>input_sequence_69634
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------------------------------------------------------ATGGACCGGCGGCCGGAGCTGCAGCG
GGCCATGACGCTCAAGGAGCAGCTCTCCACGCCCGCCGAACCGGCCATCCGCGACTTCCTCAGGATCCCGGACGACGACG
ACGACGGCGGCGGCGGCACAGAGGACAGGCCGTGCACGCTCATGGACGCCATCGACCGGGACGTTCGAGGCGAAGGCGGG
GCTGGTGGTGCGATCAACTGGAAGCCGCTGCGCCACCGGCTCTGGCTCCGCCGCGCCGCGGGAGCGTGGCACGCAGCGGG
GTCGGAGAC------------CGCTGCGGCGAACCGTGCCGTCCCGAGAAGCAGAAGCAAGTGCAACTACACGTCCGGTG
A------GGCGTCCGCCACGTTCTCCCGCGCGCCATCGCTCCGCGCGGTGGTCGACGATGAGGACGGCAGCGACGTAGAA
GAGGAGGCGGAGGACAATGATTTA---CCGCCGCCGGCCGCGGCGTCGACGTCCCTGATAACGCTGATGGAGCAGGCCGA
CGGCCACTGGGACGAAACGGGCGAGGACGGCGGCGAGTCCCGGTGCGGCTCGGTCGAGGACAACGACGAGGACGGCCAGG
GCGAGCGGCGCGAGGAGGACGAGGAGGAGGAGGAGGCGCAGGTGTGCTGCGTGTGCATGGCGCGGCACAAGGGCGCGGCC
TTCATCCCGTGCGGCCACACCTTCTGCCGCCTCTGCTCCCGCGAGCTCCGGCACACCCGCGGCAACTGCCCGCTCTGCAA
CGTCTTCATCCAGGACATCCTCCACATCTTCTGA----------------------------------------------
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>chr3B_1_TraesCS3B01G459700
CCTCGTTTCTTATTTCTTGACATATCAACCAATAAGAGAAGTAAGGTGTGCATGTTTTTAATGACTTGAGACTACCAAAT
ACGACATGCAGTGGTTAGTTCATTGCATGCAATGCTATTAATTAGCAAATGAACATTAAGTTTTCTTGTTTTCCCCTCCT
CCTTGATCATGATGCACAACCTAAAATGACTTATTCACCTAGACGAAAGGAGTAGTAACATATACATGTTACTAGTCTAA
ATTACTCTCCACTATGACCAGCCGTCCGTTTTCCCACCCCAAGACCGAAGCGACGAGAAGGGTTTACGATCGAGGCGCAT
GTAATGGC--CACCAACTTCCATGCATGCATGCCTGGGCG-----ACAGTAATCAAAGTGAGTCCGCTCCTGTTGCCGTG
GTACGTACCAGGTTCCGTTGCTTGCACGCATCACGTACGTCCGTGCCGTGC---GCGCACTGTTCAAGTGCTTCTGTTTC
TTTCAAGTTTTGAAAACCCACTGTTCGAGCGGCATCCGCTGCTATGTTTTCTGTACTGCAACGTACCGTCACATTCACCA
GCAATCTGCAAGTACGTACCGATTTTCAAAATAGTTTTCCTGACCTCCGGCTGTTCCGTCGTCAAAATTTTTAGATCACA
AAGTGGGCAAACTTGCAAGTACAAGATTTCGAAATTGTTTTCTTGACCTCCAGCGATTCCGTTGTCAAATTTTA---CAT
CAAGTGGCCAAATTACTCCACTGGACAGTAGCATGGTGGAAGCCAAGTGCCCGTAGTAAGTCTGACTTAGCGTGGCACCC
AGCGTAATTTAGCTCCCATCCGCGCGCCTTTTCGGTAATTGCATTCCAGGGTTTAAAAACCCCGCGAGACCCGCTCCAGT
CCACGGCGGCTCCCTTCCTCCCCACTCGCGCGCAACCGCAACCCGCCTCTCTGTTCTCAACCACCGCCGCGGGCTACCGC
AGTCACCACCCTC-GACGCCAAGGAGACGCCGCGCCGGCGATCGAGAACTGCCGATGGACCGGCGGCCGGAGCTGCAGCG
GGCCATGACGCTCAAGGAGCAGCTCTCCACGCCCGCCGAACCGGCCATCCGCGACTTCCTCAGGATCCCGGACGACGACG
ACGACGGCGGCGGCGGCACAGAGGACAGGCCGTGCACGCTCATGGACGCCATCGACCGGGACGTTCGAGGCGAAGGCGGG
GCTGGTGGTGCGATCAACTGGAAGCCGCTGCGCCACCGGCTCTGGCTCCGCCGCGCCGCGGGAGCGTGGCACGCAGCGGG
GTCGGAGAC------------CGCTGCGGCGAACCGTGCCGTCCCGAGAAGCAGAAGCAAGTGCAACTACACGTCCGGTG
A------GGCGTCCGCCACGTTCTCCCGCGCGCCATCGCTCCGCGCGGTGGTCGACGATGAGGACGGCAGCGACGTAGAA
GAGGAGGCGGAGGACAATGATTTA---CCGCCGCCGGCCGCGGCGTCGACGTCCCTGATAACGCTGATGGAGCAGGCCGA
CGGCCACTGGGACGAAACGGGCGAGGACGGCGGCGAGTCCCGGTGCGGCTCGGTCGAGGACAACGACGAGGACGGCCAGG
GCGAGCGGCGCGAGGAGGACGAGGAGGAGGAGGAGGCGCAGGTGTGCTGCGTGTGCATGGCGCGGCACAAGGGCGCGGCC
TTCATCCCGTGCGGCCACACCTTCTGCCGCCTCTGCTCCCGCGAGCTCCGGCACACCCGCGGCAACTGCCCGCTCTGCAA
CGTCTTCATCCAGGACATCCTCCACATCTTCTGAGTCGGATCGTATCGTTTAAACTTTGAAGCACAGAA-----------
----GT---------AAATTTGTTCGGAATAATGACGGCGGGGAACGAATGT----------------------------
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-------------GAATTTTGGAACAGTTGCTACTGACTGATTACGAGCCGGGACAAAGACCGTGTGGTACTGTGGTGTG
ACTGTTCTTGTTCGGATGCGCATTAATAATCTACGCACATGTGGAAGACTAGCAGCAATCAGTGCAGCTTTGGGTCGTTC
GATCTACTCTGGTTTGTTTATGGCTGGGTAGGAGCAACTGCACGCTTGTGATTCTTAGTTTAATTTGCGTTGTCTGTCTA
GAAGACTTCCTTGGATTGTTATGTTCATAACAGTGTATTCATGTCAGTGTCAGTTGCGTTCATGATAAGTCGATGGCTAA
CTCACTGCA-CTACAATTTTTTCCAACGAGATGTGATGTGGCCAAATGTCTTGCGCACTGCTGTTTTGAGGGGCCCTGAC
AAGTGACCATTACGAGTGACCGTGAATGAAGGTGGATGTATAGTGAAAATAGATAAATTTGGCACTATTTTAAGACTTTA
GCAAAAAATGAACTGGATTAAAAAAATCACAAAATGGCATGGCGCCCTTGAGAGCATCTCCAACAGCCGCGCTTTGCGCC
ACGCGCAAAAACCCTATTTGCCGCGCGCGCTTCGGCTGGTTTAGCGCGGCCGCCAGCGCTGGCTCCAATAGCCGCGCTAA
AATGCACAGCGCGCGCCGCTCCAGCAGCGCGCGCGACTCGCCGGGCATTTCACATATATGACATTTTGGACACAAAATAA
GTTTGAAACATTCATCAAATGCAATGAACATGTGAAATTTGACACAAACAAGTTGATGAATAAAAATTCATGCCCACAAG
TTCAAAATCATGCCCACAAGTTCATCCAACCAAGTTCAAAATGCAAACTAAAGCTCAAGACACAAATGAAAGACACATCA
ATCATCTTCCTCGTCTTCGTCCTCATCTTCCGAAGACGATTCTTCCGCCTCCGAAGATGA
>chr3A_264
GTCCG---------------------------------------------------------------------------
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-----------------------------TTTGCCCACCCAAGACCGAGGCGACGCGAAGGGTTT-CGATGGAGGTGCAT
GTAGATGTAGCACCAACTTCT---CATGCATGCCTGGCCTGGGCCACAGTAAACAAAGTGAGCCCGCTCCTGTTGCCGTG
GTACGTACCAGGTTCCGTTGCTTGCACGCATCACGTACGTCCGCTCGCGCGCATGCACACTGTTCAAGTACTTTTATTTC
TTTCAAGTTTTGAAAACCCACTGTTCAAGTGGCA----CTGCTATATTTTCTGTACTGCAACGTACCGTCACATTCACCA
GCAATCTGCAAGTACGTACCGATTTTCAGAATAGTTTTCCTGACCTCCGGCTATTCCGTCGTCAAAATTTAGATGAC---
AAGTGGCCAAACTAGCAAGTACAGGATTTCGAAATAGTTTTCCAGACCTCCGGTGATTCCGTCGTCAAATTTTAGGACAT
CAAGTGGGCAAATTACTCCACTGCCCAGTAACATAGTGGAAGCCAGGTGCCCGTCGTAAGTCTGACTTAGCGTGGCACCC
GGCGTAATTTCGCTCCCATCCGCGCGCCTTTGCGGTAATTGCGTTCCAGGGTTTAAAAACCCCGCGAGGCCCGCTCCAGT
CCACGGCGTCTCCCGTCCTCCCCACTCGCGCGCAACCGCAGCCCGCCTCTCTGTCCTCTCTCAACC---------ACCGC
GGTCACCACCCCC-GACGCGAAGGAGACGCCGCGCCGGCGATCGGGGCCTGCCGATGGACCGGCGGCCGGAGCTGCGGCG
CGCCATGACGCTCAAGGAGCAGCTCTCCACGCCCGCCGAACCGGCCATCCGCGACTTCCTCAGGATCCCGGACGACGACG
ACGACGACAGCG------CAGAAGACAGGCCGTGCACGCTCATGGACGCCATCGACCGGGACGTTCGAGGCGAGGGCGGC
TCTGGCGGTGCGATCAACTGGAGGCCGCTGCCCCACCGGCTCTGGGTCCGTCGCGCCGCGGGCGCGTGGCACGCGACAGG
GTCGACGGCCAAGCCTCCCCGCGCCGTGGCGAGCAGAGCCTCCCCGAGAAGCAGCTACAAGTACCACCCGTCCCCCGGCG
AGGGATCGGTGGCCGTGGCCTTCACCCGCGCCCCGTCCCCGCGCGCCGTGGTCGACGACGACGAGGAGAACGACGTAGAA
GAGGAGGACGGACACAACGACGAGCCTCCGCCGGTGGCGGCGGCGTCGACGTCACTGATGGCGCTGCTGGAGCAGACGGA
CATCCACTTG---GAAGCTGACGAGGACGGCGGCGTGACCCAGTGCGGCATGGTCGATGTCAACGACGAGGACGGCCACG
GTGACCGGCACGAAGAGGAAGAA---GAGGAGGAGGCGCAGGTGTGCTGCGTGTGCATGGTGCGGCACAAGGGCGCGGCC
TTCATCCCGTGCGGCCACACCTTCTGCCGCCTCTGCTCCCGCGAGCTCCGGCACGCCCGCGGCAACTGCCCGCTCTGCAA
CGTCTTCATCCAGGACATCCTCCAAATCTTCTGAACTGGATCCTCTGCCATGTGCGGCGGCATGTCGCCCATTGTTCAGA
CATTGGAGCCTGTAATAATTCGTTCGAAATAAG----------------TGT----------------------------
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-------------AAATTTTTGAACAGTTGGGACTTGTGAGCGACTGATCGACGGAGGCCG----------TGTGGTGTG
ATTGTTCTTGTTCGGACGCACATTAATT---TACGTACATGTGACAAACTAACAGCAATCAGTGCAGCTTTGGATCGTTC
GATCCACTCCGCTTTGTTTATGGCCGGGTAGGAGCAACTGCACGCTTGTGATCCTTAGTTTAATTTCCCTTGTCTGTCTG
GAAGACTTCCTTGGATTGTTATGTTCATAACAGTGCATTCATGTCAGTGTCAGTTGCGATCATGATAAGTCGATGGCTAG
CTCACTGCAGCTACAATTTTTTCCAACGGGATATGA-----CCAAGCGTCTTGCGCGCTTCTGATTTGATGGGGTCTTGA
C-------------------------------------------------------------------------------
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>chr3D_310
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---------------------------------------------------------------------TCGAGGTGCAT
GTAGCACCAAC-------TCT---CATGCATGCCTGGGCG-----ACAGTAAACAAAGTGAGCCCGCTCCTGTTGCCGTG
GTACGTACCAGGTTCCGTTGCTTGCACGCATCGCGTACGTCCGTGCCGTGC---GCGCACTGTTCCAGTACTTCTGTTTC
-TTCAAAGTTTGAAAACCCACTGTTCAAGCGGCAGGCGCTGCTATATTTTCTCTACTACAACGTACCGTCACATTCACCA
GCAATCTGCAAGTACGTACCCATTTTCGAAATAGTTTTCCTGACCTCCAGCTATCCCGTCGTCAAAATTTAGATCAC---
AAGTGGGCAGACTTGCAAGTACAGGATTTCGAAATAGTTTTCTTGACCTCCAGCGATTCCGTTGTCAAATTTTAGTACAT
CAAGTGGGCAAATTACTCCACTGCCCAATAGCATGGTGGAAGCCAGGCGCCCGTAGTAAGTCAGACTTAGCGTGGCACCC
AGCGTAATTTAGCTCCCATCCGCGCGCCTTTGCGGTAATTGCGTTCCAGGGTTTAAAAACCCCGCGAGACCCGCTCCAGT
CCACGGCGTCTCCCGTCCTCCCCACTCGCGCGCAACCGCAGCCCGCCTCTCTGTC--CTCTCAACC---------ACCGC
AGTCACCACCCCCCGACGCGAACGAGACGCCGTGCCGCCGATCGAGGCCTGCCGATGGACCGGCGGCCGGAGCTGCGGCG
CGCCATGACGCTCAAGGAGCAGCTCTCCACGCCCGCCGAACCGGCCATCCGCGACTTCCTCAGGATCCCGGACGACGACG
ACGACGA---------------GGAAAGGCCGTGCACGCTCATGGACGCCATCGACCGGGACGTTCGAGGCGAGGGCGGG
GCCGGCGGTGCGATCAACTGGAGGCCGCTGCGCCACCGGCTCTGGCTCCGCCGCGCCGCGGGGGCGTGGCACGCGGCGGG
GTCGGAGACCAAGCCTA---GCGCTGCGGCGAGCCGTGCCGCCCCGAGAAGCAGCGGCAAGAGCAACTACACGTCCGGTG
A------GGCGTCCGCCGCCTTCTCCCGCGCGCCGTCGCTTCGCGCCGTGGTCGACGACGAGGGCGGCAGCGACGTCGAA
GAGGAGGCGGAGGACAATGATTTG---CCGCCGCCGGCCGCGGCGTCGACGTCCCTCATGACGCTGATGGAGCAGGCCGA
CGGCCACTGGGACGAAGCGGGCGAGGACGGCGGCGCGTCCCGGTGCGGCTCGGTCGAGGACAACGACGAGGACGGTCGCG
GCGAGCGCCACGAAGAGGAAGAA---GAGGAGGAGCTGCAGGTGTGCTGCGTGTGCATGGTGCGGCACAAGGGCGCGGCC
TTCATCCCGTGCGGCCACACCTTCTGCCGCCTCTGCTCCCGCGAGCTCCGGCACACCCGCGGCAACTGCCCGCTCTGCAA
CGTCTTCATCCAGGACATCCTCCACATCTTCTGAACTGGATCCTCTGCCATGCATAGTTGCATGTCGCCGATGTTCAGTC
ATGGGT---------TAATTTGTTTGGAATAAGAAACAATGTTGGGAATGGATGTAAATTTTGAAACGGTTTTTCTTCGA
ACACAGTACGCGTAAGCGCTCATGTAAACACGCATACACTCAATCCTATGAACGCACATGCGCACACCCTACCTCTCTGA
GCACATCCGAGAGACCGAATCGGCATACCATCATGAGATTTTACTAAATCACCGTAAGCGCCTCGTAGTCGACGAAGACG
TCTCCTCCCGCTAAAATTTTGGAAAAGTTGTGACTGATTGACAGAGAG-----------CG----------TATGGTGTC
ATTGTTCTTGTTCGGACGCGCATTAATTCG-------CATGCGAAAAACCAACATCAATCAGTGCGGCTTTGGACCGTTC
GATCCACTCCGGTTTGTTTATGGCTGGGTAGGAGCAACTGCACGCTTGTGATCCTTAGTTTAATTTGCCTTGTCTGTCTG
GAAGACTTCCTTGGATTGTTATGTTCATAACAGTGTGTTCATGTCAGTGTCAGTTGCGATCATGATAAGTCGATGGCTAG
CTCACTGCAGCTACAATTTTTTCCAAGGAGATATGA--------------------------------------------
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>SNPs
SSS--SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSS---S--SS-----------S------S---------S---------S----
---SSS--------------SSSS----------------------------S---------S-----------------
---------------------------------------------------------------------S----------
--------------------------S-------SS---------S----------------------------------
----------------------------------------------------S-----------------SS-SSS-SSS
-----------------------S-----------S--------------------------------------------
-------S---------------SS--------------------S----------------------------------
-------------------------------S----------S-------------------------------------
--------S-----S-------------------------S-------------S---SSS--S-SSSSSSSSSS-----
-----------S-------S--------------------------SS----------------------------S---
S-------------------------------------------------------------------------------
------S-S---SSSSSS-------------------------------------------------------S------
-----S----------------S---------------------------------------S-----------S-----
--------------------------------S--------S------------SS------------------------
-----------------S-S--------------S-----S-----S-----------S---------------------
-----------------------S-----------------------------------S--------------------
----------------S------------------S------------------------------------------S-
---------S---S-----S--SSSS----------------------------------S-------------------
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----------------------------------SSS-----S-S-SSSS-SS--SS--SSSSSSS-SS-----------
---------------S----------------SS-SSSSS-SSSSSS-S-------------------------------
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-------------S----------------SS-----S---SS-----S--SSSS-SSSSSSSSSSSSSSS---------
-S--------------S----------SSSS----S-------S--S----S---------------------S------
----S----S------------------------------------------S---------------S----------S
----------------------------------------------------------S--------------------S
--------------------------------S---SSSSS----SS---------S--S---S-----S---SS--SSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
>forward_325
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-----------------------------------------------------------------ACGATCGAGGCGCAT
GTAAT---------------------------------------------------------------------------
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>reverse_1322
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-----------------------------------------TCCCGAGAAGCAGAAGCAAG-------------------
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>forward_947
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-----------------------------------------------TCTCTGTTCTCAACCACCGC-------------
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>reverse_2122
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-----------------------------------------TTACGAGCCGGGACAAAGAC-------------------
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