>input_sequence_69785
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-----------------------------ATGGAAAATGGATTTCCTGGCGAAGTTCTGAAGGCTGTTTTTCCTCTACTG
GATGGTAAAGACTTAGTCTTTTGCATGCTTGTATGCCGCCAATGGTGCGAAATTGCAAAGGATGATTACTTCTGGAAATG
CATCTGCTCACGGAAATGGCCTTCCATCTGCAAGCAGCCTCCTTCTGACACAAACTTCCAAAAGCTCTATTTAACGTTCT
CCAAGCCACGGAAGACGGTGCACCTTCCTGTACCTAAGCTCACTTTTGAGGATCTGGTGTTTTACATTGACATGTGGCTT
GAGGGATCACTAATCTTCTCTCAAGCAGTTTCAGGCTGCATTCTTCGAGCAGGTTTACAGAACACACCTGGCGGCATACC
AGATGTACTTGTTGCACATCTGAATGCCGCAGACTGCATTTTGATGATGGAAGTCAAACCCAAGCTGACAGTCCCTATGG
GGCCAGCCATCACCGTGTCTGTTCTTGCCCACCGCAAGGACACCAACAAGATGACTTGCATAATCAATACGTCGAGTTTT
GATTACATTGACAGCAATGCAGCACGGGCATTGGCATATGAATATCTCAGGTTTTCACCCAGACACCCTTTCATATCAGA
CATCCGGGCTTGGATGTCGTTGCTTTTCCTGTATAAAGGAACAAACTCTATAGAGGTATTTGGTATTGAACTAGATTTTT
GTGATGCGGCAAGGTCCGAGCCTGAGATCTTGTGGCTCTTAGACATGCTTGATTGGAAATAG------------------
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>chr2B_1_TraesCS2B01G345700
AAGGAGCAATCATACGTAGGTTTCATTTTTCATGTTTTGGGATTATATATCAGTTTAAGCATAAACTTGTACAGCTAGAA
CTATTATGCTCATGTCGTGTA---------TACAGTACTAGTTACAATATTTTCCATTGGCTTTCACTCAAGAAAGATTG
GAGTGGT-AACGATAAATGAATGCGTTGGAGATCAACAACATGTACATGATGTATTATCAATAAAGAGTTGGGGTGTCAT
AGTTCGGTTTGTGCTTTTGAGTAAATATGCTCTTATGCCAGACTGCAGATCAACAC------------------------
----------TGAAAATGGGATATATTTAAAAATATTATTCTAGGCCTAAAAAGGGAACATTT-----------------
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---TGTTTTGTGAGGATGTGCTTTCCTGAACTCCAGAGGTTTGGTGTTCCTTAATAAGTATATTGATCAACAACACAAAT
GGGACCATGTTTTGCTGTGAAGTTGAACACCTACCCTTCAAGGCACCATAGTGAATGCTTATCGTGGTATTGTGTCAAAT
CAGTTTGATCATAGCAACTACTCGTGGTAATCGGTTGGATCATTTGGTTGTGACTCAGAAACAAATATAGTTTCACTTTC
CATTACTGCCAGTATTATTTGAAAGCCTACTT----GTTAATCAAATTGATCATTTATTTCTTCTATCATTCTTGTGTAG
TTCACACCCCCAACTCCAACAGACATCACATTTCCAAATTATTATTAATCTGGAAGATGGAAGCTATTTTTTTTATGGAC
TA------------------------------------------------------------------------------
--GTATGTTCTAGCAATAGCCATTAGTCCATGTTCTGCTTAGTCTAGGTATACTCTTCTACGTTTATCATCCTTGCAGAT
TCAGATTATAGTGAATTAAAAGATAGCAGTAGTTGTGCTACTTCAGTTTTTGACTGGGCATGAATTGATCAGTATTTGTT
TAACCATCTCTTATTAATAGACACTTCTGGTTCGCTCTTCGGTTTGTAGCTGAAGTCTCCATCCTAGAG-GGTAGAGGCA
TTCCATTTCCTTCAGTTCAGTGATTGAGAATGGAAAATGGATTTCCTGGCGAAGTTCTGAAGGCTGTTTTTCCTCTACTG
GATGGTAAAGACTTAGTCTTTTGCATGCTTGTATGCCGCCAATGGTGCGAAATTGCAAAGGATGATTACTTCTGGAAATG
CATCTGCTCACGGAAATGGCCTTCCATCTGCAAGCAGCCTCCTTCTGACACAAACTTCCAAAAGCTCTATTTAACGTTCT
CCAAGCCACGGAAGACGGTGCACCTTCCTGTACCTAAGCTCACTTTTGAGGATCTGGTGTTTTACATTGACATGTGGCTT
GAGGGATCACTAATCTTCTCTCAAGCAGTTTCAGGCTGCATTCTTCGAGCAGGTTTACAGAACACACCTGGCGGCATACC
AGATGTACTTGTTGCACATCTGAATGCCGCAGACTGCATTTTGATGATGGAAGTCAAACCCAAGCTGACAGTCCCTATGG
GGCCAGCCATCACCGTGTCTGTTCTTGCCCACCGCAAGGACACCAACAAGATGACTTGCATAATCAATACGTCGAGTTTT
GATTACATTGACAGCAATGCAGCACGGGCATTGGCATATGAATATCTCAGGTTTTCACCCAGACACCCTTTCATATCAGA
CATCCGGGCTTGGATGTCGTTGCTTTTCCTGTATAAAGGAACAAACTCTATAGAGGTATTTGGTATTGAACTAGATTTTT
GTGATGCGGCAAGGTCCGAGCCTGAGATCTTGTGGCTCTTAGACATGCTTGATTGGAAATAGAAGCTACTCTTTAGTTGT
GA-TTTGAGCCTTTGAGGTATGTAAAGAATGTTCATCATATGTTGATCATCTACTGTTGTAGTACTGACATATATGCTTT
AAGATGCTGGAATAAAATGGCGATGTGCGCCCATTGGTTCTCTATACCGTTCATGATTTGGTATTGACTGATTTAGCTAG
CACGGTGTTGAAGACTGCCTTTTGGCCCATAGTAGATTTGGTTTCTATGGATAATTGCTTGTGCTAAATCAACAGCA-TT
AATATGGGTCGAAGGGAGTGTATTATATTAGCCCGCTATTGTGTG-ACCATCATTTGTTCATTGGTGCATTCAAATTTTA
--GCGAGTTTTTTAGCTTGGCATTTCATTGTTGTTGTTTTTTGACTTTTGCAAGGATTTCTAGCTTAGTATATT-GCTCT
TTCTCATGAAAGTTGGTGGAGAGGGGAGGGGCGGGAGCGTTAGGAGTGTTGTTCCCTTTCTAGGGAGCTTACAAAAACTC
TAGCAGAGTTGCCGTATGTGCACTCTTTAAAACACATATGAAGCGTGCTCCATCAATTTTGGGAGTGTGCGAGTC-GATG
TACAAAATCAGAGTCACAATGTCTTGGCCTTCAAAATGTT-TTTTCTCTCTTCTATTCGTTCACACATTTGGATTAAACG
TTTCATATCCTTTCGAAAGCATCATGCACACATTTTTCAAACAAAATTGCATGAATAAAAGACAAAACAATAAGCACATT
CAACCGACATGTACAAATCACATGTCGCCGACGACTCC---ATTCTTTGCACCGTCCTTTCCTCCGGTATGTGCATAGTC
ACCTC---------------------------------------------------------------------------
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-----------CTCCGGTGTGCTCAACGCTCCATGCCATCCTAGGACGCATGATCGCCGTTCGCGTGAACTCCCAAAATG
ATATTGACATTAGACCCATGCCATTGGGCTCCAATATCAATAGTTTCTCCCAGGCTATCTTGTTTTGCATTAACCGGTCC
TCGTCAAGTTTAAGCCTACGCGCCTCCATCTCTTCCTCG
>chr2A_3
GGGGCAATCAATT--GTAGGTTTCATTTTTCATGTTTTGGGATCATATATCAGTTT-AGCATAAACTTGTACAGCTAG--
-----------------TATATATAGTACGTACAGTACTAGTTACAATACTTTCCATTGGCTTTCACTCAAGAAAGATTG
GAGTGGTTAACGGTAAATGAATGCGTTGGAGATCAACAACATGTACATGATGCATTATCAACAAAGAGTTGGGGTGTCAT
GGTTCGGTTTGTGCTTTTGAGTAAACTAGATGATACCCCGCACGTTGTTGCGGGAATATTATGCAACACATTTCAGTGTG
ATTCATTGTATGAAACATGAATATTTGAAGCAATAATATAAAAGGCTAAAACTAAAAATACATATAATTTATTATGTTTG
ATTACTATATAAATGTAAAATGTATAAATAGCATAATAGAATGAAAATTCTCATGTCCGTTTGCATGTTGAGATGTGTCT
TTTTTCATGCATATTTCACGATCAAGTGGCATGCTTGCATGTTAAAAGACATATGGTAGTGGGGGTGGACCTTTTCTCAT
GCATGTTGTGTGATGATGTGGCATGCTTGCATGTTGAGAGAAATAGTTAGTGGGGGCTAGCTATTT--------------
----------------------------------------AGACACCATGGTGAATGCTTATCGTGGTATTGTGTCAAAT
CAGTTTGATCATAGCAACTACTCGTGGTAATCGGTTGGATCATTTGTTTGTGACTCAGAAACAAATATAG------TTTC
CATTACTGCCGGTATTATTTGAAAG----CTT----GTTAATCAAATTGATCATTTATTTCTTCTATCATTCTTGTGTAG
TTCACACACCCAACTCCAACAGACATCACATTTCCAAATTATTACTGATCTGGAAGATGGAAGCTATTTTCTTTATGGAC
TACCCCTTCCGTCCCATAATGTAAGATCGTTTTGCAAGCTGTTTTAGCTTGCAAAACGATCTTATATTGTGGGACGGAGG
GAGTATGTTCTAGCAATAGCCATTGGTCCATGTTCTGCTTAGTCTAGGTATACTCTTCTACGTTTATCATCCATGCAGAT
TCAGATTATAGTGAATTAAAAGATAGCAGTAGTCTTGCTACTTCAGTTTTTGACTGGGCATGAATTGATCAGTATTTGTT
TAACCATCTCTTATTAATAGGCACTTCCGGTTCACTTTTTGGTTTGTAGCTGAAGCCTCGATCCTAGAG-GGTAGAGGCA
TTCCATTTCCTTCAGTTCAGTGATTGAGAATGGAAAATGGATTTCCTGGTGAAGTTCTGAAGGCTGTTTTCCCTCTACTG
GATGGTAAAGACTTAGTCTTTTGCATGCTTGTATGCCGCCAATGGTGCGAAATTGCAAAGGATGATTACTTCTGGAAATG
CATCTGCTCACGGAAATGGCCTTCCATCTGCAAACAGCCTCCTTCTGACACAAACTTCCAAAAGCTCTATTTAACGTTCT
CCAAGCCACGGAAGACAGTGCACCTTCCTGTACCTAAGCTCACTTTTGAGGATCTGGTGTTTTACATTGACATGTGGCTT
GAGGGATCACTAATCTTCTCTCAAGCAGTTTCAGGCTGCATTCTTCGAGCAGGTTTACAGAACACACCTGGCGGCATACC
AGATGTACTTGTTGCACATCTGAATGCCGCAGACTGCATTTTGATGATGGAAGTCAAACCCAAGCTGACAGTCCCTATGG
GGCCAGCCATCACCGTGTCTGTTCTTGCCCACCGCAAGGACACCAACAAGATGACTTGCATAATCAACACGTCGAGTTTT
GATTACATTGACAGCAATGCAGCACGGGCGTTGGCATATGAATATCTCAGGTTTTCGCCCAGACACCCTTTCATATCAGA
CATCCGGGCCTGGATGTCCTTGCTTTTCCTGTATAAAGGAACAAACTCTATAGAGGTATTTGGTATTGAACTAGATTTTT
GTGATGCGGCAAGGTCCGAGCCTGAGATCTTGTGGCTCTTAGACATGCTTGATTGGAAATAGAAGCTACTCTTTAGTTGT
GA-TT-GAGCCTTTGAGGCATGTAAAGAATGTTCATGATATGTTGATCATCTACTGTTGTAGTACTGAAATATATGCTTT
AAGATGTTGGAATAAAATGGCGATGTGCGCCCATTTGTTTTCTATACCGTTCATGATTTGGTATTGACTGATTTAGCCAG
CACGGCG-TGAAGACTGCCTTTTGGCCCATAGTAGATTTGGTTTATATAGATAATTGCTTGTGCTAAATCAACAACAATT
AATATGGGTCGGAGGGAGTATATTATATTAGCCCGCTATTGTGTAACCAAACAATTCTTCATTGGTGCATTCAAATTTTA
--G--AGTTTTTTAGCCTGGCACTTCATTGTTGTTGTTTTTTGACTTTTGCAAGGATTTCTAGCTTAGTATATTTG----
--------------------------AGGAGCAGGAGTGTTGC---------TCCCTTTCTAGGGAGCTTACAAAAACTC
TAGCAGAGTTGCCGTATGTGCACTCTTTAAAACACATATGAAGCGTGCTCTATCAAATTTGGGAGTGTGCGAGAC-GATG
TACAAAATCAGAGTCACAATGTCTTGGCCTTCAAAATGTT-TTTTCTCTCCTT--TTCGTTCACACATTTGGATTAAACG
TTTCATATCATTTCAAAAGCATCATGCACACATTTTTCAAACAAAATTGCATGAATAAAATACAAAACATTATGCACATT
CAACCAGCATGTACAAATCACATGTCGCCGACGACTCCTCCATTGTTTGCACCGTCTTTTCCTCCGGTATGTTCATAGTC
ACCTCCTCCGGTTTGGCAAAATTGACAAATTTGACCTATGGACGAAATCAAATCACAAAATAAACTACCCATGAAACTAT
TTCACGCTGCTGACCTTTTTATGTGACGCCCGACATAAAGACGTCACACTACACTGTGCAACGCCTCACAGATATGCGCT
ACACACCTGGGCAGCGTCGCATCCTTGTGATCCGAAAATTATTAAGTCAGTGTGCAGCGCCTGAGAGATAGGTGCCACAC
TATACAGTGTAGCGCCTAGCTTCTAGGCGTTCCACTAGTGGTTGCTTTATTTTGTAGTGCAATCACTAGTGCAGCGCCTG
AGAGCTAGGCGCCACACTATACAGTACAACGCCTAGCTCTTAGGCTCTGCACAATGACTTGGCAATTTTTAGGCAGTCTG
GGGTGCAACGCTGGCTAGGCGTATAGCGCCTATCTGTGAGGCGTTGCACAGTGTAGTGTGACGCCTTCGTGTCGGGCGTC
ACACAAAAAGGTCAGCCGTGTGAAATAGTTTCACGGGCAGTTCATTTTATAATTTGATTTCGTCCACAGGTCAAATTTGT
CAAATTTGCCCCTCCGGTATGCTCAACGCTCCATGTCATCCTAGGACGCATGATCGCCGCTCGCGTGAACTCCCAAAATG
ATATTGACATTAGATCCATGGTATTGGACTCCAATATCAACAGTTTCTTCCTCGCTATCTTGCTTTGCATTAACCGGTCT
TCGTCAAGTTTAAGCCTACGTGCCTCCATCTCTTCCTCG
>chr2D_6
---GCAATCAATT--GTAGGTTTCATTTTTCATGTTTTGCGATTATATATCAGTTT-AGCATAAACTTGTACAGCTAGAA
TTATTGTGCTCATGTCGTATATATAGTACGTACAGTACTGGTTACAATATTTTCGATTGGCTTTCACTCAAGAAAGATTG
GAGTGGTTAACGATAAATGAATGCGTTGGAGATCAACAACATGTACGTGATGCATTATCAATAAAGAGTTGGGGTGTCAT
AGTTCGGTTTGTGCTTTTGAGTAAATATGTTCTTATGCCAGACTGCAGATCAAAGC------------------------
----------TGAAAATGGGATATATTTGAAATAATTATTCTATGCCTAAAAAGGGAACGTTT-----------------
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---TGTTTCGTGAGAATGTGCTTTCTTGAACTCCAGAGGTTTGGTGTTCCTTAATAAGTATATTGATCAACAACACAAAT
AGGACCATGTTTTGCTGTGAAGTTGAACATCTACCCTTGAAGGCACCATAGTCAATGCTTATTGTGGTATTGTGTCAAAT
CAGTTTGATCATAGCAACTACTCGTGGTAATCGGTTGGATCATTTGGTTGTGACTCAGAAACAAATGTAG------TTTC
CATTACTGCCGGTATTATTTGAAAG----CTTATTTGTTAATCAAATTGATCATTTATTTCGTCTATCATTCTTGTGTAG
TTCACACTCCCAACTACAACAGACATCACATTTCCAAATTATTATTGATCTGGAAGATGGAAGCTATTTT-TTTATGGAC
TACCCCCTCCGTCCCATAATGTAAGATCGTTTTGCAAGCTGTTTTAGCTTGCAAAACGATCTTATATTGTGGGATGGATG
GAGTATGTTCTAGCAATAGCCA----------------TTAGTCTAGGTATACTCTTCTACGTTTATCATCCTTGCAGAT
TCAGATTATAGTGAATTAAA-GATAGCAGTAGTCGTGCTACTTGAGTTTTTGACTGGGCATGAATTGATCAGTATTTGTT
TAACCATCTCTTATTAATAGGCACTTCTGGTTCACTCTTTGGTTTCTAGCTGAAGTC-CCATCCTAGAGGGGTAGAGGCA
TTCCATTTCCTTCAGTTCAGTGATTGAGAATGGAAAATGGATTTCCTGGCGAAGTTCTGAAGGCTGTTTTCCCTCTACTG
GATGGTAAAGACTTGGTCTTTTGCATGCTTGTATGCCGCCAATGGTGCGAAATTGCAAAGGATGATTACTTCTGGAAATG
CATCTGCTCACGGAAATGGCCTTCCATCTGCAAGCAGCCTCCTTCTGACACAAACTTCCAAAAGCTCTATTTAACATTCT
CCAAGCCACGGAAGACAGTACACCTTCCTGTACCTAAGCTCACTTTTGAGGATCTGGTGTTTTACATTGACATGTGGCTT
GAGGGATCACTAATCTTCTCTCAAGCAGTTTCAGGCTGCATCCTTCGAGCAGGTTTACAGAACACACCTGGCGGCATACC
AGATGTACTTGTTGCACATCTGAATGCCGCAGACTGCATTTTGATGATGGAAGTCAAACCCAAGCTGACAGTCCCTATGG
GGCCAGCCATCACCGTGTCTGTTCTTGCCCACCGCAAGGACACCAACAAGATGACTTGCATAATCAATACGTCGAGTTTT
GATTACATTGACAGCAATGCAGCACGGGCGTTGGCATATGAATATCTCAGGTTTTCGCCCAGACACCCTTTCATATCAGA
CATCCGGGCCTGGATGTCCTTGCTTTTCCTGTATAAAGGAACAAACTCTATAGAGGTATTTGGTATTGAACTAGATTTTT
GTGATGCGGCAAGGTCCGAGCCTGAGATCTTGTGGCTCTTAGACATGCTTGATTGGAAATAGAAGCTACTCTTTAGTTGT
GATTT-GAGCCTTTGAGGCATGTAAAGAATGTTCATGATATGTTGATCATCTACTGTTGTATTACTGAAATATATGCTTT
AAGATGTTGGAATAAAATGGCGATGTGAGCCCATTGATTTTCTATACCGTTCATGATTTGGTATCGACTGATTTAGCCAG
CAAGGTGTTGAAGACTGCCTTTTGGCCCATAGTAGATTTGGTTTCTATGGATAATTGCTTGTGCTAAATCAACAACAATT
AATATGGATCGGAGGGAGTATATTATATTAGCCTGCTATTGTGTG-CCCATCATTTGTTCATTGGTGCATTCAAATTTTC
GCG--AGTTTTTTAGCCTGGCATTTCATTGTTGTTGTTTTTTGACTTTGGCAAGGATTTCTAGCTTAGTATATTTGCTAT
TTCTCGTGAAATTTGGTGGAGAGGGGAGGAGCGGGAGCGTTAGGAGTGTTGTTCCCTTTCTAGGGAGCTTACAAAAACTC
TAGCAGAGTTGC---------ACTCTTCAAAACACTC------------CCATCAAATTTGGGAGTGTGCGAGACAGATG
TACAAAATCAGAGTCACAATGTCTTGGCCTACAAAATGGTCTTTTCTCTTCTT--TTCGTTCACACATTTGGATTAAACG
TTTCATATCATTTCGAAAGCATCATGCACACAATTTTTAAACAAAATTGCATGAATAGAAGACAAAACATTATGCACATT
CAA----CATGTACAAATCACATATCCCCGACGACTCCCCCATTCTTTGCACCGTCCTTTCC-CCGGTATGTGCATAGT-
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>SNPs
SS--SSSSSSSS-SS-----------------------------------------S-----------------------
S----S------------S-------------------------------------------------------------
----------------------------------------------------S---------------------------
-----------------------------S-----------------------S--------------------------
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S----------------------------S--------S-----------------------------------------
----------------------------------------------------------------------SSSSSS----
----------S--------------SSSS---------------------------------------------------
-------S--------------------------------------S-----------------------S---------
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------------------------S-------------------------------------------------------
---------------------------------S----------------------------------------------
--------------------S------------S-----S----------------------------------------
----------------------------------------------------------------------S---------
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----------------S---------------------------------------------------------------
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-----------------------------S--------------------------S-----------------------
---------S--------S-------------------------------------------------------------
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-----S------------S-----------------S-------------------------------S-----------
------S--------------------------------S-------------------------------------S--
--------------------------------------------------------------------------S-----
-----------S-------S--------------------------S---------------------------------
---SS-----------S-------------------------------------------------------------S-
-----S-----S-----------------S--------------------------------------------------
--------------------------------------------------------S----------------S------
--------------------------------------------------S-SSS-------------------------
---------S-----------------------------------------------------------S--S-------
-----SS-------------------------------------------------------------------------
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------------------S----------------S-----------------------S--------------------
--------------S-----SS-----S------------S-------S--SS---------S----------------S
--------------------S------------------
>forward_294
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----------------------------------ATGCCAGACTGCAGATCAAC--------------------------
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>reverse_1537
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----------------GGTGCACCTTCCTGTACCTA--------------------------------------------
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>forward_1240
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-------------------GACACTTCTGGTTCGCTCTTC----------------------------------------
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>reverse_2617
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--------------------------------------------------------TTTTGGGAGTGTGCGAGTCG----
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