>input_sequence_69631
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------------------------------------------------------ATGGCCACTTCTTTTTCTTGCTTCCT
TGCCATCTCAATTCTACTAGTGTTCTTCTCACTCCCCCCGCTTACTGGTGCAAGGCTCCTGTATGCGGACAAGAACTCCC
TCAATGACAGCAAGTCTTTCTCCATCGGAGGTGGGAGAGGCAAGGGTGGCGGCCGAGGTTTTGGTGTGAGTATCAGCCAT
GGCGGGCACGGCACCTCCATCGCTATAGGTGGCGGACTTGGAGGTGGAGCTGCTACTAACCATGGTGGTGGCCCAAGCGT
AGGTGGTGGAGCAGGTGCGGGCATTGGCATCAATATAGGGCACGGTGGCGTGGATGTAGGGATAGGTGGGGGTGGAGGTG
GAGCGGCTAGCACCGGCGGGGCGCATGCAGGTGGTAGTGGTGGAGGTGGCATTGGAGTTCACATAGG---CCATGGTGGC
GTGGATGTAGGGATAGGTGGAGGTGGAGGTGGGGCAGCTAGCACCGGCGGTGTGCATGCAGGTGGTGGCGGGCGAGGTGG
CATCGGATTTCACATAGGCCATCATGGGGCTACTGTAAGCGCCGGGGGTGGGGGCGGCGGCGGTGCTGGTGTACGTGGAA
GTGGGGGAGGCGAAGGCGATGGTAGCGGTGTTGGTCGTGCCGGCAATGTTGTGGGTGGTGGGGGAGGGTATGGTAGTGCA
AACGGCGGTAACAGAAGCGGAGGAGGTATCGGAGTTGGATCAGCTCGTGGAAGTGTAGGTGGTGGCTCTGGAAATGGTGG
TGTAGTACATGGTTGA----------------------------------------------------------------
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>chr3A_1_TraesCS3A01G094000
GACAAGCTTTTTGGAACAGAGGAAGTACATCCAAAGACATATACACCGGTTATCACATGGGTACAGAATATAGAAAGGTC
ACCATTGAGTTTTCTGACTCATGGTCCTTGAAAAAGTAGAGAAAGTGGAGAGAGAAATGGGCGGATTTTTGCAACCAAAT
TATATATACGGTGATTTTTTACTGTTCTATAGATGTCTATAATTTCTTCCAGAAGGTAGTTACGGTTAAAATTAGACTAA
GAATGGCGGCGTTGGGCTAGAAAAGTGCGGATACAAAGCAAGGGGGGAAAACAGAGTGGAACAGAAGTGGGCCGGGATTG
TGAGTCCTACGTGGCGGAGGTCCAGACTTCCACAAACCTCCTCCAGTTTATGGCCGGTTTGCGAGAATACCGACTCACAG
ACCCATCCACCAAAGTATGCGGCATCGCGTCGGATGGCAAAAAAATGTCCGGACGCTGTCAGTCTAGACGTTTGTGGGCA
TTTTATGAGATGCCCTTTGTTTAGCACATGCCATGGAGCAGAACATATTCGCCAGCTGTCTGTCACACCTGCAAGGAAAG
CAAGTCTGCAGCCAGAGAAAATGAGCTTGAAAGGGTTCCCAAAAGAAAAGAAAGAGCTTGAAAGGCCATGTGGAACTCAA
CTTTGCATGTACATGTCGATCAAAGTACGTGTGAATTCCGTTTCAAAAAAAAAAGTACGTGTGAATGGTTGCGTTAGTTT
TTTCAAAAAGA---GAGCAACACTTTCGAA----CATGACAGCAAATGAAATTGTTCCGTGCACGCCGAACAGCATTTTC
TTGGCCATGCATGTGCATGTGTCACACAGCTCACGG-CAAACCACCTTTGCTTGAGGCCGGTTACTCAGCACAGCATTGA
TCGAGCCACAGGATATATTTATCATAACCTGATTATACATAAAGGCAA----CT--ACCAGCTACCCACTTATACCATCG
ATCGGTGTACACTACCACATACAGCAATTGCACCACCCTTCCCCGCATTTCCCCATGGCCACTTCTTTTTCTTGCTTCCT
TGCCATCTCAATTCTACTAGTGTTCTTCTCACTCCCCCCGCTTACTGGTGCAAGGCTCCTGTATGCGGACAAGAACTCCC
TCAATGACAGCAAGTCTTTCTCCATCGGAGGTGGGAGAGGCAAGGGTGGCGGCCGAGGTTTTGGTGTGAGTATCAGCCAT
GGCGGGCACGGCACCTCCATCGCTATAGGTGGCGGACTTGGAGGTGGAGCTGCTACTAACCATGGTGGTGGCCCAAGCGT
AGGTGGTGGAGCAGGTGCGGGCATTGGCATCAATATAGGGCACGGTGGCGTGGATGTAGGGATAGGTGGGGGTGGAGGTG
GAGCGGCTAGCACCGGCGGGGCGCATGCAGGTGGTAGTGGTGGAGGTGGCATTGGAGTTCACATAGG---CCATGGTGGC
GTGGATGTAGGGATAGGTGGAGGTGGAGGTGGGGCAGCTAGCACCGGCGGTGTGCATGCAGGTGGTGGCGGGCGAGGTGG
CATCGGATTTCACATAGGCCATCATGGGGCTACTGTAAGCGCCGGGGGTGGGGGCGGCGGCGGTGCTGGTGTACGTGGAA
GTGGGGGAGGCGAAGGCGATGGTAGCGGTGTTGGTCGTGCCGGCAATGTTGTGGGTGGTGGGGGAGGGTATGGTAGTGCA
AACGGCGGTAACAGAAGCGGAGGAGGTATCGGAGTTGGATCAGCTCGTGGAAGTGTAGGTGGTGGCTCTGGAAATGGTGG
TGTAGTACATGGTTGATTGGTTTGTTAATTTGAGAAGTACATATGCATACAACA---TATTTTAGTTTGCTAATGAAATA
CTCCCTTTGTAACTTTTTATAAGACGTTTAATATAATATGGGTATGTATAGGAAACGATAAATATGCTAGTATTTTTGTG
TTTATTGTATGTCTAATATTATTGGTGTCACCTTCTAAATGAGCGGGAGTGCCTTGACTATGATGGTATTGTACTATGTG
GTATCTTTCACCAACGGAACATGTAACAGGTCCACACTAATCAGATGGTGTCTTTTGTAAAGTTAC--------------
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------ATAAGTTTTATATATTACCGAAGATATGTCTTT--TCAAGAGTGCGCCAGTGATGTATCATATTTTTATAGAAG
ATCGAAAGATTTCGAGAACGTAGCATAACTTTATGAGAAAGATTTCTCTAAACTTTATGGACATGTCTGGTTCGTGCTTC
AGCAGCGTCACTTGATTAAATCATTAACGGATATCTTTAAATCATTAACTTGATTGCATTATTAATGGATACCAAAATCA
TGTTTGCTTCGGTGGCTCTATAATCCATAACATGGTGTCAAGTCCCAGCAGCATAAAAAATTGTTTCCACTTAAAATCCT
CCGTATTAGAAAACGCTACGATATCATCTGGCACCTATCATTTCATTTAGCAGCATACCTTTACTAGATCCTACCTATAT
GCATCATCTTCATTTGTTGATTTGCTTACCAATACAAGACTAGCTTACCAATATCAACACCAGCACGGGCTAGCTTGCCA
ATATCATCAGCCTAAAAGGGGTACTAGAGATGCCCTTTCTGTCACCCTGGTGCAGCCATCAGGACTTGAGGCTGTCACGC
ACTGATGCTTCACAGGGAATCTGGTGCAGTGATATCTTATCAGTGAAGCAGCTGTAGAAGCAATGGAAAATGAGATGTCT
GTGAACTTTAATACTACGGAGACAGAGGGAGTATTTTATGTCAACAATTGGTTAAGTTGGGGCAGCGAACAGTTAGGGCA
A
>chr3D_600
CAAAAGAGAAAAT-------------------------------------------------------------------
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-----------------------------------------------------GAGCTTGAAAGGTCATGTGGAACTCAA
CGTTGCATGTACATGTCGATC------------------------------AAAGTACGTGTGAATGGCTGCGTTAGTTT
TTTCAAAAAGACCAGGGCAACACTTTCGAACATGCATGACAGCAAATGAAATTGTTCCGTGCACGCGGAACAGCATTTTC
TTGGCCATGCATGTGCTCT------ACAGCTCATCTACAAGCCACCTTTGCTTGAAGCCGGTTACTCAGTACAGCATT-A
TCGAGCCACAGGATTTATTTATCATAACCTGATTATATATAAAGGCAG----CTACACCAGCTACCCACTTATATCATCG
ATCGGTGTATACTAC-ACATACAACAATTGCACCACCCTTCCCCTCAGTTTCCCATGGCCACTTCTTTTTCTTGCTTCCT
TGCCATCTCAATTCTAGTAGTGTTCTTCTCACTTCCCCCGCCTACTGGTGCAAGGCTCCTGTATGCGGACAAGAACACCC
TCAATGACAGCAAGTCTTTCTCCATCGGAGGTGGCAGAGGCAAGGGTGGTGGCAGAGGTTTTGGTGTGAGTATCAGCCAT
GGCGGGCACGGCACCTCCATCGCTATAGGCGGCGGACTTGGAGGTGGAGCTGCTACTAACCATGGTGGTGGCCCAAGCGT
AGGTGGTGGAGCAGGTGCGGGCATTGGCATCAATATAGGGCATGGTGGCGTGAATGTTGGGATAGGCGGGGGTGGAGGTG
GAGCGGCTAGCACCGGCGGGGCGCATGCAGGTGGTAGCGGTGGAGGTGGCATTGGAGTTCATATAGG---CCATGGTGGT
GTGGATGTAGGGATAGGTGGAGGTGGAGGCGGGGCAGGTAGCACTGGCGGTGTGCATGCAGGTGGTGGCGGAAGAGGTGG
CATCGGATTTCACATAGGCCATCGTGGGGTTACTGTAAGCGCCGGTGGTGGGGGCGGTGGTGCGGCCGGTGTAGGTGGAA
GTGGGGGAGGCGAAGGCGGTGGTAGCGGTGTTGGTCGTGCCGGCAATGTTGTGGGTGGTGGGGGAGGGTATGGCAGTGCA
AACGGCGGTAACGGAAGTGGGGGAGGTACCGGAGTTGGGTCAACTGGTGGAAGTGTAGGTGGTGGCTCTGGAAATGGTGG
TGTAGTACATGGTTGATTGGTTTGTTAATTTGAGAAGTACATATGCACACAACATTTTATTTTAGTTTGCTAATGAAATA
CTCCCTCTGTAACTTTTTATAAGACGTTTAATATAATATGGGTATGTATAGGAAATGATAAATATGCTAGTATTTTTATG
TTTATTGTATGTCTACTACTATTGGTGTCACCTTCTAAATGAGCGGGAGTGCCTTGACTATGATGGTATTGTACTATGTG
GTATCTTTTACCAACGGAACATGTAACAGGTCCACACTAATCAGATGGTGTCTTTTGTAAAGTTAC--------------
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------ATGAGTTTTATATATTATCGAAGATATGTTTTT--TCAAGAGTGCTCCAATAACGTATCATATTTTTATAGAAG
ACCGAAATATTTCGAGAACGTAGCGTAACTTTATGAGAAAGATTTCTCCAAACTTTATGGACATGTCTGGTTTGTGCTTC
TGCAGGGTCACTTGATTAAATCATTAACGGATATCTTTAAATCATTAACTTGATTGTATCATTAATGGATACCAAAATCA
TGTTTGCTTCGGTTGCTCTATAATCCATAACATGGTGTCAAGTCCCAGCAGCATAAAAAATTGTTTCCACTTAAAATCCT
CGGTATTAGAAAACGCTACGATATCATCTGGCACCTATCATTTCATTTAGCAGCATACCTTTACTAGATCCTACCTATAT
GCATCATCTTCATTTGTTGATTTGCTTACCAATACAAGACTGGCTTACCAATATCAACACCAGCACAGACTAGCTTACCA
ATATCATCAGCCTAAAAGGGGTACTAGAGATGCCCTTTCTGTCACCCTGGGGCAGCCATCAGGACTTGAGGCTGTCACGC
ACTGATGCTTCAAAGGGAATCTGGTGCAGTGATATCTTATCAGTGAAGCAGCTGTAGAAGCAATGGAAAATGAGATGTAT
GTGAACTTTAATACGACGGTGACAGAGGGAGTATTTTATGTCAACAATTGGTTAAGTTGGGGCAACGAACAGTTAGGGCA
A
>chr3B_609
------AGAAGAT-------------------------------------------------------------------
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-----------------------------------------------------GAGCTTGAAAGGCCATGTGGAACTCAA
CTTTGCATGTACATGTCGACC------------------------------AAAGTACGTGTGAATGGTTGCGTTAGTTT
TTTCAAAAAGACCAGAGCAACACTTTAGAA----CATGACAGCAAATGAAATTGTTCCGTGCATT--GAACAGCATTTTC
TTGGCCATGCATGTGCTAT------ACAGCTCACCTACAAACCACCTTTGCTTGAGGCCGGTTACTCAGTACAGCATTGA
TCAAGCAACATGATTTATTTATCATAACCGGATTATATATAAAGGCATGCAGCT--ACCAGCTACCCACTTACATCATCG
ATCGGTGTACACTAC-ACATACAACAATTGCACCACCCTTCCCCGCAGTTCCTCATGGCCACTTCTTTTTCTTGCTTCCT
TGCCATCTCAATTCTAGTAGTGTTCTTCTCACTCCCCCCGCCTACTGGTGCAAGGCTCCTGTATGCGGACAAGAACACCC
TCAATGACAGCAAGTCTTTCTCCATCGGAGGTGGGAGAAGCAAGGGCGGTGGCCGAGGTTTCGGTGTGAGTATCAGCCAT
GGTGGGCACGACACCTCCATCGCCATAGGTGGCGGACTTGGAGGTGGAGCTACTACTAACCATGGCGGTGGCCCAAGCGT
AGGTGGTGGAGCAGGTGCGGGCATTGGCATCAATATAGGGCATGGTGGCGTGGATGTTGGGATAGGCGGGGGTGGAGGTG
GAGCAGCTAGCACCGGCGGGGTGCATGCAGGTGGTAGCGGTGGAGGTGGCATTGGAGTTCATATAGGGCGCCATGGTGGC
GTGGATGTAGGGATAGGTGGAGGTGGAGGCGGGGCAGCTAGCACCGGCGGTGTGCATGCAGGTGGTGGCGGTAGAGGTGG
CATCGGATTTCACATAGGCCATCGCGGGGTTACTATAAGCGCCGGTGGTGGGGGCGGTGGTGGCGCCGGTGTAGGTGGAA
GTGGGGGAGGCGAAGGAGGTGGTAGCGGTGTTGGTCGTGCCGGCACTGTTGTGGGTGGTGGGGGAGGGTATGGCAGTGCA
AACGGCGGTAACGGAAGCGGGGGAGGTACCGGAGTTGGGTCAGCTGGTGGAAGTGTAGGTGGTGGCTCTGGAAATGGTGG
TGTAGTACATGGTTGATTGGTGTGTTAATTTGAGAACTACATATCCATACAACATAC---TTTAGTTTGCTAATGAAATA
CTCCCTCTGTAACTTTTTATAAGACATTTAATACAATATGGGTATGTATAGGAAACAATAAATATGCTAGTATTTTTATG
TTTATTGTATGTCTAATATTATTGGTGTCACCTTCTAAATGAGCTGGAGTGCCTTGAATACGATGGTATTGTACTATGTG
GTATCTTTTACCAATGGAACATGTAACGGGTCCACACTAATCAGATGGTGTCTTTTGTAAAGTTAGAGTGTCCGGTCACT
GCCCACGGATGCGTCCGGACGCGTCTGCGGGCATTTGAGGGGTCATATTTGCCCTCTACGGTTGTAGATCAATAAACGGA
CACAGGCAAACACAATACTTTCACCAAAAGATCGGATGTCCAAACGACGACCAAAGTTCAAACGACGGACAACTTGAAAC
TACATCTAAAACTTGAAATTAAATTGAAGCAAAGCGGATCTTCACCACTTTCGGGCCGTCCCCTTCCCCTTCTGGTCGGC
GGCGCTGCTGTAGCCGTTGGCGGTTTGTGGAGGATCGTCCGACTCGTCGAACAAGGAGCCGTCGTCGTCGTCGGAAGAGG
AGGAGATGATGATGAGGCCCTTGAGGCGTCGGACGGCCCGGTCCTGCCGCCACTTCACCTTGGGCATCCGAGCCGCCTCC
ATCACCTTCTCCTTGGCCTCGCGCTCAGACTGCTTGATAGCTAGCCGGAGAGCCTTCACATTCTTCCGGCGGAGCTGCCG
AGCGTCTGTCTCCGCCGTCGTAAGCGACCGGCGGTAGACCCAGGCGAGGAGCCGCTCGTCCTCGTCGGGCTCCATGGGTA
ACCCGCGGCGGCTGCGGACAGAGCTCTTCGCCACGTCCCTCTCCCTTGCTCGCTGCCTCTCGCGACGGGCGGCTCACGCG
TCTGACTCCGGCGTGCGTGTCTGGGCCGGCGCCGCAGGGGTGGGCACAAGAACCCACCGTTGTCCGCGTGGGGGAGCAGC
AGCAGGCGGCGCAAGGGGACAACGTGGGGAGGCACGGACTGTGCAGCCCACACGGAGCCAAGCGTGGGCCGGAGGAGCCG
GCGCCAGCTTCCTCGCTGCGCCGGCGGGGGAGAGGTGAGCCGATCCGGAACTGCCACCCGTGTCCACCTTGGATCTCTCG
AGGACAATGCAGAGGGCTAGATCCTCGTCGGAGTCGAAGGAGGATCGACTGCCGGCGCTCGACATGGTGGCCACAGTCAC
CGGAGTGGTCAAAGTGATCGGAGTGGATCGAATCGGAGAAATTGGAGGGAAGAAGAAGAGACGGATCGAGAGTGGAGTGA
GTTAGGGTTTTTGGATTGGGGATATTTGTGGGGACGAAGTGGGGTAGGGGTGCGCCGGACCGACGTGGCGGGCGTGCCCA
GACGCCCCCATATTTGGGATGGATATGAGGGGTGTCAGACAGCCCGGGCGTTTGAGAGCCGTTTGAGGCACCCGACTGGG
TAGGAAAAACGTGACTGGTCAGTGACCATGCGAGCCGTCTGGGCATTTGTGACCAGTATGAGGCGCCCGACTGTAGATGC
TCTTAGATGAGTTTTATATATTACCCAAGACATGGTTTTTCTCAAGAGTACCCCAATTACATATCATATTTTTATAGAAG
GCCAAAAGATTTCCATAACATAGCATAACTTTATGAGAAAGATTTCTCTAAACTTTATGGACATGTCTGGTTCGTGCTTC
TGTAGCGTCACTTGATTAAATCGTTAAGGGATA-----------------------------------------------
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>SNPs
S-S---SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS---------------------------
---------------------SSSSSSSSSSSSSSSSSSSSSSSSSSSSSS-----------------------------
------------------------------------------------------------------S-------------
----------------SSSSSSSSS---------SS---------------------------------S----------
--------------S----------------------S---------S--------------------------S-----
---------------S-------S-----------------------S--------------------------------
----------------S------------------------S----------------------------------S---
-------------------------------------------------S------------------------------
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------------------------------------------S--------------S--------S-------------
-------------------------------------S-----------------------S------------------
-----------------------------S-----------------------------------------SS-------
-----------------------S-----S---------------S-----------S--S--S--S------S------
------------------S------------------------------------------------------S------
------------S-------S-------S---------S------S----------------------------------
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------S----------------------------------------------------------------------S--
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--------S-----------------------------------------------------------------------
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--------S--------------------------S---------------S---S-S-S--------------------
-S------------------------------------------------------------------------------
S-------------------------------------------------------S--S--------------------
-------------S------------------------------------------------------------------
-S------------------------------------------------------------------------------
-----------------------------------------S------------------------S-S-------S---
--------------------------------------------------S-----------------------------
------------S-----------------------------------------------------------------S-
--------------S----S--------------------------------------------S---------------
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>forward_427
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-------CACCAAAGTATGCGGCATCG-----------------------------------------------------
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>reverse_1584
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---------------------------------------------------------------TGCTGGTGTACGTGGAA
GTG-----------------------------------------------------------------------------
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>forward_1470
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----------GGATAGGTGGAGGTGGAGGT--------------------------------------------------
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>reverse_3891
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--------------------------------------------------TGCAGCCATCAGGACTTGAG----------
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