>input_sequence_69606
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------ATGGAGGGCTCTTCCACACATGTTGCTCTCTTGCTG---GCTCTCATGGTATGC
TGTTC---CATGGCATCCTCGGCGGCGGCAGC------CCGAGGTAACTAC------TCAATTGCTGTTTCCCTTTCG--
----CACACACTCTTTTTCACGAGAAACAAAAAGGAACTAATCTTCTATTCTTAAATAGCCACAACCCACTATCAATTTT
TCCTAGACATGCAAACCATGCCACATAAGCAAATCATGCATGCAAGTTATAAATTACATTGTTTTCGTATTACTCTATGT
AGAATTGCCGCCACGTCATCAATTCATGCATGTTAGTCATAAGTTAA-TTTTACGTTAGATTGTGTATTGACAGTATATG
TGCTAGGGCGATCAGAACTCACCTATGTAGTGCACCCTTCACATTTTTGTTAGAGACACATTATTTTAAATGCAATACAA
TTTTCCTCCTTTTATACCCTTTATCGCTTCCCATTAGTTCTAGATATTCCTGTAGCAACTTTATGCATTTCGTTTAAAAA
GGTTCCTCCGGCAACACATGGGGCATCATGTATCTAGTATGTTTAATTATTATGTCTGGCCCGATTATGTGCATGCAGCT
TTTGTGGACGGAAACCGTGAAGGAGAACGTCCTCCCGCGCCTTGGGCCTCTGGCAGGAGGTCAGCGGAGTGTCCAGGATG
TGGAAGCACTTCGTCGCTGCCGGTGACAGCCAGACTTGCGCCACACCGAAAGAACCTGCAGGTTGCTGCGAACGTCGACT
TCTATGCATGA---------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
-----------------------------------------------------------------------------
>chr3A_1_TraesCS3A01G011400
ATTTTCAGTTATTTTTTTTTCAAGGGTAAACATTTTCAAATACTACATCAA-TATTAAAAATGTTTATTAGGTATTAAAA
GTTCTTATCATGTATTAAATTTTATATCACATATTTTCTCTTAAAACATACAACATGGTATTTAAAAAATATTCAGCATG
TACTCAGAAAAGCTCATCGTGTATGTTTTTTCAAAACTGTTCATCAGTTATTTAAAAGTATTCATCCGTTTTAAAAAGTG
TTCTTTGTGTAT-------------------TTAAAAATCTTGAATTTGCTTTTTATAAATGTTCATCATGTATAAAAAT
AATGTTTATCTTGTACTTTTAAAAAATTCCCAACACGCATTCTTGAATAGCCATTGATAATGATTTAAAGACATGATGAC
CAGATTTCCAAATACAGATGAACATTTTTTATGTATGCGCTGAACATTCTCCGTGCCACATTCTTAAGCGCAGACATTGC
TGGACCAGCACATCTACCGTGCGGGGATTTTGAGCTTTTTATTTATTCCCACATTTTTTTATGGATTTTATTGATCCCCA
CTTGTGGACTTGGTAATTCCACGGTCTAAATTTCTCCAGGAGGCGGGTATGAGC--AGCTTGTTGAAATTCCACGGTCTC
ACTTGAATAGTGCTCATGG-------------CCGTTTGGTCAAAACTATATGCGTGCAT--TATACTAATACTATATGA
AGAAACAGTCAAC-ATCACAAGGACTTTTTCATCTAAGAAGATATCATAGATTTTCGTGAGAAATTAAAGGTCGAATGTG
GACAAATCCAATTGCAGCCAAAGGAAACTTGCTGGAAACACAACATCTTTGTT-ACTGCTGACA-------AAGGGAACT
TTGACTGTGTGAGCAAATATAGGTATATATA--AGCCTCTACGTACGCGAGCAGGTAGCAGGAAGAGATCATAGGTATCC
GAAACTTCGGTGCAGCACCAGCCATAGTCCAATTCTCCTGGT----GCTACCATTCCTTGCGAGAAACACTGAGAAG---
-----------CGCTGGGACGTGATCATGGAGGGCTCTTCCACACATGTTGCTCTCTTGCTG---GCTCTCATGGTATGC
TGTTC---CATGGCATCCTCGGCGGCGGCAGC------CCGAGGTAACTAC------TCAATTGCTGTTTCCCTTTCG--
----CACACACTCTTTTTCACGAGAAACAAAAAGGAACTAATCTTCTATTCTTAAATAGCCACAACCCACTATCAATTTT
TCCTAGACATGCAAACCATGCCACATAAGCAAATCATGCATGCAAGTTATAAATTACATTGTTTTCGTATTACTCTATGT
AGAATTGCCGCCACGTCATCAATTCATGCATGTTAGTCATAAGTTAA-TTTTACGTTAGATTGTGTATTGACAGTATATG
TGCTAGGGCGATCAGAACTCACCTATGTAGTGCACCCTTCACATTTTTGTTAGAGACACATTATTTTAAATGCAATACAA
TTTTCCTCCTTTTATACCCTTTATCGCTTCCCATTAGTTCTAGATATTCCTGTAGCAACTTTATGCATTTCGTTTAAAAA
GGTTCCTCCGGCAACACATGGGGCATCATGTATCTAGTATGTTTAATTATTATGTCTGGCCCGATTATGTGCATGCAGCT
TTTGTGGACGGAAACCGTGAAGGAGAACGTCCTCCCGCGCCTTGGGCCTCTGGCAGGAGGTCAGCGGAGTGTCCAGGATG
TGGAAGCACTTCGTCGCTGCCGGTGACAGCCAGACTTGCGCCACACCGAAAGAACCTGCAGGTTGCTGCGAACGTCGACT
TCTATGCATGAATCAAATGTGGAAGTTTTCGTTGTA--------------------------------------------
--------------------------------------TGCATACAAGTATCATGCACAGCCATATTGATGCTCTCGCTA
TTGTTGTCCTCTTTTGTATGCATATATTTAAATTTTA-ATATAGAAAATGCCATTGAATAATTGTTCTATGGTTCTTGGC
TTAAAAAAGTGGTGCTGCTATCATTGGCGTCGCCCAGAAGTGGCAAGCACGGTGCCTTCATGATCATTACTTGCACATTA
TGGCCAGCGTCAGCAACTGGATTGTCACCATCATCGCTGTTATTGTCACAACCTCCTTATTTCCCCACCTCTCCATCCTC
ATAATCCTCCTTCATTTCCTCGTCGTCACCATCAGCTTCTTTGAG-TCGTTGTAGAGTTACCTGCCATGGGAACCATCGG
CACAGGATGTTCCAAAGCAACTGACACAATGGCTAAATTGCTGTGCCATTTCATCATTG---------------------
CTAATAAAATAGGTCATGCTGCAAGGAAAATCCCCTATGAGATTTTCAACCTTGTTCCACAGTTGTGGGAAAGATGCAAA
AAGGAAAGGAAAAAAATAGCCTACATGAAAATACAAAAAAAAAGATAAAATAAAAATAAAAATGGATTATACCTTGACGT
AGTTATTGGGCTTCATGTTGACATCCATCAAAATCTTCTGTATTGCCAAAGAAGCTATAATTCAGGGCGAGCTCGGTAAC
CATCTGCCAAAAAATTCTGAACAATGTTTCTATTATAGTTTTAAAAAGCCAGTCCATGGTAATGTGACTTGCCATGTATA
TGTTAG-AAAAAAAGTTTCAATAAACATCATGCCAGTTGCTGAAGGACCCATCGGCCTTTGTGTCTGCCGCGACAACCTT
ACTGGCAAGCTCGTGTGTCCAAGTGACTACATCTAAGCATTCAAAGTGCACATTGATGTCAAGCCATTTGACATCCAAGA
TGTGGACATACATGTTCTACTTCATGAGTGCAAATACTTGTACTCCCCCGGTGTTTGCATCAGGGGATGCAAACATT
>chr3D_1
ATTTTCAGTTATTTGTTTTTCAAGAGTAAACATTTTCAAATACTACATCAAGTATTAAAAATGTTTATTAGGTATTAAAA
GTTCTTATCATGTATTAAATTTTATATCACATATTTTCTCTTAAAACATACAACATGGTATCTAAAAAATATTCAGCATG
TACTCAGAAATGCTCATCGTGCATGTTTTCTCAAAACTGTTCATCAGGTATTTAAAAGTATTCATCTGTTTTAAAAAGTG
TTCTTTGTGTATTTAAAAAGTGCATCTTGTATTAAAAATCTTTAATTTGTTTTTTATAAATGTTCATCATGTATAAAAAC
AATGTTTATCTTGTATTTTAAAAAA--TCCAATCACGCATTCTTAAATAGCCATTGATAATGGTTTAAAGACATGATGAC
CAGATTTCCAAATACAGATGAACATCTTTTATGTATGCGCTGAACATTCTCCATGCCACATTCTTAAGCACAGACATTGC
TGGACCAGCACATCTACCGTGCGGGGCTTTTGAGCTTTTTATTGATCCCCAC-TTTTTTTATGGATTTTATTGATCCCCA
CTTGTGGACTTGGTAATTCCACGGTCTAAATTTCTCCAGGAGGCGGGTATGAGC--AGCTTGTTGAAATTCCACGGTCTC
ACTTGAATAGTGCTCATGG-------------CCGTTTGGTCAAAACTATATGCGTGCAT--TATACTAATACTATATGA
AGAAACGGTCAAATATCACAAAGACTTTTTCTTCTAAGAAGATATCATAGACTTTCTTGAGAAATTAAAGATTGTATGTT
GATAAATCCCATTGCAGCCAAAGGAAACTTGCTGGAAACACA---TCTTTGTTGACTGCTGACAAA--------GGAACT
TTGACTGTGTGAGCAAATATAGGTATATATATAAGCTTCTACTTACGCGAGCAGCTAGCAGGAAGAGATCATAGGTATCC
GAAACTTCGGTGCAGCACCAGCCGTAGTCCAATTCTCCTGGT----GCTACCATTCCTTGTGAGAAACACTGAGAAG---
-----------CGCTGGGACGTGATCATGGAGCGCTCTTCCACCCATGTTGCGCTCTTGCTG---GCTCTCATCGTATGC
TGTTC---CATGGCATCCTCGGCCGCGGCAGC------CCGAGGTAACTAC------TGAATTGTTG------TTTCCCT
TTCATACACACTCTTTTCCACGAGAAACAAAAAGGAACTAATCTTCTATTCTTAAATAGCTACAACCCACTATCAATTTT
TCCTAGACATGCAAAACATGCCACATAAGCAAATCATGCATGCAAGTTATAAAGTACATTGTTTTCGTATTACTCTATGT
AGAATTGCTGTCACGTCATCAATTCATGCATGTTAGTCATAAGTTTACTTTTACGTTAGATTGTGTATTGACAGTATATG
TGCTAGGGCGACCAGAACATACCTATGTAGTGCACCCTTCACATTTTTGTTAGAGACACATTATTTTAAATGCAATTCAA
TTTTCCTCTTTTTATACCCTTTATCGCTTCCCATTAGTTCTAGATATTCCTGTAGCAACTTTATGCATTTCGTTTAAAAA
GGTTCCTTCGGCAACGCATGGGGCATCATGTATCTAGTATGTTTAATTATTATGTCTGGCCGGATTATGTGCATGCAGCT
TTTGTGGACGGAAACCGTGAAGGAGAACGTCCTCCCGCGCCTTGGGCCTCGGGCAGGAGGTCAGCGGAGTGTCCAGGATG
CGGAAGCACTTCATCGCTGCCGTTGACTGCCAGACTTGCGCCACACCGAAAGAACCTGCAGGTTGCTGCAAACGTCGACT
TCTACGCATGAATCACATGTGGAAGTTTTCGTTGTA--------------------------------------------
--------------------------------------TGCATACAAGTATCATGCACAGCCATGTTGATGCTCTCGCTA
TTGTTGTCCTCTTTTGTATGTACATATTTACATTTTA-ATATAGAAAATACCCTTGAATAATTGTTCTATGGTTCTTGGC
TTAAAAAAGTGGTGCTGCTATCATTGGCGTCGCCCAGAAGTGG-------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
-----------------------------------------------------------------------------
>chrUn_563
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
----------------------GGTCTACATTTGTCCGGGAGGCGAGCATGACTATAGTTTGCTGAAATTCCA--GTCTC
ACTTGAATAGTGGACATGATCGTAGTATAGGACCATTTGGTCAAAGCTATGCGTGCAATATATATATTAATACTTTATGA
AGAAGTGC----ATATCACAAAGGCTTTTTGGTATAAAATGATATCATAGACTTTCTTGAGAAATGAAAGATTGAATGTG
GACAAATCCCATTGCAGCCAAAGGAAACTTGCTGGAAACACACCATCTTTGTTGACTGCTGACAAAGGCCAAAGGGAACT
TTGACTGTGTGAGCAAATATAGGTATATATAT--GCTTCTACGTACGCGAGCAACTAGCAGGAAGAGATCATAGGTA-TC
AAAAAC--------------------------TTCTTCTGGTCCTAGCTACCATTCCTTGTGAGAAACACTGAGAAG---
-----------C--------------ATGGAGCGCTCTTCCACCCACGTTGCTCTCTTGCTGCTGGCTCTCCTTGTATGC
TGTTCCAGCATGGCATCCTCGGCGCTGGCGGC------CCGAGGTAACTAC------TGAATTGTTG------TTTCG--
----TACATACACTTTTCCACGAGAAACAAATAGGAACTAATATGTTTA-------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
------------------------------------------------ATTATGTCTGGCCGGCTTATGTGCATGCAGCT
TTTGTGGACGGGAACCGTGAGGGAGAACGTCCTCCCGCGCCTTGGCCCTCGGGCAAGAGGTCAGCAGAGTGTCCAGGATG
TGGAAGCACTTCGTCGCTGCCGGCGATGGCCGGACTTGCACCACACAGAAAGAACCTGCAGGTTGCTGCGAACGTCGACT
TTTACGCATGAATCACACGTGGAAGTTTTCATTGTA--------------------------------------------
--------------------------------------TGCATACAATTATCATGGACCCCCATGTTGACGGTCTCGCTA
TTGTTGTCCTCTTTTGTATGCACATATTTAAATATCATATATAGAAAATACCATAGAATAATTTTTCTATGGTTCTTGGT
TTAAAAAAGTGGTGCTGCTATCATTGGCGTCGCCCAGAAGTGGCAAGCCCGGTGCCTTCATGATCATTACTTGCATATTC
TGGTGAGCGTCAACAAC-GGATCCTCGAAATCATCGCTGTTATTGTCACCATATCCTTATTTCCCCACTTCTCCATCCTC
ATCATCCTCCTTCATTTCCTCGTCGTCACCATCAGCTTCTTTTGAATCGTTGTAGAGTTACCTACCATGGGAACCAGCGG
CGCAGGATGTTGCAACGTAGCTCACACAGTGGCTAAATTGCTGTGCCATTTCATCATTGTCGACTTGCGGCACCAGATTG
CTAAGCAAATAGGTCATGCTGCAAGGCAAATCCCCCACGAGATTTTCAACCTTGTTCCACAGTTGTGGGAAAGAAAAAAA
AAGGAAAGGAAAGC----------------ATAGAAAAGCAGATAAAAAATAAT----AAAATGGATTATACCTTGACGT
AGCAATTGGTCTTCATGTTGACATGCATGAAAATTTCCTTAAGTCTTCTATAATTGAGTAA-------------------
-----------------------------------------------------------------------CCATGTATA
TGTGAATAACAAAAGTTTCAATAAACATCATGCCAATTACTGAAGGACCCATCGGCCTTTGTGTCTGCCGCGACAACCTT
ATCGACGTGCTCGTTTGTCAAGTAAGTG------AAGCATTCAAGGTGCACACCGATGTCAAGCAAATTGACACCTAAGA
TGTCGACGTACATATCCTACTTCATGAATGCAAAATACTTGTA----------------------------------
>chr3B_563
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
----------------------GGTCTACATTTGTCCGGGAGGCGAGCATGACTATAGTTTGCTGAAATTCCA--GTCTC
ACTTGAATAGTGGACATGATCGTAGTATAGGACCATTTGGTCAAAGCTATGCGTGCAATATATATATTAATACTTTATGA
AGAAGTGC----ATATCACAAAGGCTTTTTGGTATAAAATGATATCATAGACTTTCTTGAGAAATGAAAGATTGAATGTG
GACAAATCCCATTGCAGCCAAAGGAAACTTGCTGGAAACACACCATCTTTGTTGACTGCTGACAAAGGCCAAAGGGAACT
TTGACTGTGTGAGCAAATATAGGTATATATAT--GCTTCTACGTACGCGAGCAACTAGCAGGAAGAGATCATAGGTA-TC
AAAAAC--------------------------TTCTTCTGGTCCTAGCTACCATTCCTTGTGAGAAACACTGAGAAG---
-----------C--------------ATGGAGCGCTCTTCCACCCACGTTGCTCTCTTGCTGCTGGCTCTCCTTGTATGC
TGTTCCAGCATGGCATCCTCGGCGCTGGCGGC------CCGAGGTAACTAC------TGAATTGTTG------TTTCG--
----TACATACACTTTTCCACGAGAAACAAATAGGAACTAATATGTTTA-------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
------------------------------------------------ATTATGTCTGGCCGGCTTATGTGCATGCAGCT
TTTGTGGACGGGAACCGTGAGGGAGAACGTCCTCCCGCGCCTTGGCCCTCGGGCAAGAGGTCAGCAGAGTGTCCAGGATG
TGGAAGCACTTCGTCGCTGCCGGCGATGGCCGGACTTGCACCACACAGAAAGAACCTGCAGGTTGCTGCGAACGTCGACT
TTTACGCATGAATCACACGTGGAAGTTTTCATTGTA--------------------------------------------
--------------------------------------TGCATACAATTATCATGGACCCCCATGTTGACGGTCTCGCTA
TTGTTGTCCTCTTTTGTATGCACATATTTAAATATCATATATAGAAAATACCATAGAATAATTTTTCTATGGTTCTTGGT
TTAAAAAAGTGGTGCTGCTATCATTGGCGTCGCCCAGAAGTGGCAAGCCCGGTGCCTTCATGATCATTACTTGCATATTC
TGGTGAGCGTCAACAAC-GGATCCTCGAAATCATCGCTGTTATTGTCACCATATCCTTATTTCCCCACTTCTCCATCCTC
ATCATCCTCCTTCATTTCCTCGTCGTCACCATCAGCTTCTTTTGAATCGTTGTAGAGTTACCTACCATGGGAACCAGCGG
CGCAGGATGTTGCAACGTAGCTCACACAGTGGCTAAATTGCTGTGCCATTTCATCATTGTCGACTTGCGGCACCAGATTG
CTAAGCAAATAGGTCATGCTGCAAGGCAAATCCCCCACGAGATTTTCAACCTTGTTCCACAGTTGTGGGAAAGAAAAAAA
AAGGAAAGGAAAGC----------------ATAGAAAAGCAGATAAAAAATAAT----AAAATGGATTATACCTTGACGT
AGCAATTGGTCTTCATGTTGACATGCATGAAAATTTCCTTAAGTCTTCTATAATTGAGTAA-------------------
-----------------------------------------------------------------------CCATGTATA
TGTGAATAACAAAAGTTTCAATAAACATCATGCCAATTACTGAAGGACCCATCGGCCTTTGTGTCTGCCGCGACAACCTT
ATCGACGTGCTCGTTTGTCAAGTAAGTG------AAGCATTCAAGGTGCACACCGATGTCAAGCAAATTGACACCTAAGA
TGTCGACGTACATATCCTACTTCATGAATGCAAAATACTTGTA----------------------------------
>chr3A_570
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
-----------------------------ATTTCTCTAGTAGGCCGGCACGATC--AGCTTGTTGAAATTCCACGGTCTC
ACTTGAATAGTGCACATGATCGTAGTACGGTCTAGGGATATTACAAACTGCGAGTGCATTA--ATACTAATACTATATGA
AGAAACAATCAATATCCACAAATACTTTTTGATATAAAAAGATATCATAGACTTTCTTGAGAAA-TGAAGGTTGAATGTG
GACAACC-------------------ACTTGCTCGAAACACAACATCTTTGTTGACTGCTGACA-------TAGGGAACT
TTGACTATGTGAGCAAATATAGGTATATATAT--GCTTCTACG-----------CTAGCAGGAAGAGATCATAGGTACTC
AAAAAC--------------------------TTCTCCTGGTCCTAGCTACCATTCCTTGTGCGAAACACTGAGAAGCGC
TGGGACGTGATC--------------ATGGAGCGCTCTTCCACCCACGTTGGTCTCTTGTTG---GCTCTCCTCGTATGC
TGTTC---CATGGCATCCTCGGCGCCGGCGGCGGCAGCCCGAGGTAACTAACTACATTGAATTGTTG------TTTCG--
----TGCATACTCTTTTCCACGAGAAACAAAAAGGAACTAATGTGTT---------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------TGGCTGGCTTATGTGCATGCAGCT
TTTGTGGACGGAAACCGTGAGGGAGAACGTCCTCCAGCGCCATGGGCCTTAGGCACGAGGTCAGCGGGGTGTCCAGGATG
TGCAAGCACTTCGTCGCTGCCGGCGACGGTCAGACTTGTGCCACACCGAAAGAACCTGCAGGTTGCTGCAAACGTCGGCT
TTTACGCACGAATCACATGTGGAAGTTTTCATTGTACTTCCTCTGTAAAGAAATATAAGATCGTTTAGATCATACTTTAG
TGATTCAAACCATTTTATATTTCTTTACAGAGGGAGTATGTATACAAGTATCATGCACACCCATGTTAACACTCTCGCTA
TCTTTGTCCTCTTTTCTATGCACATATTTGAATTTAATATAAA-AAAATACCGTAGAATAATTGTTCTATGGTTCTTGGC
TCAAAAAAGTGGTTCTGCTATCATTGGCATTGCCCAGAAGTGGCAAGCCCGGTGCCTTCATGATCATTACTTGCGTATTC
TGGCCAGCATCAACAACGGGATCCTCGCCATCATCGCTGTTATTGTCACCATATCCTTATTTCCCCACCTCTCCATCCTC
ATCCTCCTCCTTCATTTTCTCGTCGTCACCATCAGCTTCTTTTGAATCGTTTC-GAGTTACCTGCCATGGGAACCAGCGG
CGCAGGATGTTGCAACGTAGCTGACACAGTGACTAAATTGTTGTGCCATTTCATCATTGTCGACTGGCGTCACCAGATTG
CTAAGCAAATAGATCATGCTGCAAGGGAAATCCCCTACGAGATTTTCAACCATGTTCCACAGTAGTGGGAAAGAAAAAA-
--GGAAAGGAAAGA----------------ATAGAGAGGCAGATAAAAAATAAT----AAAATGGATTATACCTTGACGT
AGCAATTGGGCTTCATGTTGACATCCATGAAAAT----------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
-----------------------------------------------------------------------------
>SNPs
--------------S---------S-------------------------------------------------------
-------------------------------------------------------------S------------------
----------S----------S-------S-----------------S------------------S-------------
------------------------------------------S------S-----------------------------S
---------------S---S-----SS---S-S-----------S-----------------S-----------------
-------------------------S--------------------------S----------------S----------
--------------------------S----------------S--S-----S---------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
------------S--------S-----------------------------S----S---------------S-------
---------S----------------------------------------------------------------------
------------------------------------S-----------------S-------------------------
-----------------------S------------------------------------S-------------------
--------------------------------S----------S-----------------------------S------
----------------------------------------------------------S-----S--SSSSSS-------
----S------------S------------------------------------------S-------------------
---------------S-------------------------------------S--------------------------
--------S-S----------------------------------S----------------------------------
-----------S------SS--------------------------------------------------------S---
--------S-----------------------------------------------------------------------
-------S-------S---------------------------------------------S------------------
--------------------------------------------------S-----------------------------
---------------------------S----------------------------------------------------
----S----------S----------------------------------------------------------------
----------------------------------------------------------------S---------------
----------------------S--------------------------S------------------------------
------------------------------------------------S--------------------------S---S
------------S----S----SS--S----------------------S-SS---------------------------
--S---------------------------------------SSS-------------------------------S---
-S---------S---S-S-S--------S---------------------------------------------------
----SS--------------------S----------S------------------------------------SSS---
------------S-SSSSSSSSSSSSSSSS---S----SS-S-S-S-------SSSSS----------------------
--SS------------------------S-----S-S--SS-S-SSSSS-S--SSS-SS-SSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS---------
---S-S---S-------------------------S--S-----------------------------------------
-SS-S-SS------S----S-SSSSSSSSSSSSS----------S-------SS----------S-S------S-S----
---S---S-----S-S-----------S------SSSS-SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
>forward_470
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------CCGTGCCACATTCTTAAGCG----------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
-----------------------------------------------------------------------------
>reverse_2631
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
----------------------------------------------------------------------GCTCGGTAAC
CATCTGCCAA----------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
-----------------------------------------------------------------------------
