATTG-GAGGTGAACTTTAGATGGGCAACCTGGCGTATGGCATTCGCTTTCTCT
ATTATTGCAGCAACTCTCAGGTTTCCACTAGAGGCTCTAGCAGGGGCTATCATGGATGTCGGTTTAGCAGAACCCACTGG
TTTCAGGTCAAAGGTCTGATCAAGTGCAAACAGCAAGCAAGTCAGTGAGATAGTGAGAGGGTCTACAGGGAGAAGGGAGG
GATTTCT--ATTTACCAACCTTGTTCCTTATCTGCTCAAGCCACAAGTTTTTATCATTGGTATTTGGCTTATCTGCGGTG
GGGGCAAGTTCTCCAACCTTGTTCCTTATCTGCTCAAGCCACAGGTTTTTAT
>SNPs
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS----------S--------
-------------S----S---------------------------------S-------S-----S--------S----
-------------------------------S---------------------------------------S--------
--------------S------------------S-----------------S-------------------S--S-----
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----------S---------------------------------------------------------------------
---------------------------------------------------------------------------S----
-S-S-----SSSS-------------------------------------------------------------------
------------------------------------------S--------------------------------S----
-----------------------------------------S-S------S-----------S---------------S-
----------------------S-----------------S---S---------------S------S----S--S----
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------------------------------------------------------------------S-------------
-----------S----S--------------------S------------SS---S------------------------
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--------------------------------------------------------------------S-----------
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------------S-----S---------SSSSSS--------S-------------------------------------
-----------------S-------------------------------------------------------------S
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---------S-----------------------S-----------------------------------S----------
----------------S---------------------------------------------------------------
--------------------------------------------------S--S--------------------------
--------------------------------S---S-S------S----S---------S-S--S-S--SS--SS--S-
---SSS-SS------S---------------S----------------------------S-------------------
-----------------------------------S-------S--------
>forward_259
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-------------------------------------------------------------------------------G
AAGGAGGAGGCTGGCTTTT-------------------------------------------------------------
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>reverse_1777
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----------------CGATTCTCCCATCCCCTGTG--------------------------------------------
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