>input_sequence_69704
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------------------------------------------ATGGCTTCCCCTAAGCTTCTCCTCCTGCTGGCCACCCT
CCTCCCGAGCTGCGGCCTCCTCGTCGCCGACTTCGCGCCGATGACCCTCACCGTGGTGAACAACTGCGCGTACCCGATCT
GGCCGGGCATCCAGGGGAGCGCCGGCAGCGAGGTCCTGGAGGGGGGCGGCTTCTTCCTCCCG-TCGCTCTCCCACCGCTC
CTTCCCGGCGCCCGCCCACGCCTGGTCCGGCCGCGTCTGGGCGCGCACCGGCTGCGCGCCCTCCGCCGCCGGGGCCGGCC
AGCTCCGCTGCGCCACGGGCGACTGCGGCGGGCGGCTCCAGTGCGGGGGCCTCGGCGGCGCGGCGCCCGCCACGCTGGCG
CAGGTCTCCCTCCACCAC---GGCGGCGACGACCAGTCGTCCTATGGCGTGAGCGTGGTGGACGGCTTCAACGTGGGGCT
GTCGGTCACCCCGCACGAGGGACGCGGCAACTGCCCCGTCCTCGCCTGCCGCAAGGACCTCACGCAGACCTGCCCCGGCG
AGCTGCAGGTGCCCGG---------CGGCGGCGGCGGCGTGGCCGCGTGCAAGAGCGGCTGCCTGGCGTTCGGCACCGAC
GAGCTGTGCTGCCGCGGCGCGTACAACAGCCCCGCCGCCTGCCGCCCCTCCAGGTACTCGGACTTCTTCAAGAGCGAGTG
CCCGCAGGCCTTCACCTACGCGCACGACAGCCCCTCCCTCACCCACCAGTGCTCCGCGCCGCGCGAGCTCAAGGTCATCT
TCTGCCACTAG---------------------------------------------------------------------
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>chr3A_1_TraesCS3A01G357800
TGTACGTAATTCAACAGTTCCCGTAATGATTTAAGTGAAAAGAGAGTGTAAGTTTTATGCTAAGACAAGCACAATGTAGA
AATGATTGAGAGGTCATTTTGAGTGGGCATAGC-TCAACAAATCTCAGAATACTTAAGAGTGCAAATTTTGGCTCGTCCA
AAGCGGAAATGTAGAATTCAATGTTGTTTCTTCGTTTTTCGAGTGTTATTTATGCACTTCCTCACTAAAAATACGCAATT
TCAAATCCAATTCTCTTGTTTCTATTTATTTGCACCTACCACATCTTCGCGTGCATCAGATTACATGCGTCAAACTCAGG
CAGTTGCTGTCATTGCAAAAGAAAAGAAAAGAAAGGGTAATCGCTGAGCCAAAACACTTGCTCTTTTGTTACAAAGGTCA
TTTGTTTGAAATGGAGGCAAACCACACCTCGATGTTTGAAATGGAGTACAAGAAAACTATGTTTATTCGAACAAATATGG
CCAATCTAAACTTTATCGACTTGGGGAAATGAGGCACATCTCCTACCTCTGCTTCAAAAAGAAAGTTACTCTTTCAAAGC
TTTCACTGCACAAAGTATAGCCAGCACATCATCTTTTTGATAAATTTCACTTGTTTAGTTTGTAA---------------
------------------------------------AAAGATCTAACATCCATATCCAAATATTAGGTTTC-------AT
ATATCTATGCATCATTTGCATGCTGCT------TTTTTT-CTAGGGAAACATCATTTGC---------------------
-AGCTGCTCACTAATCAGCGTATCACACAAGACACAAGCTACTCCTTCAGAA----------------------------
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--------------------------------GTTTCATGCTGCCTG---------------------------------
---TGTTATCTCAATCCAAACAAGATTATA----------------------------GAGTCACTGACACGACACCCCA
AAGACCAAACCGCTTCCGCCGATCACACCCCACCCCAGTCCAATCCAAAATCTCCTATAAAACGACCCCAAAGCCCTCTC
ACCAGCCACCACAGT-CCACA-------------------------GTCCACAGTCTACTGACCAACTAGT----GTGCC
GAGAATTCAGTGAGCCCGCTAGCTAGCTAGCTAGCCACCGCCATGGCTTCCCCTAAGCTTCTCCTCCTGCTGGCCACCCT
CCTCCCGAGCTGCGGCCTCCTCGTCGCCGACTTCGCGCCGATGACCCTCACCGTGGTGAACAACTGCGCGTACCCGATCT
GGCCGGGCATCCAGGGGAGCGCCGGCAGCGAGGTCCTGGAGGGGGGCGGCTTCTTCCTCCCG-TCGCTCTCCCACCGCTC
CTTCCCGGCGCCCGCCCACGCCTGGTCCGGCCGCGTCTGGGCGCGCACCGGCTGCGCGCCCTCCGCCGCCGGGGCCGGCC
AGCTCCGCTGCGCCACGGGCGACTGCGGCGGGCGGCTCCAGTGCGGGGGCCTCGGCGGCGCGGCGCCCGCCACGCTGGCG
CAGGTCTCCCTCCACCAC---GGCGGCGACGACCAGTCGTCCTATGGCGTGAGCGTGGTGGACGGCTTCAACGTGGGGCT
GTCGGTCACCCCGCACGAGGGACGCGGCAACTGCCCCGTCCTCGCCTGCCGCAAGGACCTCACGCAGACCTGCCCCGGCG
AGCTGCAGGTGCCCGG---------CGGCGGCGGCGGCGTGGCCGCGTGCAAGAGCGGCTGCCTGGCGTTCGGCACCGAC
GAGCTGTGCTGCCGCGGCGCGTACAACAGCCCCGCCGCCTGCCGCCCCTCCAGGTACTCGGACTTCTTCAAGAGCGAGTG
CCCGCAGGCCTTCACCTACGCGCACGACAGCCCCTCCCTCACCCACCAGTGCTCCGCGCCGCGCGAGCTCAAGGTCATCT
TCTGCCACTAGACTG-----AGTGAGTCCAGCCAGGGCGGCGCTCGCCGTGCCGCCGC---CGGCCGTCAGCAGCTATGA
CTGGTCTGGGTCTGGGATCGAT-TAGTGCAGTGCGTGTCAGTCATCTCATCAGTCATGTGTGAGTGAGTGTTGGATTAGG
CTTTGGAGACTGGCAGGCTGCCCGGTGTGCTTGCTGTAGTTCGTGCTCTGTAGGCGTTCACCTCTCGTCTAGTTGTATGG
TGTTAGCTGCTGAGATTCCAGTCTGAAATAAC------------------------------------------------
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--------------------------------------------------------------------------ATGTTT
AGATGGGCATTGATCTGGTCACTTGGTCGCAAATGTTTTTAATCACTTCTATTGTGCATTTGAGTTAAAGTCCTTTTTCC
CCATTTTTCCTCTTAAGACATGGCAAAATCTC-----TGTGCAAAAGCAACATGTGTAAGGCAGATCTAGTGCCTTCACA
GTTCACACCACTGCTCGACATGTATGGGACGTGAATTCTCACATCATTTTGTACACTTACAACATGGTAATGCTGTAGGG
TTGAACTTGAACAGAACGGGCACTTTGCAAAACAAAACTGACTCAATCGATACCAGCAGGAAAGGTTGGCACCAACAAGC
CAAGCCATGAACTCTAC-----------------ACCGCATACTCTGTTCGATTCGATGTCTCTCGTCTCTGCTTTTCGT
AACCGGTGTCCACTCGTCCCTTTCTCCTTTCAGTTTTCTCTTCGGT----TTGGCCGTGTCCTTTTCGTCACATCCTGGG
ATTGGCTTGTCTCTCTCTGCATCATGGCGCATTTCGGCTGCGGCTTGGCTGAGTAAGCTCTGAGGCTAGGAGCGGCTTGT
CAGTAAAAACGTACGC--------------------------GAAATAAACAGAGTGCCTTCCACGATGAAGTAAATCAC
ATCAAAATATTGGATGTGAGTTATAGTATAAGACATGTTGGGTTCTAATAATAGAGAAAATAATCATAAGAAATCTTGAT
C-AATCACACCCCCTTTGCGTTTGTGGGTTTTCAGATGAACCTTGAGAGCTGAAGCTGGACAGATGAGAGAGCAT-----
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>chr3B_27
TGAGTT---------------------------AGCGAAAAGAGAGCGTAGATGTTATGCTAGGACAAGCGTGAGGTGGA
AATGATTGAGAGGCCATTGTTAGATGCATGTAATTCAACAAATCTCACAA-----AAGAGTGCAAATTTTGGCTCGTCGA
AAGGAGAAATGTAGGGTTCATTGTTTTTCTTC------------GTTATTTATGCACTTTCTCACTCAAAATACAT-ATT
TCAAATTCAACTCTCTTATTTCTATTTATTTGCACCTACAACGTCTTCGTGTGCTTCAAATTACATGCGTCAAACTAGGC
AATTGC--GTCATTGCAAAAGAAAAATAATTA---GGTAATTGCCGAACCAAAGGGTACTTG------------------
--TGTTTGAAAT-GAGGCAAACCACGCCTAGTTGTTTCATACAAAAAAAGTAG-------GTTTATTTGAAAAAATATGG
CCAATCTAAACTTTATCGACTTGTGAAATTGAGGCACATCTCCTATCTCTGCTTAAAAAGAAGTTAAT-TCTTTCAAAGT
TTCTACACTACAAAGTTTAGCCAACACATCATC-TTTTGAGAAATTTCACTTGTTTATTTTTTTGGTGCAACCTAAACAA
TTGCTATTGCGTATTTATATGTTTATTTTTGTTTGTAAAGATGTAACATCACATCCCAATTAGGGGTATTTGGTTTCTAT
ATATTCATGCATCATTTGCATAATTGCAAGCTGTTTTTCTCTGGCGGAAAATCATTTGCATACTGCTAGTACTAATTAAG
TAGGTGCTCACT-ATCAGCGTATCACAGAAGCT-----------------------------------------------
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--------------------ACTCCTCCAGAAGTTTCCTACTGCCATCCCGCAAAAAAAAGAAAAGAAGTTTCCTACTGC
CATTGTTATCTCAATCCAAACAAGATTATATTGGAGTACACGATAACGCCGTGACACTGAGTCACTGACACGACACCCCA
AAGACCAAACCGCT-CCGCCGATCA-----CACCCCAGTCCAATCCAAAATTTCCTATAAAAAGACCCCAAAACCCTCTC
ACTTGGCACCACTCGACCAGAGTCCACAGTCCACAGTCCATAGTCCGTCCACAGTGTACTGACCAAGTAGT----GCTC-
-AGAATTCAGGGAGC-------------------CCACCGCCATGGCTTCCCCTAAGCTTCTCCTCCTGCTCGCCACCCT
CCTCCCAAGCTGCGGCCTCCTCCTGGCGGACTTCGCCCCGATGACCCTCACCGTGGTGAACAACTGCGCGTACCCGATTT
GGCCGGGCATCCAGGGGAGCGCCGGCAGCGAGGTCCTGGAGGGGGGCGGCTTCTTCCTCCCG-TCGCTCTCCCACCGCTC
CTTCCCGGCGCCCACCCACGCCTGGTCCGGCCGCATCTGGGCGCGCACCGGCTGCACGCCTGCA------GGGGCCGGGC
AGCTCCGCTGCGCCACGGGCGACTGCGGCGGGCGGCTCCAGTGCGGGGGCCTCGGCGGCGCGGCGCCCGCCACGCTGGCG
CAGGTCTCCCTCCACCAC---GGCGGCGACGACCAGTCGTCGTACGGGGTGAGCGTGGTGGACGGCTTCAACGTGGGACT
GTCGGTTACCCCGCACGAGGGCCGCGGCAACTGCCCCGTCCTCGCCTGCCGCAAGGACCTGACGCAGAGCTGCCCCGGCG
AGCTGCAGGTGCGCGCGGCGGCG------GGCGGCGGCGTGGCCGCGTGCAAGAGCGGCTGCCTGGCCTTCGGCACCGAC
GAGCTGTGCTGCCGCAACGCGTACAACAGCCCGGCCGCCTGCCGCCCCTCCAAGTACTCGGACTTCTTCAAGAACGAGTG
CCCGCAGGCCTTCACCTACGCGCATGACAGCCCCTCGCTCACCCACCAGTGCTCCGCGCCGCGCGAGCTCAAGGTCATCT
TCTGCCACTAGACTAGAGGTAGTCCA----------GCGGCGCTCGCGGTGCCGCCGC---CGGCCGTCAGCAGCTAT--
---GTCTGGGTCTGGGATCGATGTGGTGTAGTGCGT----GTCATCTCATCTGTCATGTGTGAGTG----TTCGATTAGG
CTTTGGAGACTGCCAGGCTGACCGGAGTGCTTGGTGTAGTTCGTGCTCTGTAGGCGTTCACCTCTCGTCTAGTAGTATGG
TGTTAGCTGCTCTGATTCCAGTCTGAAATAAC------------------------------------------------
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--------------------------------------------------------------------------ATGTTT
AGATGGGCATTGATCTGATCACATG-----------TTTCAATCACGCCTTTTGTGCATTTGAGTTCAACTCCCTTTTCC
CCATTTTTGCTCTTAACACATGGCAAAATCTC-----TGTGCAATAGCAACATGTGTAAGGCAGATCTGCTGCA------
-TTCACGCCACTGCTCTACATGTATGGGACGTGAATTCTCATATCATTTTGTACACTTACAACATGGTAATGCTATAGGG
TTGAACTTGAACAGAACGGGCACTTTGCAAAACAAAATTGAATCAATCGATACCAGCAGGAAAGGTTGGCACCAACAAGC
CAAGCCATGAACTCTAC-----------------ACCGGGGGGAC--------TCGATGTCTCTCGTCTCTGCTTTTCGT
AACCGGTGTCCACTCGTCCCTTTCTCCTTTCAGTTTTTCGTCAGATTAGGTTGGCCGTGTCCTTTTCGTCAGATTCTGGG
ATTGGCTTGTCTCTCTCTGCATCATGGCGCCTTTCGGCTGCGGCTTGGCTGAGCAAGCTCTGAGATTAGGAGCGGCTTTT
CAGTAAAAACGTA-------------------------------------------------------------------
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>chr3D_613
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-----------------------------------------------------TTTAGTTTGTAA---------------
------------------------------------AAAGATCTCACGTCACATCCCAATTATTAGGTTTCTA---CTAT
ATATCTATGCATCATTTGCATGCTGCT------TTTTTTTCTAGCGGAACATCATTTGC---------------------
-AGGTGCTCACT-ATCAGCGTATCACACAAGACACAAGCTACTCCTCCAGAAACCCATCTGATAGCCCCCTCGCCTCGCC
TCCCCCTTGGCGATGCCAGGGGCCCCGAAACCCTAGCGCCGCCAGCACCCTCTAGCGCCTCCTCCTGCCGCCGGCGTGGG
CCGCGGTGGCGGCGGGCCCGGTGCCGGACGCGCCGGATCTCATCTAAGGCGGCAGGGGCGGCTCCTCTTGTACAATCCGA
AGGGGGCGGCTGGGGCGGCGACCCCGTGCGGCGATGGCCGAAGCACCATAGCCGGCGGAGCGGCGGCCCTCAATGGACGG
CGGCGGTGGCAGCGCCCCATCCGGCGGGGTGGGCTGTTCTGGTCGGGATGGTGATGGCGGTGACTGCGGATCCAACGCCC
CGATTGGATCCGTCACGGGGAGGCCTTCCATCGACCAGCGACGCGTGGAGGGGCCGGTGAGGAGATGCCGAATCTCTGCC
GGAGTACCGACAGCGACGTACGTCTTCGCGGCAAGGTTCTGCTCGGTTCCAGCCAGCCGCGAGGTTGGGAAGACGTGGCT
TCCGGTGAAAATCGCGCCTGGCTGCGGTCTTGGCGGACGATGGCGGCGTCTCGGACGTCGTTCCCTTCTCGAGGCATCCT
CGTTGCAGGTCACGCCAACCTGATCGGGAAGTTCCGGGGGGGGACCCTAGATCCGGGTCTACCGGATCGGACGATGACGG
TGCCTTCGGTGTCGTTCTCCCTTCTGGGGGCATCGTTTGGAGCAAGTGCTGGTTGCAGGGGACAAGAGGAGGAGCGGTGT
TTCATCTTGCCCATTGATGACGGCGGATCTCGGCGGCGTGGCGCAGTGGAGACTCGGCGCCCGATGAGCGGAGATGGACT
CGCGCAGGAGGGTGACGCTGCCTGGCGTCGTGGTGGCGTCGGCGGCAGCTAGACCGGGCAAGGTAGATGCAGTTGTACAA
CTCTGAAGATGGATTGGTGGCACGTGGCTGCGGCGGTCTCATACCCGGCAGGCGTCCTCGTTGAGGAGCACGCCGGACTA
GTGGGTGCCCATACCCGGCAGGCGTCCTGGTTGGGACCTCAAGTCTTAGATGTTGGGTTTGGCTGCAAGGTCTGTTTGGT
ATTAGGCCTAGACTTTCAGCCCCCCTTTTCAACTGGATAGGAGTAGCGACAGATGTTGCTTAGACGGTGGCTTTACTCTT
ACTGTTGTATGACTTTGTAAGGTCTTGTGTCAATAATTAATAAAATGGTTGTATGCATCGTCCAGATGCAGAGTCCGGGA
TCTTCCTCCTTTAAAAAAAAACTCCTCCAGAAGTTTCCTACTGCCTG---------------------------------
---TGTTATCTCAATCCAAACAAGATTAT------------------------------AGTCACTGACACGACACCCCA
AAGACCAAACCGCT-CCGCCCATCA-----CACCCCAGTCCAATCCAAAATCTCCTATAAAAAGACCCCAAAACCCTCTC
ACTTGGCACCACTCCACCACA-------------------------GTCCACAGTCTACTGACCAAGTAGCTAGCGCTC-
-AGGATTCAGGGAGC-------------------CCACCACCATGGCTTCCCCTAAGCTTCTCCTCCTGCTCGCCACCCT
CCTCCCGAGCTACGGCCTCCTCCTCGCCGACTTGGCCCCGATGACCCTGACCGTGGTGAACAACTGCGCGTACCCGATCT
GGCCGGGCATCCAGGGGAGCGCCGGCAGCGAGGTCCTGGAGGGGGGCGGCTTCTTCCTCCCG-TCGCTCTCCCACCGCTC
CTTCCCGGCGCCCGCCCACGCCTGGTCCGGCCGCATCTGGGCGCGCACCGGCTGCGCGCCCT---CCGCCGG---CGGGC
AGCTCCGCTGCGCCACGGGCGACTGCGGCGGGCGGCTCCAGTGCGGGGGCCTCGGCGGCGCGGCGCCCGCCACGCTGGCG
CAGGTCTCCCTCCACCAC---GGCGGCGACGACCAGTCGTCCTACGGGGTGAGCGTGGTGGACGGCTTCAACGTGGGCCT
CTCCGTGACCCCGCACGAGGGCCGCGGCAACTGCCCCGTCCTCGCCTGCCGCAAGGACCTCACGCAGACCTGCCCCGGCG
AGCTGCAGGTGCGCGCCGCGGCGCCCGGCGGCGGCGGCGTGGCCGCGTGCAAGAGCGGCTGCCTGGCCTTCGGCACCGAC
GAGCTGTGCTGCCGCGGCGCGTACAACAGCCCGGCCGCCTGCCGCCCCTCCAGGTACTCGGACTTCTTCAAGAGCGAGTG
CCCGCAGGCCTTCACCTACGCCCACGACAGCCCCTCCCTCACCCACCAGTGCTCCGCCCCGCGCGAGCTCAAGGTCATCT
TCTGCCACTAGAGTG-----AGTCCA----------GCGGCGCTCCAGCCGGTGGGACGCACGGCCGTCAGCAGCTAT--
---GTCTGGGTCTGGGATCGATGTAGTGCAGTGCGT----GTCATCTCGTCTGTCATGTGTGAGTGAGTGTTCGATTAGG
CTTTGGAGACTGCCAGGCTGAGCGGAGTGCTTGGAGTAGTTCGTGTTCTGTAGGCGTTCACCTCTCGTCTAGTAGTATGG
TGTTAGCTGCTCAGATTCCAGTCTGAAATAACGAGCATGATTGGTTTGATGCCAAAAGTTGGCATGTCAATATTTGGCAA
ATGCCAAATGTTGTCTAGTGATTGGTTGGCTACCACCTTTTCTTCTCAACCTCACAAAAAGTTGCCAACATTTGGCAAAT
TCTGATTTTGCCAAATGTTGGCTTGCCAAATATTGGCAATGCCAATTGTTGGCATCAAACCAATTATGTTCAACATGTTT
AGACGGACATTGATC-------------GACCATGTTTTCGGCCACTTCTTATGTGC-TTTGAGTTCAACTCCTTTAATT
TTCCCTC-------------------------------------TAGCAACATGTGCAAGGCAGATCTGCTGCT------
-CTCACTCCACTGCTCTGCACAGCATA----------------------------------------TAGTGCTACGGGG
CTGAACTTGAACCGAATTTGATGT------------------------------------------------CAATAAGC
CAAGCCATGAACAATGCCCCTGGCT--CTCGAGTACCGCATACCCTGTTCGATTCGATGTCTCTCGTCTCTGCTTCTGGT
GACCGGTGTCCATTCGCCCCTTTCTCCTTTCAGTTTTCTCTGCGGT----TTGGCCGTGTCCTTTTCGTCAGATCCTGCG
ATTGGCTTGTCTGTCTCTGCATCATGGCGCATTTCGGCTGCGGCTTGGCTGAGTAAGCTCTGAGGTTAGGAGCGGCTTCT
CAGTAAAAACATAAGCTCGTTAGTTTGTTTTCTACTCTACGTGAAATAAACAGAGTGCCTTCCATGACGGAGTAAATCAC
ATCAGAAATATTTATATGTAAGCTATGGG----------GGGTTCTAATACTAGAGAAAAGAATCGTAAAAAATCTTGAT
AAAATCGCATCCCCTTTGGCTTTGTGGGTTTTCAGATGGACCCT--GAGCTGAATCTGGACGGTTGAGAGAGCATCGATG
TGATGCCGGTTTTTGTATAAGCTTGGACCACCCATGCTGGAGCCGGCCGGCATGCATACTGCATGGATGGGTAAAGGCAT
TGTAAAGGCAGCATGCATGGCACTAGCATGACTGCAGGACTGCACTGCACGCACAACTGGCTACTACCATGAAAAGTGTT
GTTTTTCGATTTAGACTAGTCATGCTTCAAGACATCTTTTTATACATGTTTAACATTTTTCAAATACATGTATAATATTT
TTTTCAAATATATGTTTTGATGTATATTTTGTCATACACATTATAAGTTTTTATATGCATCTAAAACTTTATTTTATGTA
CATTTAGGATTTTTTAAATACATGATTAACATTTTTTCAAATACGTGTTTTGAATTATTTTTTTAAATATGTGTTAATTT
TTTTAAATACACATTGAAACATTGTTATTAAAGTATAATGACATTTCTTTACATTGTATAAACATTTATGTAAATGTCAA
AACATATTTTTTGAAATGCGTGAAATTTTTTAAAATTTAATCTACTTCTACATTTTTTGAATTGTACAAAACAATTTTTT
ACTGCACGTCCACGAATCGGGGGGAAGTTGCACATCGACGGCTAGACAGTTGAACCAAACGGTGCCTAAATTGCACACAA
AAAAGATTGTCAGAACAGACGCATATGGGATCTAGTTTCTAAGAGAACGTCGCGAGGAATCTAACGATGAAAACGGATCT
TAATTTTGATATTCAATTCAAAAGTTATGACATTTTAAAAGAAATTGAACTCCAAATTAAATGCGTTACACATTTTCCAT
GGGTATTTTCTAATCTTTCTTTCAAAACATGTTGCATGATGCTTTTCCTAGCTAATAGGACATAACCTTTCCTAATTTGT
TTGATGAGGACAGAAACTTACTAAAAGAGGAAGGCGGCCGCTCGCTAGACGCGTCCTTCTTTAGCTAAGTTGTAAATTGA
AGGTAGAATTATGCATGTTTGTAACATATGGCAATTCATTAGGCATCATAAATGATCTTCTCCTCATATTGTATTCTCCG
CTTGCCTAACTGTAGAAGGTAGGTTGTTGCCTCATAGATCTCGGCTGTTGATTAGATGAATCCCTCCCAGTGTATAAGAT
CATCACGGCAAACTTCACATATGCTTAGAGTTGAAAGGAAGTATGATCTGAGAAAAGCAAGACTATAAAGCTTTAGTGCC
AGGTGCAATCAACATAAGATTCTGTCACCTCTCATGTGACATGGAAATTCTGAACTGCACTGCAATAGAAGGAACCACAA
TGGTTTTAGGAACTCAATTTAGCATTTTAACGAGATATCCAAGAGAAGATGTGACTATAGGCTCTGGTATACAACCACTA
TTTGCATTGATGTTGGAGTGGATGAGAGAAAATTAGGATCAACATCACTTAGTATTTTGTCACTTGCTCTATACTTTATG
GTGGTACTGTCTTCACTTCTTAGTTCCGGGTATGTGAAATTCCGTCATAGATTTATGATATATGTATTCTTGTATTGCAT
CGGTTTCAAATCTGTAAGGTTCCATCCTAATTTTTAGTAACTTTAGCATTATATAGAGGCGTAAATGTTGAATCTTTATT
AGTAAGATACATGACATTTTTGTAATCACTGTTCGATATTGAGATTATTTCCAAAATGTTGTTCCGTGCAACAGCTGCTT
CCGAATATCTGACATTATAACATGGTTCCAGCCAATATTAGTGTTGCATAACTGTATTTATGCTAACCTGCCCATTAGTC
AAATGTGCTCCCTCCGTTCCAAAATATAAGATCATAGTGTTAAAATGATCTTACATTTTTTGACGGAGGGAGTATCTTTC
TCTGTTACGTGTTGTGCCATCATTACGGTTTATAAAATTATAGTTTCGGTGCATTGTATGCGTTTCAATATATGCTGATG
CAAAATTTTATGTTTCAAACCAGTGCATCTCACAAAGTTTGAGGCCAGGTTGTGGTAGTAAAGTTTGTAAATTCTGAATA
TGATGAGGTATTATTTTGCTTTTTTACCTAAACATTTGTGTTACTTATATGTCAACAACAAAAGTTCATACAGGCGTGCG
GCTGCCACCCAAGCAACAAACATGAATATGAAGACACACACACATGGCATCGAGGAGCACCCATCAACATCTAAAGCAAA
ACAAGGAAATTAAGTATTGTAGCTACACGATAACCAGCGATGAGCCAATATGGGAGCGGCGCTTCCACCCCTCTAGTTAA
TTAACAATAGTGTTATGAAGTATGGACTGTTTCACACGCAAGGAGACATCACAGAGTTGTAAATCGACATAGCACAAAGC
ATCAAACTTCCGGGAAACAGAGCACACACTGGACACACAGAGGATCACGTAGAGAACTTGAAATATGGGAACAAAGGGTA
CAAAGGATCATGCTGCGAACTAGTGTCACAGACCGAAGCAATGGATCTCCACAGCCAGGTGTGGGGTTGCATCTCCTCCG
GCGTTTGCGTCTCCTCCTCCAGCGTTTGGGGCGCCTACTCTTGCGCCTCCTCCCCCGGCAGTTGCCTGCACAACAAGAGT
GTTCCGGGCATCAAAGATGCTACTCAGCCAGCAGGAACCGACGAGAAGGGCACCGATCACCATGGCAACCATCATCTCCA
CAACATCTCTCACCTTCACTGCCGGCATTGGCTTGTCCTTCGAGACGGGTGGACACACACATGCCCCTGCAGCCACCACC
GGCACCAAGAAGACTACAAGGCGTGGAGCCAGGAAGTTTTGCCAATGGGTTCACTAAGAATTTGGGCATGAACTAACTAT
TGTGTGTAGTGGCAGCTAATAAATCCAGGCTAAATCCGACAGTATGTACATATCTCTACCTGGGATTATTTTTACAACCT
CATACTAACATGCCGCTGCAGCCACCACCGGTACCAAGAAGGCTACAGCCACCACCTTGCTCGTCCGAGCACCCATGACT
TTGCCTTCCTAGCTATCACCTGATGGCTGATGTCTCTGTTCTATGGGTTATAAGTGAAAGTAGTGAGGTACGTTTTGGGT
AGCCTTCATCGTGAAGGGTGGATCCACAGCCCCATACAAAGCCCTATTCCTTCACCATTCTGGTAGTTCCAAAAGAAAGA
AAAACTACGCTCTTTGCTTCGTATACAATCTATTATGTGTGTGATTTTCGTGAGATGGTAGTACAACGTATGGAGCAACT
CCAATAGCTTCTATATCCGAAAAAAAATTACTGTTTACAAAGAGTTGAGGCATAAATACTTCATCCAACAGCTTTCTTAA
ACCTAAAAGTTTTTTACGGCATCTCGTATAATTGCCCCCAACTCCCCTCACATTTACGGGAAGATGACTCTTCACCTATA
ATTTGACGGGCATCAAACCGCCAGAACTTGAAAACCCTCACACCGCCATGCAGCCGCCACAGCACTGCGCCACCGATGCC
ACGCAACCGCTACATCAGGCCGCTGCCGCACCGCCCGACGCCACTGCTCGTCGACCAGTCACACATGACACTGACTTGTG
GGCCCTAGGACATTAGCTGGGCTTGTTTAATAAAAATTAGGAGAAGATGTTTACGGACTTCTTCAAGAGCGAGGGCCCGC
ACGCGCACGACAGCCCCTCGCTCACCCACCAGTGCTCCGCGCCGCGCGAACTCAAGGTCATCTTCTGCCACTAGAGGGAG
TCCAGCGGCGCTCGAGCCGGTGGGACGCGCGCCGCCGCCGCCGTCCGTCGGTGGTTATCTCTCGGATCGATCATGTAGCG
TAGTGTGTGTCATGTCTGAAGTGTTCGAGTACCTTTGGAGACCGTCAGCCCGGAGTACTCGGTGTAGTAGTGGTTGGTTG
TCTGTAGGCGGCTCTCGTCTTGTCTAGTGCTATGCTGCAGTGATGTTGTTGACTGCTCGGATTCCAGTCTGAAATAACAT
GTTTAGATGGGCATTGATCTGGTCACTTGGTCGACAATGTTTTCAACCACCTCTGTGTGCATTTGAATTCAACTCCTTTT
CCCCAATTTTCCCTCT
>chrUn_1168
CTTCT---------------------------------------------------------------------------
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---------------------------------------------------------TCCTCCTCTCTCCCCCACCGCTC
CTTCCCGGCGCCCACCCACGCCTGGTCCGGCCGCATCTGGGCGCGCACCAGCTGCGTGCCCA---CCGGCGGGGCTGGGC
AGCTCTGCTGCGCCACGGGCGACTACGGCGGGTGGCTCCATTGCGGGGGCCTTGGCGGCGTGGCGCCCGCCACGCTGGCA
CGGGTCTCCCTCCACCAC---GGCGGCGACGACCAGTCGTCCTATGGGGTGAGCGTGGTGGACGGCTTCAACATGGGCAT
GTCAGTGACCCCGCATGAGGGCCGCGGTAACTGCCCCGTCCTCGCCTGCCGCAAGGACCTGACGCAGACCTGCCCCGGCG
AGCTGCAGGTGCGCACGGCGGCG------GGCGGCGGCGTTGCCGCGTGCAAGAGCGGCTGCCTGGCGTTCGGAACCGAC
GAGCTGTGCTGCCACAACGCGTACAATAGCCCGGCCACCTGCCGCCCCTCCAAGTACTCGGACTTCTTCAAGAGCGAGTG
CCCGCAGGCCTTCACCTACGCCCACGACAACCCCTCCCTCACCCACCAGTGCTCCGCGTCGTGCGAGCTCAAGGTCATCT
TCTGCCACTAGAGTTGAGT-------------------------------------------------------------
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>chr2B_1168
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-------------------------------------------------CTTCTTCCTCCTCCTCTCTCCCCCACCGCTC
CTTCTCGGCGCCCACCCACGCCTGGTCCGGCCGCATCTGGGCGCGCACCAGCTGCGTGCCCA---CCGGCGGGGCTGGGT
AGCTCTGCTGCGCCACGGGCGACTACGGCGGGTGGCTCCATTGCGGGGGCCTTGGCGGCGTGGCGCCCGCCACGCTGGCA
CGGGTCTCCCTCCACCAC---GG---CGACGACCAGTCGTCCTATGGGGTGAGCGTGGTGGACGGCTTCAACATGGGCAT
GTCAGTGACCCCGCATGAGGGCCGCGGTAACTGCCCCGTCCTCGCCTGCCGCAAGGACCTGACGCAGACCTGCCCCGGCG
AGCTGCAGGTGCGCGCGGCGGCG------GGCGGCGGCGTTGCCGCGTGCAAGAGCGGCTGCCTGGCGTTCGGAACCGAC
GAGCTGTGCTGCCACAACGCGTACAACAGCCCGGCCACCTGCCGCCCCTCCAAGTACTCGGACTTCTTCAAGAGCGAGTG
CCCGCAGGCCTTCACCTACGCCCACGACAACCCCTCCCTCACCCACCAGTGCTCCGCGTCGTGCGAGCTCAAGGTCATCT
TCTGCCACTAGAGTTGAGT-------------------------------------------------------------
--------------------------------------------------------------------------------
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----------------
>chr2B_1168
CTTCT---------------------------------------------------------------------------
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---------------------------------------------------------TCCTCCTCTCTCCCCCACCGCTC
CTTCCCGGCGCCCACCCACGCCTGGTCCGGCCGCATCTGGGCGCGCGCCAGCTGCGTGCCCA---CCGGCGGGGCTGGGC
AGCTCTGCTGCGCCACGGGCGACTACGGCGGGTGGCTCCATTGCGGGGGCCTTGGCGGCGTGGCGCCCGCCACGCTGGCA
CGGGTCTCCCTCCACCACGGTGG---CGACGACCAGTCGTCCTATGGGGTGAGCGTGGTGGACGGCTTCAACATGGGCAT
GTCAGTGACCCCGCATGAGGGTCGCGGTAACTGCCCCGTCCTCGCCTGCCGCAAGGACCTGACGCAGACCTGCCCCGGCG
AGCTGCAGGTGCGCACGGCGGCG------GGCGGCGGCGTTGCCGCATGCAAGAGCGGCTGCCTGGCGTTTGGAACCGAC
GAGCTGTGCTGCCACAACGCGTACAACAGCCCGGCCACCTGCCGCCCTTCCAAGTACTCGGACTTCTTCAAGAGCGAGTG
CCCGCAGGCCTTCACCTACGCCCACGACAACCCCTCCCTCACCCACCAGTGCTCCGCGTCGTGCGAGCTCAAGGTCATCT
TCTGCCACTAGAGTTGAGT-------------------------------------------------------------
--------------------------------------------------------------------------------
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----------------
>chr2B_1168
--------------------------------------------------------------------------------
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-------------------------------------------------CTTCCTCCTCCTCCTCTCTCCCCCACCGCTC
CTTCCCGGCGCCCACCCACGCCTGGTCCGGCCGCATCTGGGCGCGCACCAGCTGCGTGCCCA---CCGGCGGGGCTGGGC
AGCTCTGTTGCGCCACGGGCGACTACGGCGGGTGGCTCCATTGCGGGGGCCTCGGCGGCGTGGCGCCCGCCACGCTGGCA
CGGGTTTCCCTCCACCACGGCGG---CGACAACCAGTCGTCCTATGGGGTGAGCATTGTGGACGGCTTCAACATGGGCAT
GTCAGTGACCCCGCATGAGGGCCGCGGTAACTGCCCCGTCCTCGCCTGCCGCAAGGACCTGACGCAGACCTGCCCCGGCG
AGCTGCAGGTGCGCGCAGCGGCG------GGCGGCGGCGTTGCCGCATGCAAGAGCGGTTGCCTGGCGTTCGGCACCGAC
GAGCTGTGCTGCCACAACGCGTACAACAGCCCGGCCGCCTGCCGCCCCTCCAAGTACTCGGACTTCTTCAAGAGCGAGTG
CCCGCAGGCCTTCACCTACGCCCACGACAACCCCTCCCTCACCCACCAGTGCTCCGCGTCATGCGAGCTCAAGGTCATCT
TCTACCACTAGAGTTGAGT-------------------------------------------------------------
--------------------------------------------------------------------------------
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----------------
>chr2B_1169
--------------------------------------------------------------------------------
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--------------------------------------------------TTCTTCCTCCTCCTCTCTCCCCCACCGCTC
CTTCCCGGCGCCCACCCACGCCTGGTCCGGCCGCATCTGGGCACGCACCAGCTGCGTGCCCA---CCGGCGGGGCTGGGC
AGCTCTGCTGCGCCACGGGCGACTACGGCGGGTGGCTCCATTGCGGGGGCCTCGGCGGCGTGGCGCCCGCCACGCTGGCA
CGGGTCTCCCTCCACCACGGCGG---CGACGACCAATCGTCCTATGGGGTGAGCGTGGTGGACGGCTTCAACATGGGCAT
GTCAGTGACCCCGCATGAGGGCCGCAGTAACTGTCCCGTCCTCGCCTGCCGCAAGGACCTGACGCAGACCTGCCCCGGCG
AGCTGCAGGTGCGCGCGGCGGCG------GGCGGCGGCGTTGCCGCGTGCAAGAGCGGCTGCCTGGCGTTCGGAACCGAC
GAGCTGTGCTGCCACAACACGTACAACAGCCCGGCCACCTACCGCCCCTCCAAGTACTCGGACTTCTTCAAGAGCGAGTG
CCCGCAGGCCTTCACCTACGCCCACGACAACCCCTCCCTCACCCACCAGTGCTCCGCGTCGTGCGAGCTCAAGGTCATCT
TCTGCCACTAGAGTTGAGT-------------------------------------------------------------
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----------------
>chr4B_2011
--------------------------------------------------------------------------------
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----------------------------------------------------------------------------GTTT
AGACGGACATTGATCTGGTCCCTTGGTCGACAGTGTTTTCAATCACGTCTTATGTGCATTTGAGTTCAACTCCTTTTCCC
CCATTTTCCTTCTTAAGAAACGGTAAAATGAAATCATTGTGCAAAAGCAACATGTGCAAGGCAGATCTGCTGCT------
-TTCGCACCACTGCTCTACATGTATGGGACGTGAATTCTCGTATCATTTTGTACACTTACAACATGGTAACGCTATACGG
TTGAACTTGAACAGAACGGGCACTTTGCAAAACAAAACTGAATCAATCGATACCAGCAGGAAAGGTTGGCACCAACAAGC
CAAGCCATGAACTCTACACCGGGGGGACTCGAGCACCGCATACCATGATCGATTCGATGTCTCTCGTTTCTGCTTCTGGT
AACCGGTGTCCACTCGTCATTTTCTCCGTTCAAGTTTCTCTGCGGT----GTGGCCGTGTCCTTTTC-TCAGATCGTGGG
ATTGGCTTGTCTCTCTCTGCATCATGGCTCCTTTCGGCTGTGGCTTGGCTGAGTAAGCTCTGAGATTAGGAGCGGCTTTT
CGGTAAAAACGTA-------------------------------------------------------------------
--------------------------------------------------------------------------------
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----------------
>SNPs
---SSSSSSSSSSSSSSSSSSSSSSSSSSSSSS--S----------S---SS-S--------S-------SSS-S--S--
-------------S----S-S--SS-SSSSSSS--------------S--SSSSS-----------------------S-
---SS---------SS----S----S--SS-SSSSSSSSSSSSS---------------S------S-------SSS---
------S---S------S---------------------S--S------S----S---S-----------------SS-S
S-S-SSSS-----------------SS--SS-SSS------S--S--S-----SSSSSSSSSSSSSSSSSSSSSSSSSSS
SS----------S------------S---S-S-----S-S-SSS-SS-SSSSSSSSSSSS-------S---S--------
-----------------------S-S--S----------------S--------S----SS-SSSSSSS----------S
--SS--SSS-------S------S---------S------S---------------------------------------
--------------------------------------------------SSSSS----S--------------------
--------------------------------------------S-S---------------------------------
---S--------S---------------------------------S---------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
-------------------------------------S-S----------------------------------------
--------------------------------------------------------------------------------
--------------S----------SSSSS--------------------------------S---------S-------
--SS-S------SSS---------------------------------------------------S---------SS-S
S---------S----SSSSSSSSSSSSSSSSSSS-------------------------------------S--------
----------------------S-------------S-------------------------------------------
--------------------------------------------------------------------------------
----------------------------------S----------------------------SS-------------S-
--------------------------------------------------------------------------------
-----------------------------------------------S-----------------------------S--
------S--------------S----------------------------------------------------------
------------S--S----------------------------------------------------------------
--------------------------------S-----------------------------------------------
--------------------------------------------------------------------------------
-----------------------SSSSSSSSSSSSS-----------S------------------------------SS
SSS---------------------------------SSSS-----------S--------------------S-------
------------S-------S----S-------S---------------------------------------S------
-----------S--------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
-----------------------------SS--------S----------S---------------S--S----------
--------------------------------------------------------------------SS---SSSSSSS
S---------------S------------------------S--------------------------------S-----
-----------------------------------------S--------------------------------------
-------------------------------------------S------------------------------------
-----------------------------------------S-----------------------------S--------
-----------------------------------------------------------------S------------S-
-------------S--------------------------------------------------S--S-S----------
----S--SSS-SS--S--SSSSS--SSSSSSSSSSSSSS-----------S---------S----S---S----------
S-----S--S--------SS------------------S---S-SS--------S------S-S----------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
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--------------------------------------------------------------------------------
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--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
----------------
>forward_299
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
---------------------------------------CACATCTTCGCGTGCATCAG---------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
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--------------------------------------------------------------------------------
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--------------------------------------------------------------------------------
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--------------------------------------------------------------------------------
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--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
----------------
>reverse_3839
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
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--------------------------------------------------------------------------------
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--------------------------------------------------------------------------------
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--------------------------------------------------------------------------------
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--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
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--------------------------------------------------------------------------------
------------------------------------------------------------------------------CA
GTTCACACCACTGCTCGA--------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
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--------------------------------------------------------------------------------
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--------------------------------------------------------------------------------
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--------------------------------------------------------------------------------
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--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
----------------
