>input_sequence_69707
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--------------------------------------------------------ATGGTCAAGGAAATCAAGCAGAGC
AAAGCCGTCTTCGTCTTCCCGCGGTGCTTTGGCCT-TCGCCGCGCAACACGTCCCCGCCACGGCAGGAAGGAGAAGGAGC
GTCCTGCTTCTCGGCCAGCAGATTGGAGGGACTGGGCGGCGCTGCCCGTCACCGCCCTGCGCGCGATCTTCAAGCGCCT-
--TCAGACGGACGTCCTCCGAGGGACGGGGCCGGGGCTGGCGTGCGCGTCGTGGCGGCGGGCGGCCGTCGAGGACCCGCT
GCTATGGCGCCGCATCGACCTCGCCTCCGACGAGGACATGCAGAGGGACGGTCCGGTAGGATGGGAGGCGATGGCGTGTG
CCGCCGTGGACCGCAGCGCCGGCCTGTGCGAGTCCTTCCGCGGCCGCGTCGACGGCGACTTCCTCGTCTACCTCGCCGAC
AGGTACGCCGTCCGATCTAAATCT-GATCAAACGTGAAACCAGTCGATCGATCGATCGGTCAACACGT-ACGTGAGCTAA
CTGAGGAGCACCGTGCGTGCGTGCGTGCGTACGTGCAGGGCGCCGTTGCTGAAGAGCCTCCACGTGACAA-------GCT
CGTTCGACATGGACCACAACAAGCTTGGCGCGTTGGCGATGGAGAAGCTGCCCCTGCTGGAGCGGCTCGTGGTGGCGAAG
GGTTTCTTCGACGAGCGTATGCTGTGCGCTGTCCTCGACCACTGCCCGCGTCTCCGGCTGCTCGACGCCGGCGGCTGCTA
CACCTTTAGACAACAGTTTTGTTAG-------------------------------------------------------
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>chr3B_1_TraesCS3B01G537900
ATACACCCATTGTTTTGTACAGCACATCTGTTCAACTCCCAGGGATTGTAAATTGGGCTACCATGAATTCATGATTGCAG
ACAGCCGCTCGGGCACAACAAGTTGCTTGAGTCTTTTTTCTCCGGTAATGCTAACTGGTGAACGTTCGCTGGGAAGAAAC
TCCCAGCGAACGCCCTTGCAGCCGTTTGATCAAAGTAATTGCCACCCCCCAGATTCCAGTTCTTTTAGTTGAACATCTTC
TGTTTTTAGGAGAGACCTGTGGACCAGGGATTGCGTCCAGATTTTATTTTTGGGACTGCAATGGCGTGGCTGGTAGTTTA
GTGTTTTGGGATCGCATTTTTGTCTTAAAGCATGACATTTTTGTTTATTATACAGTGTATTTTTCAGCTGAAAACTGCCA
CCATCAGTTCTTGATCCTGTGGCTACGAGAGGCTTCACCGGGGATTTCCTCCAGAGGAACGGTCGCCAGATAACATTCCT
ATTTTATTTTATTTTTT----CCTCCGGAGAGACTTGCCAATGTACGATCACCAATGACTATTAACAGCCTGTTTGTTTC
GGGGGAAGTAGTATTAGGGAATGGGAATTAGGAGGGCGTGGGATTTAAATTCCCTTGTTTGATTGGAGGACAGGGGAATT
GATGATGGACGGGGAAAGGGAGTTGCCCGTCAAACTCCCACTATCTCTTCCCACGGGGGCTCTGGTAATTGAAGGAGGGA
ATGGGAAATGAGAGAGAAAAAACCAATCGCCATGTTCGTTGCTCCCATCCCGCAAGCTGCGGAAACAAGATTCCCACGAC
TAACACCCACCCCAAACAAGGATTAGGACTAATAGTCCACTTCCCATGTCTAATCTCTCAGCTAACTCCAACTTAAAAAT
TCCCATGCCTTTTCCCACGGACTGTAAAGACTTCCGATCTCTTGGATCCACTGCCACCGCCATATTCATCTCCTCGCCGA
TTTTCCC------------CACCTATACGCACACGTGAAAGCTCAAAGAAATCATCATGGTCAAGGAAATCAAGCAGAGC
AAAGCCGTCTTCGTCTTCCCGCGGTGCTTTGGCCT-TCGCCGCGCAACACGTCCCCGCCACGGCAGGAAGGAGAAGGAGC
GTCCTGCTTCTCGGCCAGCAGATTGGAGGGACTGGGCGGCGCTGCCCGTCACCGCCCTGCGCGCGATCTTCAAGCGCCT-
--TCAGACGGACGTCCTCCGAGGGACGGGGCCGGGGCTGGCGTGCGCGTCGTGGCGGCGGGCGGCCGTCGAGGACCCGCT
GCTATGGCGCCGCATCGACCTCGCCTCCGACGAGGACATGCAGAGGGACGGTCCGGTAGGATGGGAGGCGATGGCGTGTG
CCGCCGTGGACCGCAGCGCCGGCCTGTGCGAGTCCTTCCGCGGCCGCGTCGACGGCGACTTCCTCGTCTACCTCGCCGAC
AGGTACGCCGTCCGATCTAAATCT-GATCAAACGTGAAACCAGTCGATCGATCGATCGGTCAACACGT-ACGTGAGCTAA
CTGAGGAGCACCGTGCGTGCGTGCGTGCGTACGTGCAGGGCGCCGTTGCTGAAGAGCCTCCACGTGACAA-------GCT
CGTTCGACATGGACCACAACAAGCTTGGCGCGTTGGCGATGGAGAAGCTGCCCCTGCTGGAGCGGCTCGTGGTGGCGAAG
GGTTTCTTCGACGAGCGTATGCTGTGCGCTGTCCTCGACCACTGCCCGCGTCTCCGGCTGCTCGACGCCGGCGGCTGCTA
CACCTTTAGACAACAGTTTTGTTAGAACTCATCTAGATGAGATATAATTTGGTCTCATTCATCTTTTATAGTTATTGAAT
GTGATACTATAAGATGTGTGTGTGCTGACGTGAGCTGTATCTGTTCTTGTTTTCAAAGTGAATGAAGATCAAATTATATC
TCATCTAGATACCCTTCAAATAAACGTATACGCAATGTAAAAAACCCGGAGGGACTACATGAAGCATACGAGCATATCCA
GCCGCGCCCCCAACAGGCCCTTTTCAGGCGTTTTTTCCGCGCCGGCACTGAAAAAACGCCTCAGTCGCGCCCCCAGGACG
TCAAATTCCGCCGNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNGGAAAAGCGCGCCTGGGGCCACATTGTAAGGCGAAAATTCAAGCCACCCGTCCAGATTCGCCTCCTCGGCCG
CCACCCTGCCGATCCCGGCGCTGTCCACCGCCCACCGCTGCTAGATAGATCATTCCCCGCCGGAAAAAAGAAGAGGTTTC
GCCGAGGCAGCCTCTCCGCCGCCGTCCGGGCAACTTTTCCGGCGTACCGGCCGCGCAGGGCCTGTACACCGGCGGGTTTG
CGCCCACCTCACCCGCAAGGTGTTCGGTGATTTGCGCGGCCCGGCGATAGACTCCGAAGATGAGGAGGCGCTCGCGGCGT
TGCTGGAGGTGGAAGCCGAAGCCGACGTCCAGGAGCAGGAGCATCTCATGGTGCTCGCCGCCCTC
>chr3D_477
TCCAT---------------------------------------------------------------------------
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-----ATTTTAATTTTCTTCCCCTCCGGAGAGACTTGCCAATGTACGATCGCCGGTGACAAT------------------
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------------------------TAAAGACTTCTGATCTCTTGGATCCATTGCCATAGCCATATTCATCTCCTCGCCGA
TTTCGCC------------CAC------------GTGAAATCTCAAAGAAATCATCATGGTCATGGAAACCAAGCGGAGG
AAAGCCGTCTTCGTCTTCCCGCGGTGCCTTGGCCT-TCGCCGCG---CACGGCCCCGCCACGGCAGGAAGGAGAAGGAGC
GTCCCGCTTCTCGGCCAGCAGATTGGAGGGACTGGGCGGCGCTGCCCGGCACCGCCCTGCGCGCGATCCTCGGGCGGCTT
CATCAGACCGACGTCCTCCGCGGGACGGGGCCAGGGCTGGCGTGCGCGTCGTGGCGGCGCGCGGCCGTCGAGGACCCGCT
GCTGTGGCGGCGCATCGACCTCGCCTCCGACGAGGACGGGGACAAGGACGCTCCGGCGGGGTGGCAGGCGATGGCGCGCG
CCGCCGTGGACCGCAGCGCCGGCTGGTGCGAGTCCTTCCGCGGCCGCGTCGACGGCGACCTCCTCGTCTACCTCGCCGAC
AAGTACGTACGCCACCGT-AATCC-GATCAAACTTCCAATTAG-CAATAGATCCATCTACCAACACATGACGTGATCTAA
CCGAGGAGCGTGCATGATCTC----------CGTGCAGCACGCCGCTGCTGAGGAGCCTCCACGTGACGA-------GCA
TGCTTGACATGCACGGCTGCCAGCTTGGCACGACGGCGATGGAGAAGCTGCCCCTTCTGGAGCAGCTCGTGGTGGCGGGG
GGATACTTCGACCACGCTATGCTGTGCGCCGTCCTCGACCACTGCCCGCGTCTCCGGCTGCTCGACGCCGGCGGCTG---
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>chr3B_898
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---------------------CTATAGAGACTTTTGATCTATTGGATCCATTGCCATCTC--TAATCATCTCCTCGCCGA
TTTCGCTCACCTATACGTACAC------------GCGATATCTCAAAGAAATCATCATGGTCATGGAGACTAGGAAGAGG
AAAGCCGACCAG-------------GCCTTGGCCTGTCGCGGCT---CACGTCCCCGCCACGGCA------AGAAGGAGC
GTCCCGCTTCTCGGCCAGCAGATTGGAGGGACTGGGCGGCGCTGCCCGGCACCGCCCTGCGTGCGATCCTAGAGCGGCT-
--TCAAACCGACGTCCTCCGCGGGACGGGGCCGGTGCTGGCGTGCGCGTCGTGGCGGCGGGCGGCCGTCGAGGACCCGCT
TCTGTGGCGGCGCATCGACCTCGCCTCCGACGAGGACGGGGACGAGGACGCTGCGGCGGGGTGGCGGGCGATGGCGCGCG
CCGCCGTGGACCGCAGCGCCGGCCGGTGCGAGTCCTTCCGCGGCCGCGTCAACGGCGACTTCCTCGTCTACCTCGCCGAC
AAGTACGTACGCCACCGT-AATCCCGATCAAACTTCCAATTAG-CAATAGATCGATCTACCAACACGC-----GATCTAA
CCGAGGAGCGTGCATGATCTC----------CGCGCAGCGCGCCGTTGCTGAGGAGCCTCCACGTGACGACTGACGAGCA
TGCTTGACATGCGCGGCCGCAAACTTGGCGCGACGGCGATGGGGAAGCTGACCCTTCTGGAGCAGCTCGTGGTGGCGGGA
GGCTACTTCGACCACGCTATGCTGTGCGCGGTCCTCGACCACTGCCCGCGTCTCCGGCTGCTCGACGCCGGCGGCTGCTA
CACCTT--------------------------------------------------------------------------
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>SNPs
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSS------S----S---------------------------------S--SS----S--SSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSS--S----------S---------------S-----S-----------------------
---SS-----------------SSSSSSSSSSSS------S----------------------S-----S---------S
---------------------------S----------------SSS---------------------------------
----S-------------------------------------------S-------------------S--S----S---
--------S-----------S-----------------------------------------------------------
---S-----S---------------------------SS-S-S-S-----S-----SS--S---S-----------S-S-
------------------------S-------------------------------------------------------
-S-----SSSS--SSSS-S----S---------S-SS--SS--S-S--S--------SSS---------------S----
-S-------SSSSSSSS-SSSSSSSSSSSSS-------S-------------S---------------S----------S
S-S-S------S--SS-SS-------------SS---------------------S-------S-------------SS-
--S-S-------S-SSS------------S--------------------------------------------------
------SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
>forward_306
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----------------------------------------------TTTTTGGGACTGCAATGGCG--------------
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>reverse_1963
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------------------------------------------AACCCGGAGGGACTACATGA------------------
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