>input_sequence_69722
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--------------------------------------------------ATGGCTGCGGCGGCTGGTG-----------
-GTGGTGTTGCGGGGGTGGCGGGGTCGCCGTGCGGGGCGTGTAAGTTCCTGCGGCGGCGGTGCGTGGCCGAGTGCGTCTT
CGCGCCCTACTTCAGCTCCGAGCAGGGCGCGGCGCGCTTCGCGGCCATCCACAAGGTCTTCGGCGCCAGCAACGCCGCCA
AGCTGCTCGCGCACCTGCCCCTGGCCGACCGCTGCGAGGCCGTCGTCACCATCACCTACGAGGCCCAGTCCCGCCTCCGC
GACCCCGTCTACGGCTGCGTCGCACAGATCTTCGCCCTCCAGCAGCAGGTCCGTCCGGCGCTCGTCTCA---------TT
CTTCTTCTTCCATCTTCTTCCTTGCCGATCACTCCTTCGG--TCGATCAATCAATCA----GCTGGCCACTTCCCGTCAT
GGACGCAAGCTGATGATTTGATTTCTTGCTTATTGCAGGTGGCGATCCTGCAGGCGCAGCTGATGCAGGCCAGGGCGCAG
ATCGCGTGCGGCGTCCAGAGCACCGCCTCGCCGGTCAGCCATCAGTGGCCGGACAGCAGCAG------CAGCAGCATCGC
CTCCCTGCTCCGGCAGCAGGAGGTCAATAGCGGCAGCTTCGCCACCGGCGGACCGCTTCTGCCAGAGCTCATGGGTGGGG
ACGTGTCCATGCTGCAGCAGCATTGCGGCGGCAAGGTGGAGGGCGGCGGAGGAGGCGGCGCCGGGGACCTCCAGTACCTG
GCTCAGGCCATGATGAGAAGCTCCAACTACTCCCTGTAG-----------------------------------------
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>chr6A_1_TraesCS6A01G398400
AGATACAGAGGCCGGGGTCATCCTCCATTTCTAACAAAAAAATATTAGTCTCGCTGCTACTATTTCTTACTGCAAGTGCT
ATACACTGATTGGAAGAAAAAAAAATATGTTGTGGACAGTGGGAGGAGCGGTGTCACTATCAGTTTGTACGTAGCAGTAT
TTGTATGCACGT----------------CGGGATAAATCCACGGGGCATGGATTCAGGTGGCGGTCGTCGACCGTGCGAA
CTAAAGCGCGGCCATTCGGCGGGAAATGCTTTCTTTATCCATCTGTCTATGCCCTGCCAGTGCACGCACGTACGTGCGCA
CACCCTCACCTGGTTTTTTCTCA-----ATTCATTTTTCAGATGCGATGTTGACCGGCCACGCCCAGTGGCTGATTGATC
GATCCCTTTGTACGTACGTTTCAGCCTCTCCTGCAACCCTCTCCCTGCGACCTGTACCGGAATGTGCGTGACAAACAAAC
AAAGATGG-------GATGAGAAGCATTTTCATTTCACATGCACGCACGCACGCATTGCGCATT---------------C
CACATGCCCGTCCAGTTGAGC----AGCGCCATGAACATTTCCCTTTTTTTAGTGG---TTAATTGGTTGTAAATTAGTA
CTCCTTCCGTTCTAAAATTCTTGTCTTAGATTTATCTAAATACGGATGTATCTAACACTACAATGTAATTAAATACATTC
ATATTTAGATAAATTTAAGACAAGAATTTTGATACGGATGGAGTATAAATTAGGGTAAAAGAAGCCGGCCGGGCTCCTTG
TATTCAACGCAGCATTTACACGTTTGCTCCCCTCAAACCGGACAAACGCTGCCCTACTTGT-----CTCTCCACCACCTT
CTCCTAATCTTCTTCCTCCTT-----------CGCCACCGTCCCATTCCCCG---CACGCTCCCCAGCTCCCCTCTATAA
ATACCCGTCCAACCTCAACCTGCACCGGTACCGGCCGGCGAACGAAGTAGCTAGCTA-------------GCAAGGCACG
TCGTCCTCGACCGAGAAGCTCCGTCGGCGC--------TAGGAACAATCGATGGCTGCGGCGGCTGGTG-----------
-GTGGTGTTGCGGGGGTGGCGGGGTCGCCGTGCGGGGCGTGTAAGTTCCTGCGGCGGCGGTGCGTGGCCGAGTGCGTCTT
CGCGCCCTACTTCAGCTCCGAGCAGGGCGCGGCGCGCTTCGCGGCCATCCACAAGGTCTTCGGCGCCAGCAACGCCGCCA
AGCTGCTCGCGCACCTGCCCCTGGCCGACCGCTGCGAGGCCGTCGTCACCATCACCTACGAGGCCCAGTCCCGCCTCCGC
GACCCCGTCTACGGCTGCGTCGCACAGATCTTCGCCCTCCAGCAGCAGGTCCGTCCGGCGCTCGTCTCA---------TT
CTTCTTCTTCCATCTTCTTCCTTGCCGATCACTCCTTCGG--TCGATCAATCAATCA----GCTGGCCACTTCCCGTCAT
GGACGCAAGCTGATGATTTGATTTCTTGCTTATTGCAGGTGGCGATCCTGCAGGCGCAGCTGATGCAGGCCAGGGCGCAG
ATCGCGTGCGGCGTCCAGAGCACCGCCTCGCCGGTCAGCCATCAGTGGCCGGACAGCAGCAG------CAGCAGCATCGC
CTCCCTGCTCCGGCAGCAGGAGGTCAATAGCGGCAGCTTCGCCACCGGCGGACCGCTTCTGCCAGAGCTCATGGGTGGGG
ACGTGTCCATGCTGCAGCAGCATTGCGGCGGCAAGGTGGAGGGCGGCGGAGGAGGCGGCGCCGGGGACCTCCAGTACCTG
GCTCAGGCCATGATGAGAAGCTCCAACTACTCCCTGTAGA-------AGAAGAATATCATGATCAAGATCAAACCATGCA
TTTTGCATGCTTCCAACAACCTCATCGACGATCTA----TCAGAGTGCTGCTAGCTGGTGGAATCGTGTCGGCGGCGGCG
CC--AGATCGAGCTAGAAGAACGCAGGAGAGAGGGAATTGATTAACCTGTACTGAACTTTTT--ATCAGTGTTAATTCTG
ATCCTACAAGTTACTATTGTACTACATATTATATATCTATATA----TTAGAGGAGGCGCAAGCCCTGCATGAGTGGCTC
AGTTGATGAATCTATAC------------------AAGCAGCTTATATATTGCAAGATCACCCATTATCGGACTT---TT
ATTTTGCAAGTCTCGATAATGACATCACTGAAAAAGATATGTATGCGGAAGTAGTATATGTAATCCTTCTG----ATGGC
CTAGTGAACCCAATCATGCGGAACAGATTAA------------GCGATTAGGTTGCAGCAAGATGCATGAAACAAAGTTC
AATATGAATGATGTAGTAAAATGTGTAAATCTTGCAGTTGCAGGCTCTGGTAGGATGAACCAAAACTCTACCGTCTGAAG
CTACCCTTTGTACGTTTGTTTGTGTTGGAAATAGTTTAGAAGTTTGATA-----GTGCATCA-AAAAGTTCAAGGAAGAG
TTTGAAAAATGAATACAAGTTACATTTTCTGCACTGTTGCTCTGTTGTATCTCAAC------------TGTCTGAAACTG
TCAGTTTTACGCGAATCTCTTTTCGGCGCAAGTTTGAAAACTGT----------------TTGGAAACAATTTACGCCAA
AGTTTGGTACTAGTGCATGCATACCAAAAGTCCAAGTAAGAGTTACCACAA-TAGCACACAACTTTGAGTTGCCATCAAG
TTTCCCCCTCTCTAGAGACCCTAAAATCACTTGTATACATTCATAGCTAGGCTTGTACGCACAC-----TAGTATAAACT
CATAGGCTGCTGCTGATAATCCTAGTTTTTCATGCCAAGCACAAAGACTGTCCCCCTGATCAAGGACATGTATGAACTGC
CCAGCCGCTCATCAA
>chr6D_41
----------------------------------------AATATCAGTCTCACTGCCACTATTTCTTACTGCAAGTGCT
ATATACTGATTGGAAG---AAAAAATATGTTGTGGACAGTGGGAGGAGCGGTGTCACTA-----TTGTACGTAGCAGTAT
TTGTATGCACGCACGCACGCACGCACGCCGGGATAAATCCACGGGGCATGGATTCAGGTGGCGGTCGTCGACCGTGCAAA
CTAAAGCGCGGCCATTCGGCGGGAAATGCATTCTTTATCCATCTGTCTATGCCCAGCCAGTGCACGTA------------
----CTCACCTGGTTTTTTTCTCAATTCATTCATTTTTCAGACGGGATGTTGACC------------TGGC----TGATT
GATCCCTTTGTACGTACGTTTCAGCGTCTCATCT---------CCTGCGACCTGTACCGGAATGTGCGTGACAAACAAAC
AAAGATGGGAC--GAGATGAGAAGCATTCTCATTTCCCATGCACGCACGCATTGCGCTTG--CACTTCATCGTCGAGACC
CACATGCCCGCCCAGTTGAGC----AGCGCCATGCACATTCGCATTTTTTTAGTGCTTATTAATTAGTTGTAAATTG---
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---------------------------------------------TAAATTATGGTAAAAGAAGCCGGCCGGGC-CCTTG
TATTCAACACAGCACTTACACGTTTGCTCCCCTCAAACCGGACAAACGCTGCCCTACTTGTCTCTCCTCTCCACCACCTT
CTCCTAATCTTCTTCCTCCTCTTCACCTCCTGCGCCACCGTCCCATCCCATCAGCCACGCTCCCTAGCTCCCCTCTATAA
ATACCAGTCCAACCTCGACTTGCACCGGTACCGGCCGGCGAACCAAGTAGCAGCTAGCTAGCTAGCAAGGGCAAGGCACG
TCGTCCTCGATCGACAAGCTACGTCGGCGC--------TAGGAACAATCGATGGCTGCGGCGGCTGCTGCTGGTGCTGGT
GGTGTTGCGGCGGGAGTGGCGGGGTCGCCGTGCGGGGCGTGCAAGTTCCTGCGGCGGCGGTGCGTGGCGGAGTGCGTCTT
CGCGCCCTACTTCAGCTCCGACCAGGGCGCGGCGCGCTTCGCGGCCATCCACAAGGTCTTCGGCGCCAGCAACGCCGCCA
AGCTGCTCGCGCACCTGCCCCTGGCCGACCGCTGCGAGGCCGTCGTCACCATCACCTACGAGGCCCAGTCCCGCCTCCGC
GACCCCGTCTACGGCTGCGTCGCCCAGATCTTCGCCCTCCAGCAGCAGGTCCGTCGTCTCGTCCCATTCTTCTTCTTCTT
CTTCTTCTTCCATCTTCTTCCTTGCCGATCACTCCTTCGTCTTCGATCGACCAATCA----TCTGGCCGC-------CAT
GGACGCAAGCTGAGGATTT-----CTCTTTTGTTACAGGTCGCGATCCTGCAGGCGCAGCTGATGCAGGCCAGGGCGCAG
ATCGCGTGCGGCGTCCAGAGCACCACCTCGCCGGTGAGCCACCAGTGGCCGGACAGCACCAG------CAGCAGCATCGC
CTCCCTGCTCCGGCAGCAGGAGGTCAATAGCGGCAGCTTCGCCACCGGCGGAGCGCTTCTGCCAGAGCTCATGGGTGGGG
ACGTGTCCATGCTGCAGCAGCATTGCGGCGGCAAGGTGGAGGGCGGT---GGCGGCGGCGCCGGGGACCTCCAGTACCTG
GCTCAGGCCATGATGCGAAGCTCCAACTACTCCCTGTAGA-------AGAAGAATATCATGATCAAGATCAAACCATGCA
TTTTGCATGCTTCCAACAACCTCATCAACG----A----TCAGAGTGCTGCTAGCTGATGGAATCGTTTA---GGCGGCG
CC--AGATCGAGCTAGAAGAACGCA----AGAGGGAATTGATTAACCTGTACTGAACTTTTT--ATCAGTGTTAATTCTG
ATCCTACAAGTTACTATTGTACTACATATTATATATCTATATAAGTATTAGAGGAGGCGCAAGCCCTGCATGAGTGGCTC
AGTTGATGAATGATGATTACCACTTCTATATAA----GCAGCTTATATATA----------------------------T
ATATTGCAAGTCCTGATAGTCACATCACTGAAAAAG-----------------GTATATGTAATCTTGCTGATGCATGGC
TTAGTGAACCCAATCTTGTGGAATCATGTGGAAAAAAAATTAGGCGATTAGGCTACAACAAAAGACACGAAATAAAGTTC
AGTATGAATCATGGAGTAAAATATGTAAATCTTGCAGTTGCAGACCAGCAGGATGAAACACAACTCTCTACTGTCTGAGG
CTATCATTTTAT--TTTATTTGTGCTGGATATAATTTAGAAGTATGATATGATGGTGCATTCCAAAAGTTCAAGGAAGGG
TCTGAAGATTGTTTACAAGTTCCA-TCTCTGCAATGTCCCTCTGTTGTGCCTGTACTGTACCCCAGCTTGTCTAAAACTG
TCAGTA----------------TCAGCACAAGCTTGAAAACTGCTTGGGTTTGATTTGTGTTGGAAATAATTTACTCCAA
AGTTTGAC---AATGCAC----CACAAAAATTCAAGGAGAAGTTACTAGTACTAGCACGCAACTTTGAGTTGCCACCAAG
TTTCCCTCTCT--AGAGACCCTAAAATCACTTGTATACATTCATAGCTAGGCTTATATACAC----TAGTAGTATAAACT
CATAGGCTGCTGCTGATAATCCTAGTTTTTCATGCCAAGCGCAAAGACTGTCCCCCTGATCAAGGACATGTATGAACTGC
CCAGCCGCTCAGCAA
>chr6B_360
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------------------------------------------------------------CGGCCAGTGGC----TGATT
GATCCCTTTGTACGTACGTTTCAGCGTCTCCTGCAACGCTCTGCGACCGACCTGTACCGGAATGTGCGTGACAAACAAAC
AAAGACGGGATGAGAGATGAGAAGCATTCTCATTTCCCATGCACGCACGCGTTGCGTCTTTACACTCCATCGTCGACACC
CACATGCCCAGCCAGTTGAGCAGCTAGCGCCATGCACATTTGCATTTTTTAAGTGG---GTAATTGGGTGTAAATT----
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-----------------------------------------AGTATAAATTAGGGTAAAAGAAGCCGGCCGGGC-CCTTG
TATTCAACACAGCATTTACACGTTTGCTCCCCTCAAACCGGACCAACGCTGCCCTACTTGTCTCTCCTCTCCACCACCTT
CTCCTAATCTTCTTCCTCCTT-----------CGCCACCGTCCCATCCCATCACCCACGCTCCCTCCCT-CCCTCTATAA
ATACCAGGCCAACCTCAACCTGCACCGGTACCGGCCGGCGAACCAAGCAGCTAGCTA-------------GCAAGCCACG
TCGTCCTCGATCAAGAAGCTCCGTCGTCGCTAGGGAAGTAGGAACAAACGATGGCTGCGGCGGCTGGTGGTGGTGCTGGT
GGTGGTGTTGCGGGGGTGGCGGGGTCGCCGTGCGGGGCGTGCAAGTTCCTGCGGCGGCGCTGCGTGGCGGAGTGCGTCTT
CGCGCCCTACTTCAGCTCCGAGCAGGGCGCGGCGCGCTTCGCGGCCATCCACAAGGTCTTCGGCGCCAGCAACGCCGCCA
AGCTGCTCGCGCACCTGCCCCTCGCCGACCGCTGCGAGGCCGTCGTCACCATCACTTACGAGGCCCAGTCCCGCCTCCGC
GACCCCGTCTACGGCTGCGTCGCCCAGATCTTTGCCCTCCAGCAGCAGGTCCGCCGATCTCGATATTCA-----------
-------TTTCATTCCCTTCGCCTCCGATCACTCCCTCGTCTTCGATCGACCAATCAATCATCTGGCCGC-------CAT
GGACGCAAGCTGATGGTTT-----CTTGTTTGTTGCAGGTCGCGATCCTGCAGGCGCAGCTGATGCAGGCCAGGGCGCAG
ATCGCGTGCGGCGCCCAGAGCACCACCTCGCCGGTGAGCCACCACCAGCCACAGCCGTGGTTGCAGGACACCAGCATCGC
CGCCCTGCTCCGGCAGCAGGAGAACGGTAGT---AGCTTCGCCGCCGGCGGTGCGCTTCTGCCAGAGCTGATGAGCGGCG
ACGTATCCATGCTGCAGCAGCATTGTGGCGGCAAGGTGGAGGGCGGCGGCGGCGGCGGCGCCGGGGACCTCCAGTACCTG
GCCCAGGCCATGATGCGAAGCTCCAACTACTCCCTGTAGATTGTAGAAGAAGAACATCATGATAA------AACCATGCA
TTTCACATGCTTCCAACAACCTCGTCGACG----ATCTATCAGAGTGCTGCTAGCTGATGGAATCGTGTC---GGCGGCG
CCAGAGATCGAGCTAGAAGAACTCAG--GAGAGGGAATTGATTAACCTGTACTGAACTTTTTTTATCAGTGTTAATTCTG
ATCCTACAAGTTACTATTGTACTACATATTATATATCTATATA----TTAGAGGAGGCGCAAGCCCTGCATGAGTGGCTC
AGTTGATCAATGATGATTACCGCTTCTATATAATTAAGCAGCTTATATGTTGCAAGATCACCCCTTATCGGATTTTTATT
TTTTTGCAAGTCTTGATAATGACATCACTGAAAAAA-----------------AAATATGTATGTT--------------
-----------------------CAGAGTAA------------GCGATTAGGTTGCAGCAAGATGCACGAAACAAAGTTC
AGTATGAATGATATTGTAAAATGTGCAAGTCTTGCAGTTGCAGGCTCTAGTAGGATGAACCAAAACTCTACCGTCTGATG
CTGCCCTTTGTATGCTTATTTGTATTGGGAATAGTTTGGAAGTTTGATA-----GTGCATCCCAAAAGTTCGAGGAAGAG
TTTGAAAAATGAATACAAGTTACA-TTTCTGCACTGTTGATCTGTTGTATCTCAGC------------TGTCTGAAACTG
TCAGTTTTACGCGAACCTCTTTTCGGCGCAAGTTTGAAAACTGTTTGGATTTGATTTGTGTTGGAAACAATTTACGCCAA
AGTTTGGTACTAGTGCAT----ACCAAAAGTCCAATGAAGAGTTACTA----TAGCGCACAACTTTGAGTTGCCACCAAG
TTTCCCCCTCTCTAGAGACCCTAAAATCACTTGTATACATTCATAGCTAGGCTTGTATACACTACTTAGTAGTATAAACT
CATAGGCTGCTGCTGATAATCCTAGTTTTTCATGCCAAGCGCAAAGACTGTCCCCCTGATCAAGGACATGTATGAACTGC
CCAGCCGCTCA----
>SNPs
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS-----S------S----S----------------------
---S------------SSS----------------------------------------SSSSS----------------
-----------S-----------------------------------------------------------------S--
-----------------------------S------------------------S-----------S-SSSSSSSSSSSS
SSSS---------------SSSS-------------------S-S----------SSSSS--S--------SSSS----S
-------------------------S-----------S----S-------------------------------------
----------------------------S-------S--------------SSSSS-SS-S-SS----------------
----------S-----------------------S------S-S--------------------------------SSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS---------------------------------S-----
--------S-----------------------------------------------------------------------
----------------------------------------------S--SSS------------S---------------
-----S-------------------------------------S------------------------------------
----------S---------------------------------------------------------------------
-----------------------------------------S--------------------------S-----------
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-----------------------S-------------------------------SSS-S---SSS--------------
---------------------------------------S--------S-S----------S------S-SSSSSSS---
-------------------SSSSS----S--S--------S---------------------------------------
------------------------S----------S-----S--------------------------------------
----------------------------------------------------S---------------------------
-------------------------------------------------S--S---------------------------
---------------S----------------------------------------------------------------
------------------------------SSSS-----------------------S------------SSS-------
--------------------------SS----------------------------------------------------
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-----------SSSS-S----------------------------------------------S--------S-------
-------------S----------------------SSSSSSSSSSSSSSSSS------------S-S------------
S--------------S--S--------S---------------------------------------S------------
-S----------------------------------------------S-----------------------------S-
------------S----S-------------------------------------------S------------------
------------------------S-------------------------------------------------------
---------------S----------------------------------------------------------------
------------------SSSS--------------S---------S-SS-------------------------S----
---------------------------------------------------------SS---SS----------------
----------------------------------------S---------------------------------------
-----------S---
>forward_602
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----------------------AGCAGCGCCATGAACATTTC--------------------------------------
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>reverse_1517
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----------------------------------------------------------------------------TCAT
GGACGCAAGCTGATGA----------------------------------------------------------------
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>forward_604
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------------------------CAGCGCCATGAACATTTCCC------------------------------------
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>reverse_1549
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----------------------------CTTATTGCAGGTGGCGATCC--------------------------------
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>forward_1514
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------------------------------------------------------TCAATCAGCTGGCCACTTCC------
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>reverse_2656
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---------------TCTCTTTTCGGCGCAAGTTTG--------------------------------------------
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