>input_sequence_69623
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--------------------------------------------------------------------------ATGGCT
TGCAAGATCGCCAGCATGTCCTCCTCTCTTGCGGCGCTCCTCCTCGGCGTGCTGCTGCTCTCGCGCGGCGGCATCAGCAA
CGCGGCGCGGCACCTGGAGGAGCCGGAG---------GTGCCTCCGGATCTCCCGGCACCTCTGCCCAGGCCGGACTTGC
TGCCGCCGCTGCCCATACCCGACGCGCTGCCAAAGCCGGAGCTGCCGCCGCTGCCCATACCCGGCGGGCTGCCCAGGCCG
GAGCTGCCGCCGTTGCCCATACCGGACGTGTTGCCAAAGCTGCCGTTGCCGGAGCTGCAGCCGTTGCCGGAGCTGCAGCC
GTTGCCTACACCTGACGTGCTGCCGATGCCGGAGCTGCCACCGC------------------------------------
TGCCCAAACCTGACGTGGAACCAATGCCAGAGCTGCCACCAGTGCCCAAGGGTGAGGAGCGACCGAAGACGGAGCTGCCT
CCGCTGCCAACAGGTGAGATCGCACCACAACCGGCTCTGCCGCCTCTTCCTACAGGCGACCTTGCGCCCAAAGCAGA---
------GCTACCCAAGATAGACGAGCCGACGAAGACGGAGCTGCCTCCACTCCCGACCGGTTATCTTCCGCCGAAGCCAG
AGGTCGAGCTGCCACCCAAGACAGAGGAGCCACCGAAGCCGGAGCTGCCTCCACTCCCGACCGGT---------------
---------GAGCTTGCACCGAAGCCAGAGCTGCCGCCACTCCCTACCAGTGAGCTTGCACCGAAGCCGGCGCAGCCGCC
ACTGCCCAAGCCCGCGGAGCCAAAACCATGA-------------------------------------------------
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-------------------------------------------
>chr2A_1_TraesCS2A01G178600
ACTATGGAGCGTTAGCACGACAATTTCTCGACTGCCTACTAGAACAAGTTGTGTCCGGCTCCAGCGAGGGAGGAACGATT
ATGGCGGCGCTCCTTCGGCTCGTTTCAGTGTTTATAGTTGTCGGTAGATGGACTACAAATCTTAATGTAATTTGTATTAC
TTATGGTGTTGGATGTACTATCATGATTGAAAACGAATAGATCAAAAGTTTACACCAAAAAAAGAGATTGATAGCGTAAC
TCCTAAAAATAAGATCTGGATAGAGCACGTTTTTCTCAACAACAAAATATATAAAAATC----TTTTTCTCAACAACAGG
AAAGTCAATAATAATCTCGACGCATGTTTCATTGCGCGTTATTAACAAAAAAATCAACAACGTTTTTCTCCTTGGCGATC
ATGATGCACGGACAAGCTGGCACTCTCCTCCCGCCTCCTGGGAGTGAGTAGAACTAGCTCGTACTCCAAAACGTGAAACG
TACCAGCCCAGTAGTCTCAAGCAACCAATGGCGTGACCTCGCACCTTAAAAAAAAAATGTGATTCCGCAGGAATTTCTCT
CGCAGTAATAATAAATAAATCCATCGAAAGCAGGTTAAGGACCCA-----------------------------------
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----------------------------------------------------------------------CCTCTTGACG
CTTGGAACGTCTGTGGTCATTTTTTC-TCTCTTCTTTTTTGACCGGACGACAGGTTAATTTCGTGTGCAGATTGTGTGAC
ACTGACCCATACGCGCCCGGCGGTTTTCTCTGCGCAGGCAACGTCGCAGTAGTGTA-AACCGCAGCAACCGATCCGGTCG
----GCCCCGCTGGCCCGATTCTCCAACGCGCCACACGGGCCAAGCACG-AAACGTACCACGGATTAAGTGCCCGGAAGA
A---ACGCAGCGCACTTACGCAGGCGATC--------------------GATCTTGGGTGTAACGCATCGCCACGCCATC
GATCGGCTCCGTCCGACGAGCGCCTT----CTAT---------------------------AAATGCTGCACCCTCGCCT
TCGTTTCTCTTCACCCCACACCG--------------------TTCTTGACCAGTCCAGT----GAAGCCAGCCATGGCT
TGCAAGATCGCCAGCATGTCCTCCTCTCTTGCGGCGCTCCTCCTCGGCGTGCTGCTGCTCTCGCGCGGCGGCATCAGCAA
CGCGGCGCGGCACCTGGAGGAGCCGGAG---------GTGCCTCCGGATCTCCCGGCACCTCTGCCCAGGCCGGACTTGC
TGCCGCCGCTGCCCATACCCGACGCGCTGCCAAAGCCGGAGCTGCCGCCGCTGCCCATACCCGGCGGGCTGCCCAGGCCG
GAGCTGCCGCCGTTGCCCATACCGGACGTGTTGCCAAAGCTGCCGTTGCCGGAGCTGCAGCCGTTGCCGGAGCTGCAGCC
GTTGCCTACACCTGACGTGCTGCCGATGCCGGAGCTGCCACCGC------------------------------------
TGCCCAAACCTGACGTGGAACCAATGCCAGAGCTGCCACCAGTGCCCAAGGGTGAGGAGCGACCGAAGACGGAGCTGCCT
CCGCTGCCAACAGGTGAGATCGCACCACAACCGGCTCTGCCGCCTCTTCCTACAGGCGACCTTGCGCCCAAAGCAGA---
------GCTACCCAAGATAGACGAGCCGACGAAGACGGAGCTGCCTCCACTCCCGACCGGTTATCTTCCGCCGAAGCCAG
AGGTCGAGCTGCCACCCAAGACAGAGGAGCCACCGAAGCCGGAGCTGCCTCCACTCCCGACCGGT---------------
---------GAGCTTGCACCGAAGCCAGAGCTGCCGCCACTCCCTACCAGTGAGCTTGCACCGAAGCCGGCGCAGCCGCC
ACTGCCCAAGCCCGCGGAGCCAAAACCATGATCACTC--AACCACGAAGGATTCCATGCATGGTGCATGATATATTTTGA
GTCCTCTGTCC----ATGACGAGCTAGCGTGGCCTGCCTGTCATCCATGACTTATGAGTCCTCTGTCCATGAGTACGTAC
CTGTCGAGTTATTGAGAGTATTTGAGATCGTACTAGCACACATATCCGTGCGCTGCAACGGGAG-------AGTACGCAT
TTAAAATCAGTGAGAATTATATGTGCAAGCAAAACCC-TGTGTGCACACGAAAAAGGAATATTTAGCTTCTCGGTTTCGC
CTCGTGTGAAGGAT--TCGTGCAGCTATTTTTCCATTAATTGATCAAGGACATTTAAGAGTTTTGTTACGTCATCGTACG
TCAGGGAAGT-CCCAT--GTTATTCAATCT----AC----CCTTTCAATCCTTTCAATCGAGGGGATTTTAAGTTTCGAA
ATTTCTGAATATTCTAGGAAACATGAACAATTTTTT-AAATATTAAATAGTT-TTTG--AAAATTATGTACACTATCAAA
AAAATGCGAACAAAATATGAAAGGGAGCATCTTTTAAAATTCACAAACATTTTCTGAAAACAATGAC-TTTTTA--TTAA
AAACATGAAGATTATTTGAATTTGTAAACA-TTTTTG-A---AGA-CGGGAACATGCGTTGAAAATTCATAAGATTTCTA
GAAAATGTGTATCTTTTATAATCGAATATTATTTTAAATTTTGAAATTTTTGCTACAACATAAATATTTTTCTAATTTGG
AGCATTTTTTGAAATGCCATTTTCTTTTTAGAAATCTTGAACTATTTTTTTAA------AAAAATA--TTTTTAAAAAAA
ATGGGCAAATTTTTGCATGTTTCGTATATTTTTCAAAATAGCAAC-AAATTTTGGAATTTCGAACATTTTCCAAAATTTG
TTT--TTTTAATTCTGAATATT-TTTTGAGAATTTCTAATTTAAGAAATAAATTCTAAACGAAATATGTATATGGTAACC
CTGTGGCAGATTGCAAAACGATCTAACCCATCCAGCACCGTCA
>chr2D_283
CAAGA---------------------------------------------------------------------------
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------------------------------------------------ATATAAAAAAAATGTTTTTTCTCAACAACAGG
AAAACCAATAATAATCTCGACGCACG--TCATTGCGTGTTAACAAAAAAAAT------------------CTTGGCGATC
ACGATGCACGGACAGGCCGGCACTCTCCTCCTGGCTCCTGGGAGTGAGTAGAACTAGCTCGTCAA-CAAAACGTGAAACG
TACCAGTCCCGCAGTCTGAAGCAACCAACGGCGTGACCTCGCACATTCT--AAAAAACGTGATTCCGCAGGAATTCCTCT
TGCAGT-------AATAAATCCATCGAAATCAGGTTAAGTACCCGGAAAACGATGGAAATCAACCGACTGATTTCAGCGC
GTCGTAAGCCGCCTCGTTTTCGTGACACGTGTCCCCTCACACGCTCTCCCCCTACCTCCGCATAACCACTCATCCCTGGC
ATCCTTATCCTTTCCCGTCCCCCGACCCGGCCTCCATACTCGACCCCACCTCACCCCCCGCCCTCGCCATCGACGACGCG
CCTCCTCTACTGTAGCGGCGACCCGAGATCCGCCCTTCCCCGACGACCATGCCGGTGGCGCAGGCGGGAGGGCAACTCGT
GCCCGCGGACAGCGCCTCGTCCCGCAGGAACCGCCGCCGCCAGAAGAAGTCCTCCAACGCCAACGCCGCGGCCGCGGCTG
CCCCCGTGGTCGCTGTTCCGGCGCCGGTGCCGCCCACGCCGATGCAACGCCTCTTCGACACCAGCCACGAGGTCTTCGCC
GGCTCCGCCACCGGCTTCGTCCCCCCGCCCGACGTCGTCGCCCGCCTCGCCGCAATCCTCAGTGAGCATCCCCTCTAGCG
CCGTCATGCTACGTGGGGGTCACCGGTGCTGCTATGGTGGAGCTGCAATGCAACACCGGTGGCGGAGCTGCAACGCTGCG
TGCATGGACCTCAAGTCAACGGCGGCGTGGCAGAGCTGCGATGCAGCGCGTGTACTGCTGCGATGGAGCATGGACAGACG
GCTGCCGGTGCTGTGATGGAGCAGCTCCCTTGCTGCTATGGAGCATCGCCGGACCACCGGCGCTGCGATGAAGCAGCTCC
CTTGCTGCTATGAGCATCGCCGGACCACCGGCGCTGCGATGAAGCAGCTCCCTTGCTGCTATGGAGCATCGCCGACGCGC
CGCAGCTGCGATGCAGCGGGCGGTGCTGCAATGGAGCTGCACCGGCAGCTGCAATGGAGCTTCACCGGCAACGCCTGGAG
CTGTGATGCAGCGGGCGGTGCTGCAATGGAGCTTCACCAGCGACCTGAGATATGCGATGGAGCTTCACCTGCGACCTGAC
TCTCGGTGCTGCAGTGCAGAGCGCTTGCCGGCAGAGTCGGGTGCTACTATGGAGTGCCGCTGCACGGTGTTGAAGCTGCA
GTGAAGCCTCGTCCATGGTCGTCGGCCGGCGAGGGATGCGGCGCTGCTTTTCCCACGACGACACACTTTCGTTTGCTCCC
GTCGTCGCTGCATTGAGAGGAGGGGACGACCCCGCGAGATGATGTTGACCAAATCCAACGGGTGGCGAGAGTCGGATCTG
ATGGCCCAGGACCCGACGGATTTCTTAGAGAAATCAGTCGGTTGACGCCTAGCAGCGGCCTAAGTACCCGCCTCTTGACG
CTTGGAACGTCTGAGGTCATTTTTTTTCCTCTTCTTTTTTGACCGGACGACAGGTTAATTTCGTGTCCAGATTGTGTGAC
ACTGACCCATACGCGCCCGGCGGTTTTATCCGGGCAGGCAACGTCGCAGTAGTG--------------------------
--------------CCCGATTCTGCAACGT--CATACGGGACGAGTACGAAAACGTAACACGAATTAAGTGCCAGGAAGA
A---ACGCAGCGCAGTTACGCAGGCGATC--------------------GATCTTGGGTGTAACGCATCGCCACG-----
-----------------------------CCATCGGCTCCGTCCGATGAGCGCCCCCTATAAAATGTTGTACCCTCGCCT
TTGTTTCTCTTCACCCCACACCG--------------------TTCTTGACTAGTCCGGT----GAAGCCAGCCATGGCT
TCCAAGATCGCCAGCATGTCCTCCTCCCTTGTGGCGCTCCTCCTTGGCGTGCTGCTGCTCTCGCGCGGCGGCATCAGCAA
CGCGGCGCGGCACCTGGAGGAGGCGGAG---------GTGCCGCCTGATCTCCCGGCACCTCTGCCCAGGCCGGACGTGC
TGCCGCCGCTGCCCAGACCCGACGTGCTGCCAAAGCCGGAGCTGCCGCCGCTGCCCATACCCGACGGGCTGCCCAGGCCG
GAGCTGCCGCCGTTGCCCATACCGGACGTGTTGCCAAAGCTGCCGTTGCCGGAGCTGCC------------------GCC
GTTGCCTACGCCTGACGTGCTGCCGGTGCCGGAGCTGCCGCCGC------------------------------------
TGCCCAAACCTGACGTGGAACCAGCGCCAGAGTTGCCACCATTGCCCAAGGGTGAGGAGCGACCGAAGACGGAGCTGCCC
CCGCTGCCAACGGGTGAGATCGCACCAGAACCGGCTCTGCCGCCTCTTCCTACAGGCGACCTTCCGCCCAAAGG------
------GCTACCCAAGATAGACGAGCCGACGAAGACGGAGTTGCCTCCACTCCCGACCGGTGACCTTCCGCCGAAGCCAG
AGGTCGAGCTGCCACCCAAGACAGAGGAGCCACCGAAGCCGGAGCTGCCACCCAAGACA---------------------
---------GAGGAGCCACCGAAGCCGGAGCTGCCTCCACTCACTACCGGTGAGCTTGCACCGGAGCCGGCGCAGCCGCC
ACTGCCCAAGCCCGCGGAGCCAAAACCATGATCACTC--AACCACGAAGGATTCCATGCATGGTGCATGATATATTTTGA
GTCCTCTGTCC----ATGACGAGCTAGCGTAGCCTGCCTGCCATCCA---------------------------------
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>chr2B_416
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-------------------GCACTCTTCTCCTGCCTCGTGGGAGTGAGTAGAACTAGCTCGTCAA-CAAAACGTGAAACC
TACCAGTCCAGCAGTCTCAAGCAACCAATTGCGTGATCTCGCACCTTCT--AAAAAACGTGATTCCGCAGGAATTCCTCT
CGCACT-------AATAAATCCATCGAAAGCAGGTTAAGTACCCA-----------------------------------
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----------------------------------------------------------------------CCTCTTGACG
CTTGGAACGTCTGAGGTCATTTTTTC-CCTCTTATTTTTTGACCGGACGACAGGTTAATTCCGTGTCCAGATTGCGTGAC
AGTGCCCCATAAGCGCCCGGCGGTTTTATCTGGGCAGGCAACGTCGCAGTAGTGTA-AACCGCAGCAACCGATCCGGTCG
----GCCCCGCTTGCCCGATTCTCCAACGCGCCACACGGGCCAAGTACGAAAACGTAAGACGGATTAAGTGCCAGGAAGA
AGAAACGCAGCGCACTTACGCAGGCGATC--------------------GATCTTGGGTGTAACGCATCGCCACG-----
-----------------------------CCTAT---------------------------AAATGCAGTACCCTCGCCT
TCGTTTCTCTTCACCCCACACCG--------------------TTCTTGACCAGTCCAGT----GAAGCCAGCCATGGCT
TCGAAGATCGCCAGCATGTCCTCCTCTCTTGCGGCGCTCCTCCTCGGCGTGCTGCTGCTCTCACGCGGCGGCATCGGCAA
CGCGGCGCGGCACCTGGAGGAGCCGGAG---------CTGCCTCCGGATCTCCCGGCACCTCTGCCCAGGCCGGACGTGC
TGCCGCCGCTGCCCATACCCGACGTGCTGCCAAAGCCCGAGCTGCCGCCGCTGCCCACACCTGACGAGCAGCCCAGGCCG
GAGCTGCCGCCGTTGCCCATACCGGACGTGTTGCCAAAGCTACCGTTGCCGGAGCTGCC------------------GCC
GTTGCCTACACCTGACGTGCTGCCGGTGCCGGAGCTGCCGCCGC------------------------------------
TGCCCAAACCTGACGTGGAACCAACGCCAGAGCTGCCACCCGTGACCAAGGGTGAGGAGCGACCGAAGACGGAGCTGCCG
CCGCTGCCAACCGGTGAGATCGCACCGGAACCGGCTCTGCCGCCTGTTCCTACAGGCGACCTTCCGCCCAAAGG------
------GCTACCCAAGATAGACGAGCCGACGAAAACGGAGCTGCCTCCACTCCCGACCGGTGACCTTCCGCCGAAGCCAG
AGGTCGAGCCACCACCCAAGACAGAGGAGCCACCGAAGCCGGAGCTGCCTCCACTCCCTACCGGT---------------
---------GAGCCTCCACCGAAGCCGGAGCTGCCGCCACTCCCCACCAGTGAGCTTGCACCGAAGTCGGCGCAGCCGCC
ACTGCCCAAGCCCGCGGAGCCAAGACCATGATCACTC--AACCACGAAGGATTCCATGCATGGTGCATGATATATTTTGA
AACCTCTGTCC----ATGACGAGCTAGCGTGGCCT---------------------------------------------
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>chr2D_719
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----------------------------TCTGGGTAGGCAACGTCGCAGTAGTGTATAACCGGAGCAACCGATCCGGTCG
ATCGGCCCGGCTGGCCCGATTCTCCAACGT--CACACGGGGCGAGTACG-AAACGTACCACGGATTAAGTGCCAGGAAGA
A---ACGCAACGCAGGTGATCCGTCTTC---TCTGCCAACTAACGTACTGAACTTGAGTGCAACGCATTACGAATTTA-C
GATCGGCTCCGTACGATGAGCGAACGCCTCCTAT---------------------------AAATGCCTCGCCCTCGCCT
TCGTTTCTCTTCACCCCAGCAAGGAGAACGCGCACCCTTCCTCTTCTTGATTAGCTCAGCGATCGGAGCCAGCCATGGCC
TCCGGGATCGCCAGCATGTCCTCCTCTCTTGCGGTGCTCCTCCTCGCCGTGCTGCTGCTCTCCCGCAGCGGCGTCGGCAA
CGCGGCGCGGCACCTGGAGGAGGCGGCGTACCCACCGGTGCCGCCTGTTCTCCCGGCACCTCTGCCCAAGCCGGACGTGA
CGCCGTCGTTGCCCGCACCGGAGGTGTTGCCGAAACCGGGGCTGCCACCGCTGCCCACACCTGAGGAGCAGCCCAAGCCG
GAGCTGTCGCCTTTGCCCGCACCGGACGTGTTGCCAGAGCCGCCGTTGCCCGCACCCGACGTGCTGCCCAAGCCGGAAC-
--TGCCCACACCTGACGAGCAGCCCAAGCCGGAGCTGCCGCCGTTGCCCAAACCGGAGGTCCCGCCGACGGTGCCGGAGG
TGCCCAAACCTGACGTGGAACCGAAGCCGGAGCTGCCACCCGTGCCCAAGGGTGAGGAGCCGCCGAAGACGGACCTGCCG
CCGCTGCCAACAGGTGAGATCCCACCAAAGCCGGTTCTGCCGCCTTTTCCTACAGGCGAGCTTCCGCCCAAGCCGGAGCC
CGAGCTGCTGCCCAAGACAGACGAGCCACCGAAGCCAGAGCTGCCACCACTCCCCACCGGCGAGATTCCACCGAAGCCGG
AGGTCGAGCTGCCACCCAAGACAGAGGAGCCCCCGAAGCCGGAGCTGCCGCCACTTCCGACTGATGACCTTCCATCGAAG
CCGGACGTCGAGCTGCCACCGAAGCCAGACCTGCCGCCACTCCCTACCGGTGAGCTTCCACCGAAGCCGGCGCAGCCGCC
ACTGCCGTATCCTGCGGAGCCAAAACCATGATCACTCTCAACCACCGACGAATCCATGCATGGTCCATGATATGTTT-GA
GTCCTGTGTCCATTTATGACGAGCTACCGTGGCATGCCTGACATCCGTGA------------------------------
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>chr2B_719
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----------------------------TCTGGGTAGGCAACGTCGCAGTAGTG--TAACCGGAGCAACCGATCCGGTCG
ATCGGCCCG---------ATTCTCCAGCGT--CGCACGGGGCTAGTACG-AAACGTACCACGGGTTAAGTGCCAGGAAGA
G---ACGCAACGCAGGTGATCCATCTTCTCTTCTGCCAACTAACGTACTGAACTTGAGTGTAACGCATTACGAATTTA-C
GATCGACTCCGTACGACGAACGAACGCCTGCTAT---------------------------AAATGCCTCGCCCTCGCCT
TCGTTTCTCTTCACCCCAGCAAGGAGAACGCACACCATAT-TCTTCTTGATTAGTTCAGCGATCGAAGCCAGCCATGGCT
TCCGGGATCGCCAGCATGTCGTCCTCTCTTGCGGTGCTCCTCCTCGGCGCGCTGCTGCTCTCCCGCAGCAGCGTCGGCAA
CGCGGCGCGGCACCTGGAGGAGGCGGAGTACCCACCGGTA------------------------CCCAAGCCGGACGTGC
CGCCACCGTTGCCTGTACCGGAGGTGCTGCCGAAGCCGGGGCTGCCACCGCTGCCCGCACCTGAGGAGCAGCCCAATCCG
GAGCTGCCGCCGTTGCCCACACCGGACGTGTTGCCAGAGCCGCCGTTGCCCGCACCCGACGTGCTGCCGAAGCCGGGGC-
--TGCCCACACCTAACGTGCAGCCCAAACCGGAGTTGCCGCCGTTGCCCAAA---------------------CCGGAGG
TGCCCAAACCTGACGTGGAACCGAAGCCAGAGCTGCCACCCGTGCCCAAGGGTGAGGAGCCACCGAAGACGGAGCTGCCG
CCGCCGCCAACAGGTGGGATCCCACCAAAGCCGGTTTCGCCGCCTCTTCCTACAGGTGAGCTTCCGCCCAAGCCGGAGCC
CGAGCTGCTGCCCAAGACAGACGAGCCATCGAAGCCAGAGCAGCCTCCACTTCCGACCGGTGAGATTCCACCGAAGCCAG
AGGTCGAGCTGCCACCCAAGACAGAGGAGCCACCGAAGCCGGAGCTGCCGCCGCCTCCGACCGGTGACCTTCCACCGAAG
CCGGACGTCGGGCTGCCACTGAAGCCAGACCTGCCGCCGCTCCCTACCAGTGAGCTTCCACCGA---CGGCGCAGCCGCC
ACTGCCGAATCCCGCGGAACCAAAACCATGATCA--CTCAACCACCGACGAATCCATGCATGGTCCATGATATGTTT-GA
GTCCTGTGTCCATT-ATGACGAGCTACCGTGGCATGCCTGACACCCGTGATTTGTTTGTACTACGT---------CGTAC
CTGCTGAGCTATTGGGAGTGTTTGAGATCTTATGCATACATAT-------------------------------------
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>chr2D_1903
TTTGAGAAGTACTAGCACATATGC--------------------------------------------------------
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---------------------------------------------CCGTGCGTTGCAACGGAAGATAAAATAATACGCAT
TTAAAGTCAGTGAGAATTATATGTGCAAGCAAAATCC-TGTGTGCAAAC-AAAAAGGAATATTTAATTTCTCGATTTCGC
CGCGTGTGAAGGAT--TCAGTCAGCTATTTTTCAATTAATTGATCGAGGGCATTTAAGAGTTATGTTACGTCATCGTACG
TCAGGGAAGG-CCCACAAGTTATTTAATCT----ACTCTTCCTTTCAATCCTTTCAATCGAGGGGATTTTCAGGTCCGAA
GTTTCTGAATATTTTAGGAAACATGAACAACTTTTA-AAATCTTAAACAAAT-TTTG--AAAATTCTGTACACTTTCAAA
AAAATGCGAACAAAATATGAAAGGGGGCATCTTTTAAAATTCACAAACATTTTCTGAAAACATCAAG-TTTTTT--ATAA
AAAGATGAACATTACTTGAATTTGTGAGCACTTTTTT-A---AAA-CGGGAACATGTGTTGAAAATTCATAAGATTTTCA
GAAAATTGGTATCTTTTATAGACAACCATTATTTTAAATGTTGAATAGTTTACTAAAACATAAATATTTGTTAAATTTGG
AGCATTTTTTGAAATGACCTTTTATTTTTAGGAATCTTTAACAATTTTAATAAAA-----ATTGGTTTTT------TAAA
AAGGGCAACTTTTTGCATCTTTCGAATATTTTTCAAAATAGCAGCAAAATTTTGGAATTCTGAACATTTTCCAAATTTTG
TTT--TTA-AATTCTGAACGTT-TTTTGAGAATTTCTAATTTACGAAATATATTCTAAAAGAAA----------------
-------------------------------------------
>chr2D_1914
----------ACTAGCACATATGC--------------------------------------------------------
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---------------------------------------------CCGTGCGTTGCAATGTGAGATAAGATAGTATGCAT
TTAAAGTTAGTGAGAATTATATGTGCAAGCAAAAACCTTGTGTGCACAC-GAAAATGAATATTTAGTTTTTCGGTTTCGC
CGCGTGTGAAGGAT--TCAGTCAGCTATTTTTCCATTAATTAATTGACGGCATTTAAGAGTTTTGTTACGTCATCGTACG
CCAGAGAAGCACCCTTGAGTTATTCAATCTACTCAC----CCTTTCAATCCTTTCAATCGAGGGGATTTTAAGGTCCGAA
GTTTCTGAATAAGCTAGGAAACATGAACAATTTTTT-AAATCTTGAACAGTT-TTTG--AAA-TTATGTACACTTTCAAA
AAAATGAGACCTAAATATGAAAGGAAACATATGTTAAAATTCACAAACATTTTCTGAAAACATCACCTTTTT----ATAG
AAACATGAACAATATTAGAATTTGTGAACA-TTTTTT-T---AAA-CAGGAACATGTGTTGAAAATTCATAAGATTTTTA
GAAAATCTGTATCTTTTATACACTAACATTATTTTAAAATTTTAAAAAATTTCTAAAACATAAATATTTTTCAAATTTGG
AGCATTTTTTAAAATGCCATTTTATTTTTATAAATCTTTAACAATTTTTAAAAAC-----AATAAA--GTTTTTCAAAAA
ATGGGCAACTTTTTGCAAGTTCTGAATATTTTTCAAAATAGCAACAAAATTTTGGAATTCTGAAAATTTTCCTAAATTTA
TTTATTTTTAATTCTGAACG-T-TTTTTAGAATTTCTAATTTATGATATAAATCTAGAAGAAA-----------------
-------------------------------------------
>chr4A_1914
----------ACTAGCACACATAC--------------------------------------------------------
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---------------------------------------------CCGTGCGTTGCAATGGGAGA-------GTGCGCAT
TTAAAGTCAGTGAGAATTATATGTGCAAGCAAAACCC-TGTGTGCACATGAAATACGAATATTTAGCTTCTTGGTTTCGC
CTCGTGTGAAGGAT--TCAGGCAGCTATTTTTCCATTAATTGATCAAGGGTATTTAAGAGTTTTGTTACGTCATCGTACG
CCAGGGAAGG-CCCATTAGTTATTCAATCT----AC----CCTATCAATCCTTTCAATCGAGGGGATTTTAAGGTTCGAA
GTTTCTGAATATTCTAGGAAACATGAATAATTTTTT-AAATATTAAATAGTT-TTTG--AAAATTATGTACACTATC-AA
AAAATGCGAACAAAATATGAAAGGGAGCATCTTTTAAAATTCACAAACATTTTCTGAAAACAACAACTTTTTTT--ATAA
AAACATGAAGATTATTTGAATTTGTAAACATTTTTTT-A---AAA-CGGGAACATGTGTTGAAGATTCATAAGATTTCTA
GAACATGTGTATCTTTTATAATCAAACA-TATTTTAAATTTTGAAATTTTTGCTACAACATAAATATTTTTCGAATTTGG
AGCATTTTTTGAAATTCCATTTTCTTTTTAGAAATCTTGAACTATTTTTAAAAAC-----AATAA---TTTTTTTAAAAA
ATGGGCAACTTTTTGCAAGTTTCGAATATTTTTCAAAATAGCAAC-AAATTTTGGAATTCTGAACATTTTCCAAAATTTG
TTT--TTTTAATTCTGAATATT-TTTTGAGAATTTCTAATTTAAGAAATAAATTCTAAAAGAAA----------------
-------------------------------------------
>chr7D_1914
----------ACTAGCACATATGC--------------------------------------------------------
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---------------------------------------------CCGTGCGTTGCAACGAGAGATAAAATAGTATGCAT
TTAAAGTCAGTTAGAATTATATGTGCAAGCAAAACCC-TGTGTGCGCACGAAAAAGGAACATTTAACTTCTCGGTTTCGC
CGCGTGTGAAGGAA--TCAATCCGCTATTTTTTCATTCATTGATCAAGGGCATTTAAGAGTTTTGTTACGTCATCGTACG
CCAGAGAAGG-CCCATGAGTTATTCAATCT----ACTTTTCCTTTCAATCCTTTCAATCGAGGCGATTTTAAGGTATGAA
GTTTCTGAATATTCTAAGAAACATGAACAATTTTTT-AAATCCTGAACATTTATTTG--AAAACTATGTACACTTTT-GA
AAAACGCGAACGAAATGTGAAAGCGGACATCTTTTAAAATTCACGAACATTTTCTGAAAACATCAACTTTTTTT--ATTA
AAAAGCATGA---ATTTGAAATTGTGCACA-TTTTTT-A---AAA-CGGGAATATGTGTTGAAAATTCATAATATATTTA
GAAAATGTGTATCTTTTATACACGAATATTTTTTTAA-TTTTGAAAATTTCACTTAAAAAAGAATATTTTTCAAATTTGG
GGCATTTTTTGAAAAGCAATTTTCTTTATAGAAATCTCGAATAATTTTTAAAAAATG----AT-G---TTTTTTGCAAAA
ATGGGAAACTTTTTGCAAGTTCCGAATATTTTTCAAAATAGCAACAAAATTTTGGAATTCTGAACATTTTCCAAAATTTG
TTT--TTT-AGTTCTGAACATT-TTTTGAGAATTTTTAGTTTATGTAGTAAATTCTAAAAGAAA----------------
-------------------------------------------
>chr1D_1914
----------ACTAGCACATATGC--------------------------------------------------------
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---------------------------------------------CCGTGCGTTGCAATGGGAGATAAAATAGTATGCAT
TTAAAATCAGTGAGAATTATATGTGCAAGCAAAACCC-TGTGTGCACATAAAAAAGAAACATTTACCTTCTCGGTTTTGC
CGCATGTGAAGGAAAATCAATCCACTATTTTTCCATTCATTGATCAAGGGCATTTAAGAGTTTTGTTACGTCGTCGTATG
CCGGAGAACG-TCCATGAGTTATTCAATCT----ATGCTTCCTTTCAATCCTTTCAATCGAGG-GATTTTAAGGTATGAA
G-TTATGAATATTCTAGGAAACATGAACAATTTTTT-AAATTCTGAACAGTT-TATTGCAAA-TTATGTACACTTCCAAA
AAAAGG-GAACACAATATGAAAGGGAACATCTTTTAAAATTCACAAGCATTTTCTAAAA-CACCAAC-TTTTTT--ACAA
AAACATGAACATTATTTGAATTTGTGCACA-TTTTTT-A---AAAACGGAAACATATGTTGAAAATTCATAATATTTTTA
GAAAATGTGTATCTTTTACACACAAGAATTATTTTTAATTTTGAAAATTTCACTAAAACATGATTATTTTTCGAATTCGG
AGCATTTTTTGAAATGTCATTTTCTTTTTAGAAATGCTGAACAATTTTGAAAAAC-----AAT-A---TTTTTTTCAAAA
AAGGGAAACTTTTTGCAAGTACCGAATATTTTTCAAAATAGCAACAAGATTTTGGAATTCTGAACATTTTCCAAAATTTG
TTT--TTTTAATTCTGAACATT-TTTTGAAAGTTTCTAATGTATCAAATAAATTTTAAAGGAAA----------------
-------------------------------------------
>chr6D_1921
---------------CACATATGC--------------------------------------------------------
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---------------------------------------------CGGTGCGTTGCAACGGGAGATAAAATAGTATGCAT
TTAAAATCAGTGAGAATTATATGTGCAAGCAAAGCCC-TGTGTGCACATAAAAAAGAAACATTTACCTTCTCGGTTTCGC
CGCGTGTGAAGGAAAATCAATCCGCTATTTTTCCATTCATTGATCAAGGGCATTTAAGAGTTTTGTTACGTCGTTGTATG
CCGGAGAACG-TCCATGAGTTATTCAATTT----ACACTTCCTTTCAATCCTTTCAATCGAGG-GATTTTAAGGTATGAA
GTTTATGAATATTCTAGGAAACATGAACAATTTTTTTAAATTCTGAACC-GT-TTTTGAAAA-TTATGCACACTTCCAAA
AAAACGCGGACACAATATGAAAGGGAACATCTTTTAAAATTCACAAGCATTTTCTAAAA-CACCAACTTTTTTA----AA
AAACATGAACATTATTTGAATTTGTGCAAA-TTTTTTTA---AAA-TGAGAACATATGTTGAAAATTCATAATATTTTTA
GAAAATGTGTATCTTTTATACACGAACATTATTTTTAATTTTGAAAATTTCACTAAAACATGATTATTTTTCAAATTCGG
AGCATTTTTTGAAATGTCATTTTCTTTTTAGAAATCTTGAACAATTTTGAAAAAC-----AAT-AA--GTTTTTTCAAAA
AAGGGCAACTTTTTGCAAGTACCGAATATTTTTCAAAATAGCAACAAGATTTTGGAATTCTGAACATTTTCCAAAATTTG
TTT--TTTTAATTCTGAACATT-TTTTGAGAGTTTTTAATTTATGAAATAAATTCTAAAGGAAA----------------
-------------------------------------------
>chr2A_1947
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-----------------------------------------------------------------------AGTATGGAT
TTAAAGTCAGTGAGAATTATATGTGCAAGCAAAACCC-TGTGTGCACATGAATAAGAAATATTTAGCTTCTCGGTTTCGC
CGTGTGTGAAGGAA--TAAATCCGCTATTTTTCCATTCATTGATCGAGGGCATTTAAGAGTTTTGTTATGTCATCATACG
CCAGAGAAGG-CCCATGAGTTATTCAATAT----ACTCTTCCTTCCAATTCTTTCAATCGAGGGGATTTTGAGGAATGAT
ATTTCTGAATACTCTAGGAAATATGAACAATTTTTT-AAATCCTGAACAGGT-TTTTGAAAA-TTATGTACACTTTCAAA
AAAACGCGAA-AAAATATGAAAGGGAACATCTTTTAAAATTCACAAACATTTTCTGAAAACACCAAC-TTTTTT--ATAA
AAACATGAAAATTATTTGAATTTGTGAACA-TTTTTT-A---AAA-TGGGAACATGTGTTGAAATTTCATAAGAATTTTC
GAAAATGTGTATATTTTATACACGAACATTATTTTTAATTTCAAAATTTTCACTAAAACATGAATATTTTT-AAATTTGG
ATCATTTTTTGAAATGCCACTTACTTTTTAGAAATCTTGAACAATTTAGAAAAAC-----AAT-AA--TAGTTTTAAAGA
ATGGGCAACTTTTTGCAAGTTCGGGATATTTTTCAAAATAGCAACTAAATTTTAGAATTCTGAAT-TATTTCAAAAATTG
TTT--TCTGAATTTTGAACTTT-TTT--AGAATATTTAATTTAGGAAATAAATTCTAAAAGAAA----------------
-------------------------------------------
>chr4B_1947
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-----------------------------------------------------------------------AGTATGCAC
TTAAAGTCAGTGAGAATTATATGTGCAAGCAAAACCT-TGTGTGCACACGAAAAAGGAATATTTAGCTTCTCGGTTTCGC
CGCGTGTGAAGGAT--TTAGTGAACTATTTTTCCAATAACTGATCAAGGGCATTTAAGAGTTTTGTTACGTCATCGTACG
CCAGATAAGG-CCCATGAGTTATTCAATCT----ACTATTCCTTTCAATCCTTCCAGTCGAGGGGATTTT-AGGTCCGAA
GTTTCTGAATATTTTAGGAAACATGAACAAATTTTT-AAATCTTGAACA-GT-TTTAAAAAA-TTATGTACACTTTCGAA
AAAATGCGAACAAAATATGAAAGGAC-CATCTTTTCAAATTCACAAACAATTGCCGAAAAGATCAATTTTTTTA----TA
AAACATGAACATTATTTGAATTTTTGAACA-TTTTTT-T---AAA-CAGGAGCATATGTTGAAAATTCGCAAGAGTTTTA
GAAAATGTGTGTCTTTTATGCACGAACATTATTTTAAATTTTGAAAAATTTACTAAAACATAAATATTTTCCAAATTTGG
AGAATTTTTTGAAATGCCATTTTCTTTTTAGAAATCTTGAACAATTTTGAAAAAATAATAAAAATA--TT------AAAA
GTGGCCAGCTTTTTGCAAGTTCCGAATATTTT-CATAATAGAAACAAAATTCTGAAATTCTCAACATATTCCAAAATTTG
TTT--TTTTAATTCTGAACGTC-TTTTGAGAATTTCTAATTTACG-AATAAATTCTGAAAGAAA----------------
-------------------------------------------
>chr2D_1954
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------------------------------------------------------------------------------AT
TTAAAGTCGGTGAGAATTATATGTGCAAACAAAACCC-CGTGTGCACAC-AAAAAGGAATATTTAGCTTCTCGGTTTCGC
CGCGTGTGAAGGAA--TCAATCCGCTATTTTTCTATTCATTGATGGAGGGCATTTAAGAGTTTTGTTATGTCATCGTATG
CCAGAGAAGT-CCCATGAGTTAGGAATAT------CTAATTCTTTCAATCCTTTCAATCGAGGGGATTTCAAGGTATGAA
GTTTCTGAATATTTTAGGAAATATGAACACTTTTTT-AAATCCTGAACAATT-TTTTTAAAA-TTAAGTACACTTTTAAA
AAAATT-GAACAAAATATGAAAGGAAAAATCTTTTAAAATTCACAAACATTTTCTGAAAACACTAAC-TTTTTTTTATAA
AAATATGAGCATTATTTGAATTTGTGAACA-TTTTTT-TTTAAAA-CAGGAACATGTGTTGAAAAGTCATAAGATTTTTA
GAAAATGTGTATCTTTTATACACGAACATTATTTTTAATTTTCAAAATTACAGTAAAACATGAATATTTTTCAAATTTGG
AGCATTTTTTGAAATGCCATTTTCTTTTTAGAAATCTTGGACAATTTTGAAAAAC-----AAT-AG--TTTTTTT---AA
ACGGGCAACTTTTTGCAAGTTCCGAATATTTTTCAAAATAGCAACAAAATTTTGGAATTCTGAACATTTTCCAAATTTTG
TTT--TCCTTATTCTGAATGTTGTTTTGGGAATTTTTAATTTATGAAATAAATTCTAAAAGAAA----------------
-------------------------------------------
>SNPs
SS-SS-S--SSS------SSSS-SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS---------SS---------------------
---SS-------------------S-SS--------S----SS--S-----SSSSSSSSSSSSSSSSSSS----------
-S------------S--S-------------S------------------------------SSSS--------------
------S----S-----------------------------------SSSS------S-----------------S----
------SSSSSSS--------------------------S----------------------------------------
--------------------------------------------------------------------------------
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-------------S-------------S--------------------------------------S-------------
---------------------------S----S-----------------------------------------------
---------------------------------------------S---------------------------S------
---------------------------------------------------------------------------SS-S-
------------S---------SSSS------------------------------------------------------
--------------------------------------------------------------------------------
-S------------------------------------------------------------------------------
----------------------------------------------------------------------------S---
------------------------S--------------------------------------S----------------
-----------------------------------------------------------SSS-S-----S---S-S----
---------------------------------------S----------------------------------------
------------------------S------------------------------------------------------S
---------------------------S-----------------------------------S----------S-----
-------------------------------------------------------------S-S----------------
--------------------------------------------------------------------------------
---------------S----------------------------------------------------------------
--------------------------------------------------------------------------------
----------------------------------------S---------S--S-SS--S--SS--SSSSSSSSS-----
---SS---S-----S----S---------S--SSSSS---S--SS-------S---------------------------
--------------------------------------------------------------------------------
------------------SS-----------------------------S------------------------------
-------------------------------------------------------------------------S------
--------------------------------------------------------------------------------
----------------------------------------------------------------S-----------S---
------------------------------------S------S------------S-----------------------
------------------------------------------------------------------------S-------
-------------------------------------------------S-----------------------SS-----
--------S---------------S----------------------------------SS-------------------
-----------------------------------------------------------S----SSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
>forward_418
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------------------------------------------------------------------------------TC
ATGATGCACGGACAAGCT--------------------------------------------------------------
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>reverse_3877
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------------------------------------GAAGACGGGAACATGCGTTG------------------------
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-------------------------------------------
