>input_sequence_69807
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--------------------------------------------------------ATGACCAACCTTCCGATCAGAGAG
---------CCGCCCAAGACCAAGGTTGGGGGTGACTCCTCCAGCTTGTACGACAAGACGCTGTCGACGGCGTCGAACCT
GGCGAGGCTGCTGCCGACAGGCACCACGACGGCGCTCCAGACGCTGGCGCTGTCCTTCACCAACCACGGCGACTGCCTGT
CGGTGAACCGCTACTTCACCTGGGCGCTCATCCTCTTCCTCGGCGTGCTCTGCGCGCTCCTCTCCTTCACGGACAGCGTC
ACCGACCGGCACGGCCACACCCGCTACGGCTTCGTCCACCCCTGGGGCTTCACGCCCTTCAACTCCGACGACTCGGATGG
GGGCGGGGCCATCCCCACCGGCGACA------GCAGGAGGCGGCGCATGCGGTGGCGGGACTGGCTGCACTCCGTGTTCC
GCTTCGCCGTCTTCATCTCGCTCGCCTTCTGCGACTCCGGCGTGCAGAAGTGCCTGGTCCCGCGCGAGAGCCCCCAGTGG
CGCGAGTTCCTCGGCAACATGCCCCTCGCCTCGGGCTTCCTCGCCAGCTTCGTCTTCATGATCTTCCCCTCCACCAGGCA
CGGCATCGGCGCCGGCCCCGGGGCCCCCGCCGCC------CTCGACGACCTCATCGACACCAATGCCAATGT------CA
ATGCCGCCGTCAAGAGTGGTGAGCTCAAGAAGAGCAAGAGTGCTCCCGCGGCCGCACACACCCGAGTTGCCCCGTCCACC
AGCTATC------AGCTCCACCATCACCATGTCGTCGTCTAG--------------------------------------
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-----------------------------------
>chr4D_1_TraesCS4D01G004900
GCGAGTGCGGCCTTATGCCGCGATGACAAATGTAACTATTTGGGTGGTTGATGGCCTCACGGATCCAGAAGTTTTAGAAG
CTCATGCTTGCTGTGAAGCATTCGCTTTAGCTGCCGATCTTCATATTCAGAGGATTAGACTAGCCACAGTGGGTAGTATT
ACTAGTCTACGTTACTATCTCTACAATGGGTAGTAATATATGTGTGGTGTTATGCAACACTTCATGTATTAGGATATAGA
CTCATCTTGCCTTGATATGTGTGATGTTACTCATAGTACTAGTAACTAGCTATGTTACTCTTTCTTCATTAATTGCTAGC
CACATCATCTATTTTATGTAGATATGTGTGATGTTACCACCTATGTTATTTCCATAGTGTGTAGTCTTAAGGTAGCAATG
TACTTTGCAGCCACCATGAATCACTTACAGGGAAAGTTTATGGGTACTTTTGCCATACTTATCAGTGATATCTTGAATAG
GCTGCTGATGTTGGACAAACCTGAAGTTGTGCATAAAGGACGGGAATCGAATTTCGAATTTTGAAGCCCATGATCTGGCT
AAAGCTTCGGCCTCTTTTCCCGCTGGACGGCATATTTGGTTATCTACCACTCCTACTGTTTTATTTGTACCAAACACTAT
TGAGAGGTAAATACACAGCCTGCTACGGCCTATGTGCGCCGCTCTTTGTCTGGTTATATGTGGGTCTGGTTAATTATGCT
GATCCTGCATATGCTTTGCTGCTGGACAGACCACATCACCAATCTTTACAATACAGAACGGACAAGATCTCCTAAAAAAA
CGGACAAGATAAGTGGGAGTCCCGACCCCCAGGTGCTGTCGCACCTTTTCGTTATTTTAATTTCTATTTCTAGTCT----
TTTTCCGTCTCTCTAGTCTGTC-AGTGTGTATAAAAGCCCATGCAGCTAGGC-AGAGGCTCGTAGGTCAT----------
TCTCTCCCTCCCTCAATTTGGTTTCAAGCATGCGAGGCGCGACAGAAGATACCACCATGACCAACCTTCCGATCAGAGAG
---------CCGCCCAAGACCAAGGTTGGGGGTGACTCCTCCAGCTTGTACGACAAGACGCTGTCGACGGCGTCGAACCT
GGCGAGGCTGCTGCCGACAGGCACCACGACGGCGCTCCAGACGCTGGCGCTGTCCTTCACCAACCACGGCGACTGCCTGT
CGGTGAACCGCTACTTCACCTGGGCGCTCATCCTCTTCCTCGGCGTGCTCTGCGCGCTCCTCTCCTTCACGGACAGCGTC
ACCGACCGGCACGGCCACACCCGCTACGGCTTCGTCCACCCCTGGGGCTTCACGCCCTTCAACTCCGACGACTCGGATGG
GGGCGGGGCCATCCCCACCGGCGACA------GCAGGAGGCGGCGCATGCGGTGGCGGGACTGGCTGCACTCCGTGTTCC
GCTTCGCCGTCTTCATCTCGCTCGCCTTCTGCGACTCCGGCGTGCAGAAGTGCCTGGTCCCGCGCGAGAGCCCCCAGTGG
CGCGAGTTCCTCGGCAACATGCCCCTCGCCTCGGGCTTCCTCGCCAGCTTCGTCTTCATGATCTTCCCCTCCACCAGGCA
CGGCATCGGCGCCGGCCCCGGGGCCCCCGCCGCC------CTCGACGACCTCATCGACACCAATGCCAATGT------CA
ATGCCGCCGTCAAGAGTGGTGAGCTCAAGAAGAGCAAGAGTGCTCCCGCGGCCGCACACACCCGAGTTGCCCCGTCCACC
AGCTATC------AGCTCCACCATCACCATGTCGTCGTCTAGCTCCTCTTGCTTCTCTAGCTACGGAGCAGCAGCTGGAT
GCATGCCTGCATGGTAAGAGA---------------------TCTTTAAATAATACTAAAATCAAGATGGTATGGTTCTA
GTGTGTGCCCCAC------CATGCATGCATGCATCAAACGCGTGATTTCAATTGTCCCTATCATGCATATGAGATTTGCT
TTTCCACCTTTTTGATTCATCTTCTTTTTGGTCCTTG-----CTTTGGTTGTACCATATTAATTATGTGTGATGTGGATG
TTTAGTGTATGTTTTTTTTAGTAATATGTGCGTGTGGCTACCCAATTTAGTTTAATCATCCACTGTGCATGTGCGTGCGT
GCGGAACTGTTGATCCAATTGTAATATCAGACTAACCACCGACATGTCGGGTGTTATTTGCAAAAAGATTATCATAGGCG
TGGTGTTTCTGTGAAAAAATTGTAGGCTAGTGTTTTCTGCTAACCTAGCCTTCAAAATAGTGGTTTTGTGCAATCTACTC
TATATTCTGCAAATGGATCAAAACTTCGTGGTATGATCACAATAGAACCGGATCGTGGATCGTGACATTACAGCGATTTC
TCATGGAACATGAAAATCCTTCAGGTGACCAGGGGTGTGTCATAGCACACGAAACAATTCAGAAACACTAAAAAAATGGA
TTTTTTACAACATCTCTGTAATCATGCATTGGGGTTCACTGTACATGAAAATCTTAACACAATCCCAAAACGTCGAGCTA
TATCTCATAAACAAGTGTCGAGCAATGAAAACAAGGATTTTGACAATGTTGTTGTAACAATGCACATATGATC-GTGAAA
CGTGAAAATGCTCTGGGACCCCAAAAATGGAGTATCGTATAATGCTAGCACTGTGGCACCCGGCAGGAAGAAAACCTAGG
TGGCTCGTACTATTTGGGCCGTGGATAGCCAGGAACATCACGCTGTTACCAAAGAAGGAGGAAGCAATTCGCATCGAGCA
ATTCAGGCCGATATGTTTGCTGAATGTGAGCTTCG
>chr6D_865
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----------------------------------------------------------------TATTTCTAGTCTTTAA
TTTTCTGTCTTTCTAGTGTGTTCGGTGTGTATAAAAGCCCATGCAGGCAGCCAAGACGCTGGTAGGTCATTCTCTCTTTC
TCTCTCTCTCCCTCAATTTGATTTCAAGCATGCGGGGCGCGGCAGCAGAGATCACCATGACCGACCTTCCCATCGGAGAG
---------CCGCCCAAGACCAAGGATGGGGGCAACTCCTCCAGCTTGTACGACAAGACGCTGTCGACGGCGTCGAACCT
GGCGAGGCTGCTGCCGACGGGCACCACGACGGCGTTCCAGACGCTGGCGCCGTCCTTCACCAACCACGGCGAGTGCCTGT
CGGTGAACCGCTACTTCACCTGGGCGCTCATCCTCTTCCTCGGCGTGCTCTGCGCGCTCCTCTCCTTCACGGACAGCGTC
ACGGACCGGCACGGCCACACCCGCTACGGCTTTGTCCACCCGTGGGGCTTCACGCCCTTCAACTCCGACGACCCCGACGG
GGGCGGGGCCATCCCCACCGGCGAGA------GCAGGAGGCGGCGCATGCGGTGGCGGGACTGGCTGCACTCGGTGTTCC
GCTTCATCGTCTTCATCTCGCTCGCCTTCTGCGACTCGGGCGTGCAGAAGTGCCTGGTCCCGCACGAGAGCCGCGGGTGG
CGCGAGTTCCTCGTCAACATGCCGCTCGCCTCGAGCTTCCTCGCCAGCTTCGTCTTCATGATCTTCCCCTCCACCAGGCA
CGGCATCGGCGCCGGCCCCGGGGCCCCCGCCGCCGCTGCCCTCGACAACCTCACCGACACCAATTCCAATGC------CA
ATGCCGCCG---------------TCAAGAAGAGCAAGAGTGCTCCCGCCGCCGCAGACACCCGAGTTGCCCCGTCCACC
AGCTATC------AGCAGCTCG---ACCATCTCGTCGTCTAGCTCCTCTAGCT---------------------------
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>chr6B_889
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------------CTAGTGTGTG-GGTGTGTATAAAAGCCCATGCAGCTAACC-AGACGCTCGTAGGTCATTCTCTCTCTC
TCTCTCCCACCCTCAATTTGATTTCAAGCATACGGGGCGCGGCAGCAGAGACCACCATGACCGACCTTCCCATCGGAGAG
---------CCGCCCAAGACCAAGGTTGAGGGCAACACCTCCAGCTTGTACGACAAGACGCTGTCGACGGCGTCGAACCT
GGCGAGGCTGCTGCCGACGGGCACCACGACGGCGTTCCAGACGCTGGCGCCGTCCTTCACCAACCACGGCGAGTGCCTAT
CGGTGAACCGCTACTTCACCTGGGCGCTCATCCTCTTCCTCGGCGTGCTCTGCGCGCTCCTCTCCTTCACGGACAGTGTC
ACCGACCGGCACGGCCACACCCGCTACGGGTTCGTCCACCCGTGGGGCTTCACGCCCTTCAACTCCGACGACCCCGACGG
GGGCGGGGCCATCCCCACGGGCGAGA------GCAGGAGGCGGCGCATGCGGTGGCGGGACTGGCTGCACTCCGTGTTCC
GCTTCGTCGTCTTCATCTCGCTCGCCTTCTGCGACTCCGGCGTGCAGAAGTGCCTGGTCCCGCGCGAGAGCCGGCAGTGG
CGCGAGTTCCTCGTCAACATGCCGCTCGCCTCGAGCTTCCTCGCCAGCTTCGTCTTCATGATCTTCCCCTCCACCAGGCA
TGGCATCGGCGCCGGCCCCGGGGCCCCCGCCGCCC---CCCTCCACAACCTCACCGACACCAATGCCGATGC------CG
---CCGCCGTCAAGAGTGATGAGCTGAAGAAGAGCAAGAGTGCTCCCGTGGCCGCAGACACCCGAGTTGTCCCGTCCACC
AGCTATG------AGCTCCACCATC-------------------------------------------------------
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-----------------------------------
>chr6D_945
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TCTCTCTCTGCCTCAATTTGGTTTCAAGCATGCGGGGCGCGCCAGCAGAG---------ACCGACCTTCCGGTCGGAGAG
GGAGGGGAGCCGCCCAAGCCTACACGTCGGGGCGGCTCCTCCAGCTTGTACGACAAGACGCTGTCGACGGCGTCGAACCT
GGCGAGGCTGCTGCCGACGGGCACCACGACGGCGTTCCAGACGCTGGCGCCGTCCTTCACCAACCACGGCGAGTGCCTGT
CGGTGAACCGCTACTTCACCTGGGCGCTCATCCTCTTCCTCGGCGTGCTCTGCGCGCTCCTCTCCTTCACGGACAGCGTC
ACCGACCGGCACGGCCACACCCGCTACGGCTTCGTCCACCCGTGGGGCTTCACGCCCTTCAACTCCGACGACCCCGACGG
GGGCGGGGCCATCCCCATCGGCGAGA------GCAGGAGGCGGCGCATGCGGTGGCGGGACTGGCTGCACTCGGTGTTCC
GCTTCATCGTCTTCATCTCGCTCGCCTTCTGCGACTCGGGCGTGCAGAAGTGCCTGGTCCCGCGCGAGAGCCGCCAATGG
CGCGAGTTCCTCGTCAACATGCCGCTCGCCTCCGGCTTCCTCGCCAGCTTCGTCTTCATGATCTTCCCCTCCACCAGGCA
CGGCATCGGCGCCGGCCCCG---CCGCCGCCGCC------CTCGACAACCTCACCGACACCAATGCCAATGCCAATGACA
ATGCCGCCG---------------TCAAGAAGAGCAAGAGTGCTCCCGCCGCCGCAGACACCCGAGTGGCCCCGTCCACC
AGCTATC------AGCTCGGCCAT---------GTCGTCTAGCTCCTCTTGATATGGATCGCCG---------------T
GCATGCATGCATGGTAAGAGCAACGTGAGTGAGTGGTCGTCTTCTTTAAATAAACGGAATCAAAT---------------
-TGTGTGCCTCACCCCATGCATGCATGCATGCATCAAACGTGTGC-TTGAATTGTTCCTATCACG----TGAGATTTGCT
T--------------TTCATCTTCTTTTTGGTCCTTCCCTTCCTTTGGTTGAACCGTATT-ATTATGTGTGATGTGGGTG
TTGAGTGTACGTTTTTCTTTTGCTAGTATATGCATGGCTACCAATTTTACTTTAACCATCCTCTGTG--TGTGTGTGTGT
ATGGAACTGTTGATCCAATTTTTATATCCGAACTTCCCATAATATAGTCAAATTCATAAAAAAAATACTTTTCCAAATAT
ATTTGTGTGTGTGATTTTCACATTTCTTTCATATTCTATATGTTGTTTTGGTGGCAAGCAAGGTTGTCAAGATCA-----
TATATTCTGCAG-TGGATCAGAACTTTGTGGTAAGGTCGCAATAGAACA--------GATCATGGCATTATAGTGACTTT
TCACAAAACATGAAAATCTTTCAGGTAACCA------------AGCACACGAAACAAAACAGAAAGACAGTAAACATGGA
TTTTTCACAACATCTCTGTAATCATGCATTGGGGTTCACAGAACATGAAAACCTTAACAGGATCCCAAAACGTTGGGCTA
TAACTCATAAACAAGCGTGGAGCGGTGAAAACAAGGATTTTGACCATGTTGTTGTAACAATGCACCTAGGATTTGTGAAA
CGTGAAAATGCTCTTGGGAC------------------------------------------------------------
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>chr5D_1054
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--------------------------------------CTCCAGCTTGTACGACAAGACGCTGTCGACGGCGTCGAACCT
GGCGAGGCTGCTGCCGACGGGCACCACGACAGCGTTCCAGACGCTGGCGCCGTCCTTCACCAACCACGGCGAGTGCCTGC
CCGTCAACCGCTACTTCACCTGGGCGCTCATCTTCTTCCTCGGCGTGCTCTGCGCGCTCATCTCCTTCACGGACAGCGTC
ACCGACCGGCACGGCAACACCCGCTACGGCTTCGTCCACCCCTGTGGCTTCACGCCCTTCAACTCCGT---CCCTCACGG
TGACGGGACCGTCCCCATCGACGAGAGGGAGAGCAAGAGGCGGCGCATGCGGGGGCGGGACTGGCTGCACTCCGTGTTCC
GCTTCGTCGTCTTCGTCTCGCTCGCCTTCTGCGACTCGGGCGTGCAGAAGTGCCTCGTCCCGCGCGAGAGCCAACAGTGG
CGCGAGTTCCTCGTCAACATGCCGCTCGCATCGGGCTTCCTCGCCAGCTTCGTCTTCATGATCTTCCCCTCCAGCAGGCA
CGGCATCGGCGCCGGCCCCGGGGCCCCCGCCGCC------CTCGACAACCTCACCGACACCAATGCCGATGC------CG
ATGCCGCCGTCAAGAGTGATCCGCCCAAGAACAGCAAGAGTGCCCCCGCCGCCGCAGACACCCGAGTTGCCCCGTCCACC
AGCTAT--------------------------------------------------------------------------
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>chr5A_1054
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--------------------------------------CTCCAGCTTGTACGACAAGACGCTGTCGACGGCGTCGAACCT
GGCGAGGCTGCTGCCGACGGGCACCACGACAGCGTTCCAGACGCTGGCGCCGTCCTTCACCAACCACGGCGAGTGCCTGC
CCGTCAACCGCTACTTCACCTGGGCGCTCATCTTCTTCCTCGGCGTGCTCTGCGCGCTCATCTCCTTCACGGACAGCGTC
ACCGACCGGCACGGTAACACCCGCTACGGCTTCGTCCACCCCTGTGGCTTCACGCCCTTCAACTCCGG---CCCTGGCGG
CGACGGGACAGTCCCCATCGACGACAGGGAGAGCAAGAGGCGGCGCATGCGGGGGCGGGACTGGCTGCACTCCGTGTTCC
GCTTCGTCGTCTTCGTCTCGCTCGCCTTCTGCGACTCCGGCGTGCAGAAGTGCCTCGTCCCGCGCGAGAGCCAACAGTGG
CGCGAGTTCCTCGTCAACATGCCGCTCGCATCGGGCTTCCTCGCCAGCTTCGTCTTCATGATCTTCCCCTCCAGCAGGCA
CGGCATCGGCGCCGGCCCCGGGGCCCCCGCCGCG------CTCGACGACCTCACCGACACCAATGCCGACGC------CG
---CCG---TCAAGAGTGATCCGTCAAAGAACAGCAAGACTGCTCCCGCGGCCGCAGACACCCGAGTTGCCCCCTCCACC
AGCTATGACTGTGAGCTCCACCAT---------GCCGTCTAGCTCCTCT-------------------------------
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-----------------------------------
>SNPs
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS----------------
-----S----S------S---S-S--------------------------S-----S-----------------------
----------------------------------S------S---S---S------------S-----------S-----
--------------------------------S-----------------------------------------------
------------------S---------------S---------------S---------------------S-------
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------------------------------------------------------------------------S-S--S--
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------S-----------------------------------------------------------------S-------
-------------S---------S--------------------------------------------------------
-----------------------------------------------------S-----------------S--------
------------------S-------------------------------------S-----------------------
------------------------------S----------------------SSSSSSSSSSSSSSSSSSSSSSSSSS-
------S-------------S--------------------------------SSSS--SSSS-SSSSSSSSSSSSSSSS
S--------S------------------------------S---SS--S------S-------S-SSSS-----------
-SSSSSSSSSSSSSS---------------------S--------------S---S----S----------------S--
--S------S------S--SSSSSSS-S-SS-SS--------S-S----S-----S-----S-----SS----S---S--
SS------------------S-S-----S--SSSS--SSSS-S--SSSSSSSS-S--SSSS----SSS--S--SS-SSSS
SSS---S-S-----SSSSSSSS-SSSS-SSSSS--SSSSS-SSSS-SSSSS-SSS--SSSS----S-SSSS-SSSSSSSS
-----------SS-------S-----S------S-S--S---------SSSSSSSSS----S--S-----S--S--S--S
---SSS------------S-------S----SSSSSSSSSSSS--------------SS------S--SSS---S-----
-----S---------------------------------S-S---------S-------SS------------S-S----
--S------------S--S----SS-------------------S--------------------S--S---S-------
--------------S--SS-SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
>forward_759
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-------------------TGCTGGACAGACCACATCAC-----------------------------------------
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>reverse_2369
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------------------------------------------------CGGATCGTGGATCGTGACAT------------
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-----------------------------------
