>input_sequence_69611
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
-------------------------------------------------------------------CGCTCTCACAAGC
AAACAAACACTCGCAATTAATCCTCCCAAACTTTACAAACTTCTTCTTTTTACGTAGAGCAGTAGCACACAATGTCCACG
GCGCCGCCGCAAGCGAACCACCAGCAGCAGCAGCAGCAGCGCCACCGGAGGCTGCGGGTGCGGCGGGTGTTCGACCTCTT
CGACCACGACGGCGACGGCGTCATCACCGCCGCCGAGCTCTCGGGCGCGCTGGGGCGCCTGGGGCTCGCCCTGGGCGCGC
AGGCGGACGGGCTCGTCGCCGCCTACGTCGCGCCC---------GGCATGCCCGGCCTGCGGTTCGCGGACTTCGAGGCG
CTCCACGCCGAGCTCGGCGGCGGAGGCGAGGAGGACGAGGAGGCCGAGATGAGGGAGGCGTTCGCCGTGTTCGACGAGAA
CGGCGACGGGTACATCTCCGCGGCGGAGCTGCAGGCCGTGCTGGAGCGGATGGGGGTGCCGGAGGCGGCGTGCATGGCGC
GGGTGCAAGGCATGATCGCCGCGCATGACCGGGACAGCGATGGCCGCGTCGACTTCCATGAATTCAAGGCCATGATGGCT
GCCGGTATGTAAATGTAATAGCTTAGTTATAAGAAGAATCTGATTTCTCGTTCCAAGTCATGTACTACTAGTTTACTAC-
--------------------------------------------------------------------------------
-------------------------------------------------TAC----------------------------
----------------------------------------------------------------GTGCTAGCTATATGTA
CAAGCTAGTCTTGTCATGTTTTTTCTTTTCTTTGTT-GGAGGCAAAGCTAATCTGTCATGTGCATACTGCATAACTGTCA
AAAA---A--TGTGCATAGTCATC--------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
----------------------------------------------------------
>chr5D_1_TraesCS5D01G348900
TGAACCACATCCGTCATAATTCTCCATCACCGATCCAATGCCTACGAGCTTTTCACATATTGTTCCTCGCTTATTTACTT
TTTCGTTGCTATTGTTACAATCACTACAAAACCCAAAAATATTACTTTTGCTGTTGTTACCGTTACTTCCATACTACTTT
GCTACTAAATAATTTGCTGCAGATATTAAGTTATCCAGGTGTGGTTGAATTGACAACTCAACTGCTAATACTTGAGAATA
TTTTTTGGCTCCCCTTGTGTCGAATCAATAAATTTGGGTTGAATACTCTACCCTCGAAAACTGTTTCGATCCTCTATACT
TGTGGGTTATCAGACGTCTGGACGATCCACGGACTGATAGGGTATCACGTTGGATTGCAAAATCCGTCCGGACC-CTATG
TCCAGATGGTTGCAGGCGGTTTAAAGGTCCGTGTTGAAAATGTACCTAAAGATTGATTTGCAGGAAAAGGACGGCACCTA
TTGTTGGTTGGTAGT--------GATAGGAGAAACTAACTATTGTTGATTTGAAAAACAGTCATTTGCTAAATAGACACT
TCATTATTCTTTATTTTTTAATTGTATAAAATATGGAGCCCATTTGCAGCGATGTTCC-------------GTAAGTCCT
GTTTTATTTATTTATTTTTCCTTTTTTCCTCCTTCTCACCCGTTTCAGCGTCAAGACCGTGTGCTTGCCGCGTTGACAGC
TTACAACTTGCATCAGCCACGACAAAGCTCCATTGATAACGGTTGGAGCTGGCGTATACAGCAAGCAAGTACCATATGTC
ACAACGCGTTGCGTGTATAAACAATCGATTGGATTAGTTTGATTACGTACGTATTACTTTCGATTGTGGAATAGGAAATG
ATGACCTTCCCAGACTACAAGGTTGACATCTATAGGAGCCCATCGTATTTGGTCAAGTCGTTCTCTGTGGAGTGC----C
GTCTATCCTTTTCATTTGGCAAACAATGGCTGGCTC-CTTATATATACTCCCCCAAGCAACTTCATCCGCTCTCACAAGC
AAACAAACACTCGCAATTAATCCTCCCAAACTTTACAAACTTCTTCTTTTTACGTAGAGCAGTAGCACACAATGTCCACG
GCGCCGCCGCAAGCGAACCACCAGCAGCAGCAGCAGCAGCGCCACCGGAGGCTGCGGGTGCGGCGGGTGTTCGACCTCTT
CGACCACGACGGCGACGGCGTCATCACCGCCGCCGAGCTCTCGGGCGCGCTGGGGCGCCTGGGGCTCGCCCTGGGCGCGC
AGGCGGACGGGCTCGTCGCCGCCTACGTCGCGCCC---------GGCATGCCCGGCCTGCGGTTCGCGGACTTCGAGGCG
CTCCACGCCGAGCTCGGCGGCGGAGGCGAGGAGGACGAGGAGGCCGAGATGAGGGAGGCGTTCGCCGTGTTCGACGAGAA
CGGCGACGGGTACATCTCCGCGGCGGAGCTGCAGGCCGTGCTGGAGCGGATGGGGGTGCCGGAGGCGGCGTGCATGGCGC
GGGTGCAAGGCATGATCGCCGCGCATGACCGGGACAGCGATGGCCGCGTCGACTTCCATGAATTCAAGGCCATGATGGCT
GCCGGTATGTAAATGTAATAGCTTAGTTATAAGAAGAATCTGATTTCTCGTTCCAAGTCATGTACTACTAGTTTACTAC-
--------------------------------------------------------------------------------
-------------------------------------------------TAC----------------------------
----------------------------------------------------------------GTGCTAGCTATATGTA
CAAGCTAGTCTTGTCATGTTTTTTCTTTTCTTTGTT-GGAGGCAAAGCTAATCTGTCATGTGCATACTGCATAACTGTCA
AAAA---A--TGTGCATAGTCATCTACCTTTTGTAAGCAACGTCTCCTGTAGCCTCTGGATTTT-CCTCTCTGTTTCAGG
TTGTGTGTGTAGTTCCTTTTCATTTTTCTAGTTGGACAACTGTTCTGTTTCTTGTCATGTGACAATTGGTTTATTTATAA
AACGAAATAGAATTATTCCCCA-AAAAAGAAACAGAATTTCTTGTCTGGCAGGTTTATAAGGTTTTCACAGTTCTTACAA
AAAATCAATGTAGGTTTTAAAAAGTGTTCATGTATTTAAGAATCATTCATATAATTTTACAAGTGCCCACGTCTTTAAAA
TATATTTTTGCAGTTTTAGAAAAATGTTCATACATTAAAAAT-ATTTTTATACTTTTCAATAAATTATTTATACTTCCTT
GAAACAAAAATTAGTGGTTAAAATGGTAAGCATCCAAAAAA-TAACATAGAAATGAAAAAA-AAATGAAAAACACAACAA
GAAAGAAGGAATGAAAAATAAACAGAAAAGGAAATTGAGTGTATTTGTTGAGAAAAACTTACATATTATATAAAA----A
GGCTTTCTTCGAAAAATAGAAAAAGGAGACAAGATTTTTTTTAATATAT-------------------------------
----------------------------------TATATGAAAAGGCTTTATTGAAAATGACAAAGAGAAGAGAAAAGGG
GGAAAGAAAATACATTGGTACCATAAGAAAATGATACATTAATTGTTGGTCATCACGAACTAATCTGTGGTTGGACAGTT
AGGAAAACAGTGGTATCCCCGCCCATCAGGGTTCAAGTCTTAAACTTAACACCATAGCGACTTCGTCAATCTCAAAACGA
TGTGCCAGCCCAGTCTCTCAAAGATGCTCACAAAGGTAGGGTGTGCATGTGTGCATTCTAGGTGTGAGTATATATGTGTA
CATGGCCTCCATTTATAGCTCCCTTCAGAGCATCTCTAGCAGACCCCTTATATCCCACTGAACTGTAAAATAACCATCAG
TTTTCAATTTCGGACGGAAAAAGTAGGCCGAACAGACACATTTTACACCTTCGACCTT
>chr5A_332
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
-----------AGACGTCTGGACGATCCACGGATTGATAGGGGATCGCGTTGGATTGCAAAATCCGCCCGAACCGCTATG
TCCAAATTGTTGCAGGCGGTTTAAAGGTTCGTGATGAAGATGTACCTAAAGATTGATTTGCAGGAAAAGGACGGCGCCTA
TTGTTGGTTGGTAGT--------GGTAGGAGAAACTAACTATTGTTGAATTGAAAAACAGTCATTTCCTAAATAGACAGA
TCGCTATCCTTCATCTTTTAACGGCATAAAA---GGAGCCCGCAAAAAAAAAAGGAGCCCATTTCCAAGTTGTAAGTCCC
GTTTTATTTTTCC---------TTTTTCATCCTTCTCACCCGTTTCAGCGTCAAGACCGTGTGCTTGCCGCGTTGACGGC
TTACAACTTGCATCAGCCACGACAAAGCTCCATTGATAACGGTTGGAGCTGGCGTACACAGCAAGCAAGTACCATATGTC
ACAACGCGTTGCGTATATAAACAACCGACTGGATCAGTTTAATTACGTACTCC-TACTTTTGATTGTGGGATAGGAAATG
ATGACCTTCCCGAACTACAAGGTTGACATTCATAGGAGCCCATCGTATTTGGTCAAGTCGTTCTCTGTGGAGCGC----T
GTCTATCCTTTTCATTTGGCAAAACAA---TGGCTGGCTTATATATACACCCCCTAGCAACTTCATTCGCTCTCACAAGC
AAACAAACACTTGCAAC----CC------------CAAACTTTAACTTCTTACGT------GTAGCACACAATGTCTACG
GCGCCGCCGCAAGCGAACC------AGCAGCAGCAGCAGCGCCACCGGAGGCTGCGGGTGCGGCGCGTGTTCGACCTCTT
CGACCACGACGGCGACGGGGTCATCACCGCCGCCGAGCTCTCGGGCGCGCTGGGGCGCCTGGGGCTCGCCCTGGGCGCGC
AGGCGGACGGGCTCGTCGCCGCCTACGTCGCGCCCGGCATGCCCGGCATGCCCGGCCTGCGGTTCGCGGACTTCGAGGCG
CTCCACGCCGAGCTCGCCGGGGGAGGCGAGGAGGACGAGGAGGCGGAGATGAGGGAGGCTTTCGCCGTGTTCGACGAGAA
CGGCGACGGGTACATCTCCGCGGCGGAGCTGCAGGCCGTGCTGGAGCGGATGGGGGTGCCCGAGGCGGCGTGCATGGCGA
GGGTGCAGGACATGATCGCCGCGCATGACCGGGACAGCGATGGCCGCGTCGACTTCCATGAGTTCAAGGCCATGATGGCT
GCCGGTATGTAAATGTAATGGCTTAGTTATAAGAAGAATCTGATTTCTCGTTCCAAGTGATG-----------TACTGC-
--------------------------------------------------------------------------------
-------------------------------------------------TAGTTTACTACTACTCCCTCCGTTACAAATT
ATTTGTCGTGGTTTTACAAATTTGAACTAAAACCACGACAAGTAATTTGGAACCGAGGAAGTATGTGCTAGCTATATGCA
CAAGCTAGTCT-GTCATGTTTTTCCTTTTCTTTCTT-GGAGGCAAAACTAATCTGTCATGTGCATACTGCATAACTGTCA
AAAA---AAATGTGCATAGTCCTGTACCTTTTGTAATCAACGTCTCCTGTAGCATCTGGATTTT-CCTCTCTGTTTCAGG
TTGTGTGC--AGTTCCTTTTGA-TTTTCTAGTTGGACAACTGTT------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
----------------------------------------------------------
>chr5B_333
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
------------GACGTCTGGACGATCCACGTACTGATAGAGTATCGCGTTGGATTGCAAAATCCGTCCGGACCGCTATG
TTA---------------GTTTGAAGGTCCGTGTTGAAGATGTACATAAAGATTGATTTGCAGGAAAAAGACGGCACCTA
TTGTTGGTTGGTAGTTGTAGCCTGGTAGGAGAAACTAACTATTGTTGATTTGAAAAACAGTCATTTCCAAAATAGACAGA
TCACTATTC-TCATCTTTTAACGGTATAAAA---GGAGCCCATTTGCAGG-----TCC-------------ATAAGTCCC
GTTTTATTTTTCC----------TTTTCCTCCTTCTCACCCGTTTCAGCGTCAAGACCGTGTGCTTGCCGCGTTGACAGC
TTACAACTTGCATCACCCACGACAAAGCTCCGTCGATAACGGTTGGAGCCGGCGTATACAGCAAGCAAGTACCATATGTC
ACAACGCGTTGCGTGTATAAACAATCGACTGGATCAGTTTAATTACGTACTCC-TACTTTTGATTGTGGAATAGGAAATG
ATGACCTCCCCAGACTACAAGGTTGACATCGATAGGAGCCCATCGTATTTGGTCAAGTCGTTCTCTGTGGAGCGCCGTAC
GTCTATCCTTTTCATCTGGCAAACAATGGCTGGCTGGCTTATATATACGCCCCCTGGCAACTTCAGTCGCTCTCACAAGC
AAACAAACACTCGCAAT----CCTCCCAAGCTTTACGAACTTCTTCTTCTTGCGTATAGCACTAGCACGCAATGTCCACG
GCGCCGCCGCAGCCGAACCA---GCAGCAGCAGCAGCAGCGCCACCGGAGGCTGCGGGTGCGGCGCGTGTTCGACCTCTT
CGACCACGACGGCGACGGCGTCATCACCGCCGCCGAGCTCTCGGGCGCGCTGGGGCGCCTGGGCCTCGCCCTGGGCGAGC
AGGCGGACGGGCTCCTCGCCACCTACGTCGCGCCC---------GGCATGCCCGGCCTGCGGTTCGCGGACTTCGAGGCG
CTCCACGCCGAGCTCGCCGGCGGAGGCGAGGAGGACGAGGAGGCCGAGATGAGGGAGGCCTTCGCCGTGTTCGACGAGAA
CGGCGACGGGTACATCTCCGCCGCCGAGCTGCAGGCCGTCCTGGCGCGGATGGGGGTGCCGGAGGCGGCGTGCATGGCGC
GGGTGCGCGACATGATCGCCGCGCATGATCGGGACAGCGATGGCCGCGTCGACTTCCATGAGTTCAAGGCCATGATGGCT
GCCGGTATGTAAATGTAATGGCTTAGCTAAAC---GAATCTGGTTTCTCGTTCCAAGTGATG-----------TACTAC-
--------------------------------------------------------------------------------
-------------------------------------------------TAC----------------------------
----------------------------------------------------------------GTGCTAGCTATACGTA
CAAGCTAGTCA-GTCATGGTTTTTCTTTTCTTTTTTTGGAGGCCAAGCTAATCTGTCATGTGAATACTGCATAACTGTCA
AAAA---AA-TGTGCATAGTCATGTACCTTTTGTAAGCAACGTCTCCTGTAGCCTCTGGATTTTTCCTCTCTGTTTCAGG
TTGTGTGTGTAGTTCCTTTTCATTTTTTTAGTTGGACAACTGTTCTGTTTCTTGTCATGTGACAATTGGTTTTCTTACAA
AAGGAAATAGAATTATTCCCCACAAAAAGAAACATAATTTCTTGTCTGGCAGGTTTAAAAGGTTTTCACAGTTCTTAAAA
AAAATCAATGTAGGTTCTAAAAAGTGTTCATGTATTTAAGAATCATTCATATAATTTTAGAAGTGCCCACGTCTTTAAAA
TATATTTTTGTAGTTTTAGAAAAGTGTTCATACATTAAAAATGATTTTTATACTTTTCAATAAATTATGTATACTTCCTT
CAAACAAAAATAAGTGGA-AAAATGGTAAACATCCAAAAAAATAACATAGATATGAAA-AAGAAAAGAAAAACACAACAA
GAAAGAAGGAATGAAAAATAAACAGAAAAGAAAATTGAGTGTATTTGTTGAGAAACATTTATATATTATATAAAA----A
GGCTTTCTTCAAAAAATAGAAAAAGGAGACAAGAAAATG-TTTATATAT-------------------------------
----------------------------------TTTATGAAAAGGCTTTATTGAAAATGACAAA-AGA--AGAAAAGGG
GGAAAGAAAATACATTGGTACCATAAGAAAATAATACATGAATTGTTGATCGTCACAAACCAATCTGTGGTTTGATAGTT
AGGAGAACAGTGGTATCCCCGCCCATCAGTGTTCAAGTCTTAAACTTAACACAATAGCGACTTCGTCAATCTCAAGATGA
TGTGCCGGCTCAGTCTCTCAAAAATGCTCACAAAGGTAGGGTGTGCATGTGTGCATTCTAGGGGTGAGTGTACATGTGTA
C-------------------------------------------------------------------------------
----------------------------------------------------------
>chr5D_1067
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
-----------------------------------------------------GTATAGCACTAGCACACAATATTCACG
GCGCCGCGGCAACCGAAC---------CACCAGCAGCAGCGCCACCGGAGGCTGCAGGTGCGGCGCGTGTTCGACCTCTT
CGACCACGATGGCGACGGCGTCATCACCGCCGCTGAGCTCTCGGGCGCGCTGGGGCGCCTGGGG------CTGGGCGCGC
AGGCGGACGGGCTCGTCGCCGCCTACGTCGCACCC---------GGCATGCCCGGCCTGCGGTTCGCGGACTTCGAGGCG
CTCCACGCCGAGCTCGCCGGCGGAGGCGAGGAGGGCGAGGAGGCGGAGACGAGGGAGGCCTTCGCCGTGTTCGACGAGAA
CGGCGACGGATACATCTCCGCGGCGGAGCTGCAGGCCGTCCTGGCGTGGATGGGGTTGCCGGAGGCGGCGTGCATGGCGC
GGGTGCGCGACATGATCGCCGCGCATGACCGGGACAGCGATGGCCGCGTCGACTTCCATGAATTCAAGGCCATGATGGCT
GGCGGTATGTAAATGTAATAGCATAGTTATAA---GAATCCGATTTCTCGTTTCAAGTCATG-----------TACTACT
ACTAGTCTACTAATATTCACTCCGTTCGAAAAAACTTGTCCCTTAAATAGATGTATTTAACACCAAATTAGTGCGAGATA
CATTCATTTGAGGAATAAGCTTAGGACAAGCATTTTCGGATGAAGGGAGTAC----------------------------
----------------------------------------------------------------GTGCTAGCTATACGTA
CAAGCTAGTTT-GTCATGTTTTTTCTTTTCCTTTTTTGGAGGCAAAGCTAATCTGTCATGTGCATACTGCATAACTGTCA
AAAAAAAAA-TGTGCATAGTCCTGTACCTTTTGTAATCAACGTCTCCTGTAGCCTCTGGATTTT-CCTCTCTGTTTCAGG
TTGTGTGC--AGTTCCTTTTGA-TTTTCTAGTTGGACAACTGTTCTGTTTCTTGTCATGTGACAATTGGTTTTCTTATGA
TATGAAATATAACTATTCCCCATAAAAAGAAACAGAATTTCTAGTCTGGCAGGTTTAAAAGGTTTTCACAGTTCTTGCAA
AAAATCAATGTAGGTTTTAAAAAGTGTTCATGTATTTAAGAATCATTCATATAATTTTACAAGTGCCCACGTCTTTAAAA
TTTTCTTTTGCAGTTTTAGAAAAATGTTCATACATTAAAAAATATTTTTGTACTTTTCAATAAATTATTTATACTTCCCT
CAAACAAAAATATGTGGG-AAAATGGTAAGAATCCAAAAAAATAACATAGAAATGAAA-AA-AAAAGAAAAACACAACAA
GAAAGAAGGAATGGAAAATAAACAGAAAAGAAAATTGAGTGTATTTGTTGAGAAAAAATTACATATTATATAAAA----A
GGCTTTCTTCG-AAAATAGAAAAGGGAGACAAGATTATA-TATATGCCCAAGCACCTAGGTGCCCCAGTTAATTTACCTA
TATATATATATATATATATATATATATATATATATATATATATAATATTATATGAAAATGGCAAAGAGAAGAGAAAAGGG
GGAAAGAAAATACATTGCTACCATAAGAAAATGGAACATTAATTGTTGATCGTCACGAACTAATCTGTGGTTGGATAGTT
AGAAGAACAGTGGTATCCCCGTCCATCAGAGTTCAAGTCTTAAACTTAACACCATAGCGACTTCGGCAATCTCAAGATGA
TGTGTCGGCTCAGTCTCTCAAAGATGTTCACAAAGATAGGGTGTGCATGTGTGCATTCTAGGGATGGGTGTATATGTGTA
--------------------------------------------------------------------------------
----------------------------------------------------------
>chr2A_1838
--------------------------------------------------------------------------------
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--------------------------------------------------------------------------------
----------------------TTTTTCTAGTTGGACATCTGTTCTGTTTCTTGTCATGTGACAATTGGTTTTCTTATAA
AATTAAATATAATTATTCCCCACAAAAAGAAACAGAATTTATTGTCTTGCAGGTTTAAAAGGTTTTCATAGTTCTTTCAA
AAAAT-AATTTAGGTTTAAAAAAGTGTTCATGTATTTAAGAATCATTCATATAATTTTACAAGTGCCCGCGTCTTTAAAA
TATATTTTTGTTGTCTTAGAAAAATGTTCATACAGTAAAAATGTTTTTTATAATTTTCAATAAATTATTTATACTTCCTT
GGAACAAAAATAAGTGCG-AAAATGTTAAACATCCACAAAAATAACATAGAAATGGGG-AA-AAATGAAAAACACAACAA
GAAAAAAGGAATGAAAAATAAACAGAAAAGAAAATTGAGTGTATTTGTTGAGAAACATTTATATATTATATAAAATTAAA
GGCTTTCTTTGAAAAATAGAAAAAGGAAACAAGAAAATG-TTTATATAT-------------------------------
----------------------------------TATATGAAAAGGATTTATTGAAAATGAAAAGGAGA--AGAAAAA-G
GGGAAGAAAATGCATTTGTACCATAAGAAAATGATACATTAATTGTTGATCGTCACGAACTAATATGTGGCTGGACAGTT
AGGAGAACAGTGGTATCCCTACCCATCAGGGTTTAAGTCTTAAACTTAACACCATAGCGACTTCGTCAATCTCAAGACGA
TGTGCTGGCTCAGTCTCTCAAAGATACTCAGAAAGATAGGGTGTGCATGTGTGCATTCTAGAGGTGAGTGTATATGTGTA
--------------------------------------------------------------------------------
----------------------------------------------------------
>SNPs
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSS-----------------------------------S---------------------------------
----S--S------------------------------S-----------------------------------------
------------------------S-----------------------------------------S-----------SS
---S-------S--S------SS--------SSS---------------SS-S-S------------------------S
---------S-SSSSSSSSSSS----------------------------------------------------------
--------------------------------------------------------------------------------
----------------------------S-----S-----S---------SSSS------S-------------------
------------------------------S-----------------------------------------S-------
-----------------------------------S------------S-----S-----------S-------------
-----------------SSSS--------S------------------S-------S-----------------------
--------------------SSS------------------------------------------S--------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
----------------S------------------------------------------S--------------------
--------------------------------------------------------------------------------
-------S-S----------------------------------------------------------------------
--------------------------------------------------------------SSSSSSSSSSS-------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
-----------S---------------------S----------------------------------------------
-----------------------S--------------------------------------------------------
------------------------------------------------------------------------SS------
--S------------------------------------------------------S----------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
-----------S-----SS---------------------------------------S---------------------
------------------------------S--------------------------S----------------------
------------------------------------S-SS--S-------------------------------------
--------------------------------------------------------------------------------
------------------------------------------------S--S----------------------------
----S----------------------------------------------------------------------S----
------S--S----------------------------------------------------S------S----------
-SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
>forward_50
------------------------------CGATCCAATGCCTACGAGCT------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
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--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
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--------------------------------------------------------------------------------
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--------------------------------------------------------------------------------
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--------------------------------------------------------------------------------
----------------------------------------------------------
>reverse_1097
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------GAGCAGTAGCACACAATGTCC---
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
----------------------------------------------------------
>forward_267
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
-------GCTCCCCTTGTGTCGAATCA-----------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
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--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
----------------------------------------------------------
>reverse_1954
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
---------------------------------GTTGGAGGCAAAGCTAATCTGT-------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
----------------------------------------------------------
>forward_611
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
-------------------------------TATGGAGCCCATTTGCAGCG-----------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
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--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
----------------------------------------------------------
>reverse_2887
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
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--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
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--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
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--------------------------------------------------------------------------------
------AGCCCAGTCTCTCAAAGATGC-----------------------------------------------------
--------------------------------------------------------------------------------
----------------------------------------------------------
