>input_sequence_69784
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---------------------------------------------------ATGGAAAATGGATTTCCTGGTGAAGTTCT
GAAGGCTGTTTTCCCTCTACTGGATGGTAAAGACTTAGTCTTTTGCATGCTTGTATGCCGCCAATGGTGCGAAATTGCAA
AGGATGATTACTTCTGGAAATGCATCTGCTCACGGAAATGGCCTTCCATCTGCAAACAGCCTCCTTCTGACACAAACTTC
CAAAAGCTCTATTTAACGTTCTCCAAGCCACGGAAGACAGTGCACCTTCCTGTACCTAAGCTCACTTTTGAGGATCTGGT
GTTTTACATTGACATGTGGCTTGAGGGATCACTAATCTTCTCTCAAGCAGTTTCAGGCTGCATTCTTCGAGCAGGTTTAC
AGAACACACCTGGCGGCATACCAGATGTACTTGTTGCACATCTGAATGCCGCAGACTGCATTTTGATGATGGAAGTCAAA
CCCAAGCTGACAGTCCCTATGGGGCCAGCCATCACCGTGTCTGTTCTTGCCCACCGCAAGGACACCAACAAGATGACTTG
CATAATCAACACGTCGAGTTTTGATTACATTGACAGCAATGCAGCACGGGCGTTGGCATATGAATATCTCAGGTTTTCGC
CCAGACACCCTTTCATATCAGACATCCGGGCCTGGATGTCCTTGCTTTTCCTGTATAAAGGAACAAACTCTATAGAGGTA
TTTGGTATTGAACTAGATTTTTGTGATGCGGCAAGGTCCGAGCCTGAGATCTTGTGGCTCTTAGACATGCTTGATTGGAA
ATAG----------------------------------------------------------------------------
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>chr2A_1_TraesCS2A01G336200
GGTTCGGTTTGTGCTTTTGAGTAAACTAGATGATACCCCGCACGTTGTTGCGGGAATATTATGCAACACATTTCAGTGTG
ATTCATTGTATGAAACATGAATATTTGAAGCAATAATATAAAAGGCTAAAACTAAAAATACATATAATTTATTATGTTTG
ATTACTATATAAATGTAAAATGTATAAATAGCATAATAGAATGAAAATTCTCATGTCCGTTTGCATGTTGAGATGTGTCT
TTTTTCATGCATATTTCACGATCAAGTGGCATGCTTGCATGTTAAAAGACATATGGTAGTGGGGGTGGACCTTTTCTCAT
GCATGTTGTGTGATGATGTGGCATGCTTGCATGTTGAGAGAAATAGTTAGTGGGGGCTAGCTATTTAGACACCATGGTGA
ATGCTTATCGTGGTATTGTGTCAAATCAGTTTGATCATAGCAACTACTCGTGGTAATCGGTTGGATCATTTGTTTGTGAC
TCAGAAACAAATATAG------TTTCCATTACTGCCGGTATTATTTGAAAGCTT----GTTAATCAAATTGATCATTTAT
TTCTTCTATCATTCTTGTGTAGTTCACACACCCAACTCCAACAGACATCACATTTCCAAATTATTACTGATCTGGAAGAT
GGAAGCTATTTTCTTTATGGACTACCCCTTCCGTCCCATAATGTAAGATCGTTTTGCAAGCTGTTTTAGCTTGCAAAACG
ATCTTATATTGTGGGACGGAGGGAGTATGTTCTAGCAATAGCCATTGGTCCATGTTCTGCTTAGTCTAGGTATACTCTTC
TACGTTTATCATCCATGCAGATTCAGATTATAGTGAATTAAAAGATAGCAGTAGTCTTGCTACTTCAGTTTTTGACTGGG
CATGAATTGATCAGTATTTGTTTAACCATCTCTTATTAATAGGCACTTCCGGTTCACTTTTTGGTTTGTAGCTGAAGCCT
CGATCCTAGAG-GGTAGAGGCATTCCATTTCCTTCAGTTCAGTGATTGAGAATGGAAAATGGATTTCCTGGTGAAGTTCT
GAAGGCTGTTTTCCCTCTACTGGATGGTAAAGACTTAGTCTTTTGCATGCTTGTATGCCGCCAATGGTGCGAAATTGCAA
AGGATGATTACTTCTGGAAATGCATCTGCTCACGGAAATGGCCTTCCATCTGCAAACAGCCTCCTTCTGACACAAACTTC
CAAAAGCTCTATTTAACGTTCTCCAAGCCACGGAAGACAGTGCACCTTCCTGTACCTAAGCTCACTTTTGAGGATCTGGT
GTTTTACATTGACATGTGGCTTGAGGGATCACTAATCTTCTCTCAAGCAGTTTCAGGCTGCATTCTTCGAGCAGGTTTAC
AGAACACACCTGGCGGCATACCAGATGTACTTGTTGCACATCTGAATGCCGCAGACTGCATTTTGATGATGGAAGTCAAA
CCCAAGCTGACAGTCCCTATGGGGCCAGCCATCACCGTGTCTGTTCTTGCCCACCGCAAGGACACCAACAAGATGACTTG
CATAATCAACACGTCGAGTTTTGATTACATTGACAGCAATGCAGCACGGGCGTTGGCATATGAATATCTCAGGTTTTCGC
CCAGACACCCTTTCATATCAGACATCCGGGCCTGGATGTCCTTGCTTTTCCTGTATAAAGGAACAAACTCTATAGAGGTA
TTTGGTATTGAACTAGATTTTTGTGATGCGGCAAGGTCCGAGCCTGAGATCTTGTGGCTCTTAGACATGCTTGATTGGAA
ATAGAAGCTACTCTTTAGTTGTGA-TTGAGCCTTTGAGGCATGTAAAGAATGTTCATGATATGTTGATCATCTACTGTTG
TAGTACTGAAATATATGCTTTAAGATGTTGGAATAAAATGGCGATGTGCGCCCATTTGTTTTCTATACCGTTCATGATTT
GGTATTGACTGATTTAGCCAGCACGGCG-TGAAGACTGCCTTTTGGCCCATAGTAGATTTGGTTTATATAGATAATTGCT
TGTGCTAAATCAACAACAATTAATATGGGTCGGAGGGAGTATATTATATTAGCCCGCTATTGTGTAACCAAACAATTCTT
CATTGGTGCATTCAAATTTTA--GAGTTTTTTAGCCTGGCACTTCATTGTTGTTGTTTTTTGACTTTTGCAAGGATTTCT
AGCTTAGTATATTTG------------------------------AGGAGCAGGAGTGTTGC---------TCCCTTTCT
AGGGAGCTTACAAAAACTCTAGCAGAGTTGCCGTATGTGCACTCTTTAAAACACATATGAAGCGTGCTCTATCAAATTTG
GGAGTGTGCGAGAC-GATGTACAAAATCAGAGTCACAATGTCTTGGCCTTCAAAATGTT-TTT--TCTCTCCTTTTCGTT
CACACATTTGGATTAAACGTTTCATATCATTTCAAAAGCATCATGCACACATTTTTCAAACAAAATTGCATGAATAAAAT
ACAAAACATTATGCACATTCA----ACCAGCATGTACAAATCACATGTCGCCGACGACTCCTCCATTGTTTGCACCGTCT
TTTCCTCCGGTATGTTCATAGTCACCTCCTCCGGTTTGGCAAAATTGACAAATTTGACCTATGGACGAAATCAAATCACA
AAATAAACTACCCATGAAACTATTTCACGCTGCTGACCTTTTTATGTGACGCCCGACATAAAGACGTCACACTACACTGT
GCAACGCCTCACAGATATGCGCTACACACCTGGGCAGCGTCGCATCCTTGTGATCCGAAAATTATTAAGTCAGTGTGCAG
CGCCTGAGAGATAGG
>chr2D_390
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---------------------------------------------------------------------CACCATAGTCA
ATGCTTATTGTGGTATTGTGTCAAATCAGTTTGATCATAGCAACTACTCGTGGTAATCGGTTGGATCATTTGGTTGTGAC
TCAGAAACAAATGTAG------TTTCCATTACTGCCGGTATTATTTGAAAGCTTATTTGTTAATCAAATTGATCATTTAT
TTCGTCTATCATTCTTGTGTAGTTCACACTCCCAACTACAACAGACATCACATTTCCAAATTATTATTGATCTGGAAGAT
GGAAGCTATTTT-TTTATGGACTACCCCCTCCGTCCCATAATGTAAGATCGTTTTGCAAGCTGTTTTAGCTTGCAAAACG
ATCTTATATTGTGGGATGGATGGAGTATGTTCTAGCAATAGCCA----------------TTAGTCTAGGTATACTCTTC
TACGTTTATCATCCTTGCAGATTCAGATTATAGTGAATTAAA-GATAGCAGTAGTCGTGCTACTTGAGTTTTTGACTGGG
CATGAATTGATCAGTATTTGTTTAACCATCTCTTATTAATAGGCACTTCTGGTTCACTCTTTGGTTTCTAGCTGAAGTC-
CCATCCTAGAGGGGTAGAGGCATTCCATTTCCTTCAGTTCAGTGATTGAGAATGGAAAATGGATTTCCTGGCGAAGTTCT
GAAGGCTGTTTTCCCTCTACTGGATGGTAAAGACTTGGTCTTTTGCATGCTTGTATGCCGCCAATGGTGCGAAATTGCAA
AGGATGATTACTTCTGGAAATGCATCTGCTCACGGAAATGGCCTTCCATCTGCAAGCAGCCTCCTTCTGACACAAACTTC
CAAAAGCTCTATTTAACATTCTCCAAGCCACGGAAGACAGTACACCTTCCTGTACCTAAGCTCACTTTTGAGGATCTGGT
GTTTTACATTGACATGTGGCTTGAGGGATCACTAATCTTCTCTCAAGCAGTTTCAGGCTGCATCCTTCGAGCAGGTTTAC
AGAACACACCTGGCGGCATACCAGATGTACTTGTTGCACATCTGAATGCCGCAGACTGCATTTTGATGATGGAAGTCAAA
CCCAAGCTGACAGTCCCTATGGGGCCAGCCATCACCGTGTCTGTTCTTGCCCACCGCAAGGACACCAACAAGATGACTTG
CATAATCAATACGTCGAGTTTTGATTACATTGACAGCAATGCAGCACGGGCGTTGGCATATGAATATCTCAGGTTTTCGC
CCAGACACCCTTTCATATCAGACATCCGGGCCTGGATGTCCTTGCTTTTCCTGTATAAAGGAACAAACTCTATAGAGGTA
TTTGGTATTGAACTAGATTTTTGTGATGCGGCAAGGTCCGAGCCTGAGATCTTGTGGCTCTTAGACATGCTTGATTGGAA
ATAGAAGCTACTCTTTAGTTGTGATTTGAGCCTTTGAGGCATGTAAAGAATGTTCATGATATGTTGATCATCTACTGTTG
TATTACTGAAATATATGCTTTAAGATGTTGGAATAAAATGGCGATGTGAGCCCATTGATTTTCTATACCGTTCATGATTT
GGTATCGACTGATTTAGCCAGCAAGGTGTTGAAGACTGCCTTTTGGCCCATAGTAGATTTGGTTTCTATGGATAATTGCT
TGTGCTAAATCAACAACAATTAATATGGATCGGAGGGAGTATATTATATTAGCCTGCTATTGTGTG-CCCATCATTTGTT
CATTGGTGCATTCAAATTTTCGCGAGTTTTTTAGCCTGGCATTTCATTGTTGTTGTTTTTTGACTTTGGCAAGGATTTCT
AGCTTAGTATATTTGCTATTTCTCGTGAAATTTGGTGGAGAGGGGAGGAGCGGGAGCGTTAGGAGTGTTGTTCCCTTTCT
AGGGAGCTTACAAAAACTCTAGCAGAGTTGC---------ACTCTTCAAAACACTC------------CCATCAAATTTG
GGAGTGTGCGAGACAGATGTACAAAATCAGAGTCACAATGTCTTGGCCTACAAAATGGTCTTT--TCTCTTCTTTTCGTT
CACACATTTGGATTAAACGTTTCATATCATTTCGAAAGCATCATGCACACAATTTTTAAACAAAATTGCATGAATAGAAG
ACAAAACATTATGCACATTCA----A----CATGTACAAATCACATATCCCCGACGACTCCCCCATTCTTTGCACCGTCC
TTTCC-CCGGTATGTGCATAGT----------------------------------------------------------
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>chr2B_390
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---------------------------------------------------------------------CACCATAGTGA
ATGCTTATCGTGGTATTGTGTCAAATCAGTTTGATCATAGCAACTACTCGTGGTAATCGGTTGGATCATTTGGTTGTGAC
TCAGAAACAAATATAGTTTCACTTTCCATTACTGCCAGTATTATTTGAAAGCCTACTTGTTAATCAAATTGATCATTTAT
TTCTTCTATCATTCTTGTGTAGTTCACACCCCCAACTCCAACAGACATCACATTTCCAAATTATTATTAATCTGGAAGAT
GGAAGCTATTTT-TTTTATGGACT--------------------------------------------------------
-----------------------AGTATGTTCTAGCAATAGCCATTAGTCCATGTTCTGCTTAGTCTAGGTATACTCTTC
TACGTTTATCATCCTTGCAGATTCAGATTATAGTGAATTAAAAGATAGCAGTAGTTGTGCTACTTCAGTTTTTGACTGGG
CATGAATTGATCAGTATTTGTTTAACCATCTCTTATTAATAGACACTTCTGGTTCGCTCTTCGGTTTGTAGCTGAAGTCT
CCATCCTAGAG-GGTAGAGGCATTCCATTTCCTTCAGTTCAGTGATTGAGAATGGAAAATGGATTTCCTGGCGAAGTTCT
GAAGGCTGTTTTTCCTCTACTGGATGGTAAAGACTTAGTCTTTTGCATGCTTGTATGCCGCCAATGGTGCGAAATTGCAA
AGGATGATTACTTCTGGAAATGCATCTGCTCACGGAAATGGCCTTCCATCTGCAAGCAGCCTCCTTCTGACACAAACTTC
CAAAAGCTCTATTTAACGTTCTCCAAGCCACGGAAGACGGTGCACCTTCCTGTACCTAAGCTCACTTTTGAGGATCTGGT
GTTTTACATTGACATGTGGCTTGAGGGATCACTAATCTTCTCTCAAGCAGTTTCAGGCTGCATTCTTCGAGCAGGTTTAC
AGAACACACCTGGCGGCATACCAGATGTACTTGTTGCACATCTGAATGCCGCAGACTGCATTTTGATGATGGAAGTCAAA
CCCAAGCTGACAGTCCCTATGGGGCCAGCCATCACCGTGTCTGTTCTTGCCCACCGCAAGGACACCAACAAGATGACTTG
CATAATCAATACGTCGAGTTTTGATTACATTGACAGCAATGCAGCACGGGCATTGGCATATGAATATCTCAGGTTTTCAC
CCAGACACCCTTTCATATCAGACATCCGGGCTTGGATGTCGTTGCTTTTCCTGTATAAAGGAACAAACTCTATAGAGGTA
TTTGGTATTGAACTAGATTTTTGTGATGCGGCAAGGTCCGAGCCTGAGATCTTGTGGCTCTTAGACATGCTTGATTGGAA
ATAGAAGCTACTCTTTAGTTGTGATTTGAGCCTTTGAGGTATGTAAAGAATGTTCATCATATGTTGATCATCTACTGTTG
TAGTACTGACATATATGCTTTAAGATGCTGGAATAAAATGGCGATGTGCGCCCATTGGTTCTCTATACCGTTCATGATTT
GGTATTGACTGATTTAGCTAGCACGGTGTTGAAGACTGCCTTTTGGCCCATAGTAGATTTGGTTTCTATGGATAATTGCT
TGTGCTAAATCAACAGC-ATTAATATGGGTCGAAGGGAGTGTATTATATTAGCCCGCTATTGTGTG-ACCATCATTTGTT
CATTGGTGCATTCAAATTTTAGCGAGTTTTTTAGCTTGGCATTTCATTGTTGTTGTTTTTTGACTTTTGCAAGGATTTCT
AGCTTAGTATATT-GCTCTTTCTCATGAAAGTTGGTGGAGAGGGGAGGGGCGGGAGCGTTAGGAGTGTTGTTCCCTTTCT
AGGGAGCTTACAAAAACTCTAGCAGAGTTGCCGTATGTGCACTCTTTAAAACACATATGAAGCGTGCTCCATCAATTTTG
GGAGTGTGCGAGTC-GATGTACAAAATCAGAGTCACAATGTCTTGGCCTTCAAAATGTT-TTTTCTCTCTTCTATTCGTT
CACACATTTGGATTAAACGTTTCATATCCTTTCGAAAGCATCATGCACACATTTTTCAAACAAAATTGCATGAATAAAAG
ACAAAACAATAAGCACATTCAACCGA----CATGTACAAATCACATGTCGCCGACGACTCC---ATTCTTTGCACCGTCC
TTTCCTCCGGTATGTGCATAGTCACCTCCTCCGGTGTG------------------------------------------
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>SNPs
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS------S----
------------------------------------------------------------------------S-------
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-----------------------------S------------------------------------S-------------
------------S---------------S---------------------------------------------------
----------------S---S-------------------------S---------------------------------
--------------S-----------------------------------------S-----------------------
-------------------------------------------------S--------S------------------S--
-S---------------------------------------------------------------------S--------
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-------------------------------------------------------S------------------------
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---------S----------------------------------------------------------------------
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--------------------------------------------------------S-----------------------
--------------------------S--------------------------------------S---S----------
-----------------------------------------------------------------SS--S-S--S--S--
-----------------------------------------S--------------------------------------
---------------------------------------------------S----S---SS------------------
---------------------------------------------------------------------S----------
----------------------------------------------------------------------S---------
---------------------------------S---------------------------------------------S
--------------------------SSSS-------------------------------S-----S-----------S
---------------S-------------------S--SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSS
>forward_49
-----------------------------ATGATACCCCGCACGTTGTT-------------------------------
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>reverse_1947
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--------------------------CGTGAAGACTGCCTTTTGGC----------------------------------
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