>input_sequence_69668
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---------------------------------------------------------------------------ATGGA
TCCAGCCGAGGGCCGAAGGATACTGGTGGCCGTGGACGAGGGCGACGAGAGCGTCCACGCGCTGCGATGGTGCCTCACCA
ACTTCGCCGCGCGCGGCGACGGCGAGCTTGCCCCA-CCGGACACCATCCTCCTGCTCTACGTCCGGCCCACGCCGCCCAC
CTACTCCGTGCTCGACGCCTCCGGTACGTACGTTCTG--TCTTCACGAAGCGATCCTACGCTCATCCCGGCGTCGGGGAC
TAACCGGCCTGCACCGTAAGCCCCGCTAGGCTATATGTTTGCCAATGAGGCGACCGCCGCGATCGACGGGTACAGCCGGG
CGGTGGCGGACGCGGTGGTGGACAAGGCGCAGAAGCTCTGCGCGCTCCACAGCAAAGAGAACGGC------AAGGTGAAG
GTGGATGTGAAGGTGGCGGTTGGGGACGCCCGGAGCGTCATCTGCGACATGGTGGACAAGCTCGGAGCCGACCTGCTGGT
GATGGGGAGCCATGGCTATGGCTTTCTCAAGAGGTACGTAATTCTTTCTGACTTCTGTACTATGCCACACGCTGCACTCC
AGGCTGCAGTGAGACCAGCGGGATTGCTCAACTGATAATTACTTGTAGCTATTCTAATATGT-ACGCCACTTCAGGTTCC
TGTCAGAGTAG--------TGCTCGTGTGACCAAGAATTCTCGTTGGTTTTGCAGGGCTCTCCTCGGGAGTGTCAGCGAT
TACTGCGTCAGGAACGCCAACTGCCCCGTTCTCATCGTCAAGTCGAAATAA-----------------------------
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>chr4A_1_TraesCS4A01G119400
ACCGTGTGTCCAAATCTTGAACCATTTTAACCATTTGATTCCTCGTGTCGAGGTCTTTAAAATTAGAACCCATTTGATAG
GCTTCGACGAGCTTTTTTCATAAAA--AATGGACGGAAAAGCCACAACGGGAACATTTTTTTCCTTTCCGAAAGCAGATT
CCAAGAGGCACAGCCATATCTCTCCCGGAGGAAAAAAGAAAACTAATTTTGTTCGTTTTCGAGAGGCACGGCCTCTCGCA
GAAGCAAAAAAAA---TGAATAATTAAAAAGCGTG-----------------TTTTTGACTTTTTTATCAAAAAGCAAAG
AAAGATCGAT-AAAAACCGAGAAGAAAAAACCATTTAAAAAGCCAAAAACATGTGCCAAAAAATAAATAAAAATAAAATC
TGAAGGGAGTACCTAAAACGTGACACGTGACGACGGTTGAGAGCATGGCGCCACCTCAAATGACCCTTGGGTAGGCTTCC
GTAGAAGCGCTCCTCGATTAGTTTTTTTTTAGGCAATCTCCTCGATTAGTTGCTCTTGCGAGATACTGCTCTGGCGCAAC
ATAGCCCGTTCCAAGCGAGTCCTAGAACATACACACACATACACGCG-----TCCCGTGTCATCCGAAAACCAGGCACAC
GGACACGGAGTGTCGACACTGGCGGCCTGCCGCAACTGAGGGCGTGTCGACAGCGCGCGATGTGCCGCCGATTACC----
TTAAACAAGTCCAGCCTCT---CTCTAGACACGAAGAATCCAGATCCCTGATCCCTATCCAGAAAAAGACGGGGCCCACC
TGTCAGCCTTCCACGCTGCAAACCCCGGCGCCACGCGACCTGCCAAAAACCACGGGTAGCAGCTCCAGTTCCACCAAAGA
ACCGCGGATTCGAGTCCCCAAACCGCGAGCCATCCTCACGGTCACCGTGCAACATACTCCTATAAACCTTCGCGCCTGCA
CACAGCACTTCAACAAATCTCCATCAAGAAAGTGTACCCATCGACTCACAAAGCATAGACGAGTGCGAAGAAGAGATGGA
TCCAGCCGAGGGCCGAAGGATACTGGTGGCCGTGGACGAGGGCGACGAGAGCGTCCACGCGCTGCGATGGTGCCTCACCA
ACTTCGCCGCGCGCGGCGACGGCGAGCTTGCCCCA-CCGGACACCATCCTCCTGCTCTACGTCCGGCCCACGCCGCCCAC
CTACTCCGTGCTCGACGCCTCCGGTACGTACGTTCTG--TCTTCACGAAGCGATCCTACGCTCATCCCGGCGTCGGGGAC
TAACCGGCCTGCACCGTAAGCCCCGCTAGGCTATATGTTTGCCAATGAGGCGACCGCCGCGATCGACGGGTACAGCCGGG
CGGTGGCGGACGCGGTGGTGGACAAGGCGCAGAAGCTCTGCGCGCTCCACAGCAAAGAGAACGGC------AAGGTGAAG
GTGGATGTGAAGGTGGCGGTTGGGGACGCCCGGAGCGTCATCTGCGACATGGTGGACAAGCTCGGAGCCGACCTGCTGGT
GATGGGGAGCCATGGCTATGGCTTTCTCAAGAGGTACGTAATTCTTTCTGACTTCTGTACTATGCCACACGCTGCACTCC
AGGCTGCAGTGAGACCAGCGGGATTGCTCAACTGATAATTACTTGTAGCTATTCTAATATGT-ACGCCACTTCAGGTTCC
TGTCAGAGTAG--------TGCTCGTGTGACCAAGAATTCTCGTTGGTTTTGCAGGGCTCTCCTCGGGAGTGTCAGCGAT
TACTGCGTCAGGAACGCCAACTGCCCCGTTCTCATCGTCAAGTCGAAATAACAGGGCGAACTGTTCTTGGGAGCG-----
-----------------ATGTGCTATTTGGCATTTACATCTAATGCAATGTCAAAAATGCTCTTATATTATGGGACGGAA
GGAGTAGTCTTTATTATGCCTTCTATTTTCTTCATTCACTTTTGCTTCTTCAT-GTGTAACCTGCTAGAGGAGCTAAGGG
GAAGTGTCAAGCAATGTCTCTCAAGATGCCCGCGACTTGTATATATGCCGCTGTTACTGCTCGGTTATCGGTTGAATTTA
TCTTATTAGACATGTTATTTAGCAGCTTGTCATACTTTCATCGGTCGGAATCGACTCAATGCACTTCTATTCTGAACTGT
ATGTGGAACACACGAACAAGAAGACAGATTGTGCCGACAAAAAACAGTCCATTCACCAGTCATCCCTCACAATATTCTT-
-------------------------------------------------------------CTCTTTTAAACGGAGGCAA
ACGTTTCGTCTCAATGATTAATTAAGTAGAAGAGAATTACCTTGTTGATTATG---------------------------
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-----------------------AAAATCGGGCAAAAACCAGAGTAGACATACCACAACGAAC-----------------
---TACTTACACGACATTAAACCCCACGTCCGCACAGGGAGCCCACGAGACGCTCTCAACACACATAGTACCCCCTAAGC
GCGACAGTGGAGCGTGCAAGAAGATAACATTCATAAAGAATAACGTGGCAGTGGAGCGTGGGTTGTAGCTGCCCAAGGTG
GCCGGTGGAGGGCGACAACCCTTTTATGGAAGGCGGCCATGCTGGCCTACCCGGCGGAGAAGGCGTCGGAGCTGATGGCT
TCAACGGTATTTTCTTTCGTACTTGTAGAAGTGTATGCTCTAGTTAATGCAACCAAAAAACCGATCTGATAGAAGAGACT
AGGCAGCACATTAGTCTTGAACTTAAGACATCTTGGCTCTCATACCATGCAGAAGTGCATGTTCTAACCAATGCAACCGA
AAGACTGATCTGATGAAAGAGACTAGGTAGCACATTATACATCAACATACTAGGACATAATCAAGGAAGAGATCATAGAT
ATTTTT
>chr4D_1
ACCGTGTGTCCAAATCTTGAACTATTTTCACAATTGGATTCCTCGCATCGAGGTTTTTAAAACTAGAACCCATTTGATAG
GCTTCGACGAGCTTTTTTCATGAAAATAATGGATGAAAAAGCCACAGCGAGAGCATTTTTTTCCTTTACG----------
---AGAGGCACGGCCGTACCTCTTCCGGAAAAAAACTTACTTTTTG--------GTTTTCGAGAGGTGCGGCCTCTTACA
GAAGTAATAAAAACGATGGATAATTGAAAAGCCGTGCCTGTCACATTTTTTTTTTTGAATTTTTTTATCGAAAAGCAAAG
AAAGACCGATGAAAAACCGAAAAGAAAAATATATTTTAAAATCCGAAAACACGTGCGAAAAATAAATAAAAAATAAAATC
TGAAGAGAGCGTTTAGAGCGCGACACGTGACGGCGGTTGAGAGTATGGCGCCACCTCAAATCACCC-TGGGTAGGCTTCC
GTAGAAGCGCTCCTCGATTAGTTTTTTC-TAGGCAATCTCCTCGATTAGTTGCTCTTGCGAGATATAGCTCTGGCGCAAC
ATAGCCCGTTCCGACCGAGTCCTAGAACACACACACACATCCACGCGACGTGTCCCATGTCGTCCGAAAACCAGGT----
--ACACGGAGTGTCGACACTGGCGGCCTGCCGCAACTGAGGGCGTGTCGACAGCGGGCGATGTGCCGCCGATT-------
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>chr4B_616
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---CACCGAGTGTCGACAGTGGCGGCCTGCCGCAACTGAGGGCGTGTCGGCAGCGCGCGATGTGCCGCCGATTATTACCT
TTAAACAAGTCCAGCCTCTGGTCTCTAGACGCAAAGAATCCAGATCCCTGGTCCTTATCCAGAAGAAGGCGAGGCCCGCA
TGTCAGCCTTCCACGCTGCAAACCCCGGCGCCACGCGACCTGGCGAAAACCACGGGCAGCAGCTCCGGTTCCACCAAAGA
GCCGCGGAATGGAGCCCCCAAACGGCGAGCCATCCTCACGGCCACCGTGCAACGT------ATAATCCTTCGTGCAGTC-
----------CAACAAAACAACATCAAGAAAGTGTACCCATCGACGCACAAAGCATACACGAGGGTGAAGAAGAGATGGA
TCCAGCCGAGGGCCGAAGGATACTGGTGGCCGTGGACGAGGGCGACGAGAGCGTCCACGCGCTGCGATGGTGCCTCACCA
ACTTCGCCACGCGCGGCGACGGCGAGCTTGCCCCCCCCGGACACCAGCGTCCTGCTCCACGTCCGGCCCACGCCGCCCAC
CTACTCCGTGCTCGACGCCTCCGGTACGTACGTTTTCTCTCTTCACGAAGCGATCCTACGCTCATCCCGGCGTCGGGAAC
TAACCGGCCTGCACCGTAAGCCCCGCTAGGCTATCTGTTTGCCAATGAGGCGACCGCCGCGATCGACGGGTACAGCCGGG
CGGTGGCGGATGCGGTGGTGGACAAGGCGCAGAAGCTCTGCGCGCTCCACAGCAAAGAGAACGCCGCGGTGAAGGTGAAG
GTGGATGTGAAGGTGGCGGTTGGGGACGCCCGGAGCGTCATCTGCGACATGGTGGACAAGCTCGGAGACGACGTGCTGGT
GATGGGGAGCCACG--TATGGCTTTCTCAAGAGGTA----ATTCTTTCTGACTTCTGTACTGTGCCACACGCTGCACTCC
AGCCTGCAGTGAGACCAGCGGGATTGCTGAACTGATAATTACTTTTAGCTATTCTAATGTGC-ACTCCACTTCAGGCTTC
TGTCAAACTAG--------TGCTCGTGTGACCGAGGATTCTCGTTGGTTTTGCAGGGCTCTCCTCGGGAGTGTCAGCGAT
TACTGCGTCAGGAACGCCAACTGCCCCGTTCTCATCGTCAAGTCGAAATAACAGGGCGAACTGTTCTTGGGAGATTAGCA
GTGATGCCCGTACTTGCATTTGCTGTTTGGCATTAAATTTCTTTCTACTAGTACTACTCTAGTGTGCTTGGCATTAAATA
TACAACGTAGTTGTCATAGTGCTTAATAAAGTTGCCATGTG---------------------------------------
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------------------------------------------------------------GCAATTTTAGTTTGTAGAGC
ATGACAATTTAAGTATTTTGATGATGACAACTCAAGTACTTTGACCATGAAAATTATTTTTTATGAACCATGACAATTTT
AAGTGCATGTATCACGACAATTTTAGTTTATGGTTCATGGCAAGTCTAATTTCTTAATTCCCTATTTTATACTATGTCAA
AATTTACCTTTAAATGTATAAGAAAATAGCTGAAACATATCATGACAACTTCAGTGTAAATACCTTGGCAATTCATGTGC
AATAGACATGACAACTTTTAACTAAAAAATCATCAAAATACATTGATATGAGATCTAGTTTCGAAGATCTCGTCGCGAGA
GATTTAATGGTGAAAACGGATCTTCAATCAGATTTTTCATTTAAAAGATAAAACATTTAAAAAATTGAAAATCCAAAAAT
ATTTTCACATGCATGCCGTGACGTGGCGCAGTCTGTGTGTTATAGGTCGTGTGGGCGGATTTGTCTTCCACCACACGTGT
GGGCGTTAGCGTTGTCCATTACAAAAATCGGGCAAAAACCAAAGTAGACATACCACAACGAAC-----------------
---TACTTACACGGTATGAAATTCCACGTCCGCACGGGTGACCCAC----------------------------------
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>chr4D_684
TTACC---------------------------------------------------------------------------
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TTTAAAAAGTCCAGCCTCT---CTCTAGACACGAAGAATCCAGATCCCTGATCCTTATCCAGAAAAAGTCGAGGCCCGCC
TGTCAGCCTTCCACGCTGCAAACCCCGGCGCCACGCGACCTGCCAAAAACCACGGGCAGCAGCTCTGGTTCCACCAAAGA
GCCGCGGAATGGAGCCCCCAAACCGCGAGCCATCCTCACGGTCACCGTGCAACAT------ATAAACCTTCGCGCCTGCA
CACTGCACTTCAACA---------------------------GACGCACAAAGCATACACGAGGGTGAAGAAGAGATGGA
TCCAGCCGAGGGCCGAAGGATACTGGTGGCCGTGGACGAGGGCGACGAGAGCGTCCACGCGCTGCGATGGTGCCTCACCA
ACTTCGCCACGCGCGGCGACGGCGAGCTTGCCCCA-CCGGACACCATCCTCCTGCTCTACGTCCGGCCGACGCCGCCCAC
CTACTCCGTGCTCGACGCCTCCGGTACGTACGTTTTG--TCTTCAGGAAGCGATCCTACGCTCATCCCGGCGTCGGGAAC
TAACCGGCCTGCACCGTAAGCCCCGCTAGGCTATCTGTTTGTCAATGAGGCGACCGCCGCGATCGACGGGTACAGCCGGG
CGGTGGCGGACGCGGTGGTGGACAAGGCGCAGAAGCTCTGCGCGCTCCACAGCAAAGAGAACGGCGAGGTGAAGGTGAAG
GTGGATGTGAAGGTGGCGGTCGGGGACGCCCGGAGCGTCATCTGCGACATGGTGGACAAGCTCGGAGCCGACGTGCTGGT
GATGGGGAGCCATGGCTATGGATTTTTCAAGAGGTA----ATTACTTCTG------------------------------
-------------------------------------------------TACTCTATTATGTAACTCCACTTCAGGCTTC
TGTCAGAGTAGTGCTCGACTGCTCGTGTGACCGAGGATTCTCGTTGGTTTTGCAGGGCTCTCCTCGGGAGTGTCAGCGAC
TACTGCGTCAGGAACGCCAACTGCCCCGTTCTCATCGTCAAGTTGAAATAACAGGGCCAACTGTTCTTGGGAGATTAGCA
ATGATGCCCGTACTTGCATTTGCTGTTTGGCATTAAATTTCTTTCTACTACTATTTACTACT------------------
------GTATTTGTTATGCCTCCTTTTTTTTTTCTTCACTTTTGGTCGCTTCGCGTGTAACCTGCTAGAGGAGCTAAGGG
GAAGTGCCAAGCAATGTGTCTCAAGATCCCCGCGACTTGTATATATGCCGCTGTTACTGCTCGGTTATCGGTTGAATTTA
TCGTATTGGACATGTTATTAAGCAGCTTGTCATACTTTCATCGATCAGAATCGACTGAATGCACTTCTATTCTGAACTGC
ATGTGGAACACACGAACAAGAAGACAGAGTGTGCCGAG-AAAAACAGTCTATTCACCAGTCACCCCTCACAATATTCTT-
-------------------------------------------------------------CTCTTTTAAACGGAGGGAA
ACGTTTCGCATCATTGATTAATTAAGTAGAAGAGAATTGTGTTGTTAATTATG---------------------------
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-----------------------AAAATCGGGCAAAAACTGAAGTAGACATACCACAACGAACATGCGACCCACCAAACG
CATTACTTACACGGCATGAAACCCCACGTCCGCACAGGCGGCCCACCAAACACTCTCAACACACATAACT---CCTAAAC
GTGACAGTGGAGTGTGCA--------------------------------------------------------------
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>SNPs
----------------------S-----S--S---S---------SS-------S-------S-----------------
---------------------S-----------S-S----------S--S--S--------------S--SSSSSSSSSS
SSS--------S---S--S----S-----SS----SSS-SSSS-SSSSSSSSSS------------SS--------SS--
----S--S----------S------S------SSS---------------------SS-S---------S----------
-----S--------------S--------SSS----S----S--S------S----S-----SS--SS------------
-----S---SSSS--S-S--S-----------S----------S-----------------S----S-------------
---------------------------SS------------------------------------SS-------------
------------S-S--------------S----------S---------------S----S-------------SSSSS
SS------------------------------------------------------------------------SS----
------------------------------------------------------S-------------S--S-----S--
--------------------------------------------------------S---------S-------------
S-------S-S---S----------------------------------------SSSSSS-------------------
---S-------------S-SS------------------------S-----------S-----S-S--------------
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--------S-----------------------------------------------------------------------
----------------------------------S------------------------------------------S--
----------------------------------S---------------------------------------------
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------------------------------------------------------------------------S-------
------------------------------------SSSS---------------------S------------------
--S-------------------------S---------------S--------------------S----------S-S-
--------------------------------S--S--------------------------------------------
-------------------------------------------------------------------------SS-----
-------------------S----S---------S-SS-SSSS-SS-S-SSS-SS---SSSS-SSSS--SSSSSSSSSS-
SSSSSS--S---S--------S-------S--SS----------S-SSS-SSS---------------------------
------S----------S---------S----------------------------------------------------
--S----S-----------S-----------------------S--S---------S----------------------S
----------------------------S--------SS----------S------------S-----------------
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---------S-----------------------------S------S---------------------------------
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-----------------------------------------S--------------------------------------
-------------S---S--------------------SS------S-S--S---------------SSSSSS-----S-
-S----------S-----SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSS
>forward_895
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---------------------------------------------------------------------------AAAGA
ACCGCGGATTCGAGT-----------------------------------------------------------------
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>reverse_2849
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------------------------------------------------CAGTGGAGCGTGGGTTGTAG------------
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