>input_sequence_69544
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------------------------------------------------ATGGCGGACGACACGCCCACGAAACCCAGCAA
GAAAGGTTCCTCCGAGCCCGCCGTCCACTACGACGGCGCCAAGGCCAAGGCAAAGTCCAAGGCCGTCGTCCACGCCGACG
CCGAGGACGGGCATGCCGGCGATGCGGCGACGGCGAGTCTTGCTCCTGCCAACCGGACCCGGCTGCTGCGGTGCGCGTGC
TGCGGCCTGGCCGCGCTCGCCGCGTTGGCCGCCGTGGTGATCCTCGTCCTGTCGCTCACCGTGCTGAGGGTCCGGGACCC
GGACCTGACCATGGACTCCGTCACGGTGGAGCGCTTCCACGTGGGGTTCGCCGCCGTGCCCGACGGCCGCCCGCCACTGC
GGATCAACGCGACGCTGGCCGCGTGGATCATGATCCGGAACCCCAACTACGCGTCCATGTGGTTCGGCGCCAGCACGACG
GAGATTTTCCTCGACGGCGTGCCGGGCCGCGTCGGCCTAGGTAGCGCGCCGCCCGGGGAGGCGTCGGCGCGGGGCGCCAG
CCGGGTCCGCGGCGGCATGGACGTGTTCGTCGACAGGGTCGCGCCGGCCGTGGTGGGGGAGGTGCTGTTCGGCCGCGGCG
AGGTGCGGCTCACGAGCCGCACGGCCATGGACGGCAGGGTCAGCGTGCTCGGCGGGATCTACGGGCGGCGCACGGTGCGC
GTTGCCATGCGGTGCCACGTCGTGCTGCATGTGTCCGCCGTGGTCGTCGTCGCCGGCTTTCCTTCATGCGTCGCGGAGTT
CGGTCGCTGA----------------------------------------------------------------------
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>chr1B_1_TraesCS1B01G455700
CAGGCTTTTTTTCATAAGCGGTTAAAACATTTTTAAGTGCGCATTGGATATTATTTGAATAAATGGTGGAAATATTTTTA
ACATGCATTTAATATCTTTCATAAACTTCATGAATAATTTTAAAAATGTGCAATCATTGAAGTGTCAAAACATTTTATTA
AATGTAACAAAGATTTTTTTAGTGGTAGGAAACATTTCTGTTGAATTATTTGAGCATTTGTTGCATTGTATAATATATTT
TTAATAATGTTATTAACATATATTTAAAATGTAGGAACATTTTTTAATGTGATGAACAATGTTTTTGAATGACATGAGCA
GTTTTTGCAACCTACTCGAACAAAATTTTCACAGTTTTTATTGTTTTAAATGTAATGAAAAAGCTTTAGAAACATTTTTC
CATATTTTAAATGTGAGGAACATATCTGTAATAATACAAAAATTTCTATAAATTCCGAGAACAAACATTTTTTGCACTTC
TTTAACTTTTCGT-AATGTGCAACCAGCGCTTTTAAAATTTGAAGTAAATTAATTTTTAAAATATATGTATTTAGAATAT
TTCTAAATATAAACAAATTTAGAATTTTAAAAGTAGAGTAGTGAAAAAGAACATATGAACGAATGAAGAATAATCGAATG
GAAAGATCACTAATGGGCCGGCTTACTACTGAGGCTGCTTGAAGGTGAGCTGTACGTCAGTCTGGCACGCAGGAACGTAC
T-------------------------------------------------------------------------------
-------------------------------------------------------------------------GTAGTGG
TCGTGTCCATGTCAACCCG---TCGTCGACTGCAGCCACGCGAGCGGTTAGCGGTGCCCACCGCTCTTCATTGACCGAAT
TCAAGCTCGCCATACGGAAATCAAATG--GCGTCCCGACTGCGACCTCCAACCACCAGATCAATTGCACCTGCAGCGCAC
CAGCGGCCTGCGACGGCTACCCGCCATAAATCCCCCAGCGCCCAACCGCCCCGCCGTTCCT--------GCTATTGCCAC
TTCGCCAGTGGCCCGGCGCCATGCCACGCCACACACGCCAC--AACCCATGGCGGACGACACGCCCACGAAACCCAGCAA
GAAAGGTTCCTCCGAGCCCGCCGTCCACTACGACGGCGCCAAGGCCAAGGCAAAGTCCAAGGCCGTCGTCCACGCCGACG
CCGAGGACGGGCATGCCGGCGATGCGGCGACGGCGAGTCTTGCTCCTGCCAACCGGACCCGGCTGCTGCGGTGCGCGTGC
TGCGGCCTGGCCGCGCTCGCCGCGTTGGCCGCCGTGGTGATCCTCGTCCTGTCGCTCACCGTGCTGAGGGTCCGGGACCC
GGACCTGACCATGGACTCCGTCACGGTGGAGCGCTTCCACGTGGGGTTCGCCGCCGTGCCCGACGGCCGCCCGCCACTGC
GGATCAACGCGACGCTGGCCGCGTGGATCATGATCCGGAACCCCAACTACGCGTCCATGTGGTTCGGCGCCAGCACGACG
GAGATTTTCCTCGACGGCGTGCCGGGCCGCGTCGGCCTAGGTAGCGCGCCGCCCGGGGAGGCGTCGGCGCGGGGCGCCAG
CCGGGTCCGCGGCGGCATGGACGTGTTCGTCGACAGGGTCGCGCCGGCCGTGGTGGGGGAGGTGCTGTTCGGCCGCGGCG
AGGTGCGGCTCACGAGCCGCACGGCCATGGACGGCAGGGTCAGCGTGCTCGGCGGGATCTACGGGCGGCGCACGGTGCGC
GTTGCCATGCGGTGCCACGTCGTGCTGCATGTGTCCGCCGTGGTCGTCGTCGCCGGCTTTCCTTCATGCGTCGCGGAGTT
CGGTCGCTGATGCAT-------------------------------------------------CTGTTTCTGTTCTGTC
GT-CAGTCTCTCTACCGTGCAAGACGAATCTCACACCATCTTTTTTCTTCTAATTTGTATGTTGAATGTTTATTCTAACT
TCGGCGGAGTAATTTATGATCAAAGTCGTATTATTTACCATCAACCCCTTTTGTACACACAACTGGATGTTTTCATGACC
TGGTTGATTTAGTTGCCGGAGAATTGGCAAGTCCAATCAAAGGATGGTAGGTCCGACTAGATAAGTATAACATTTCATTT
TTCTTTTAACTTCATGACACCATTATTACAATACAGTACAGAAGAACATTTATTTATATTTGTATTTCAAGTTTGTTAAG
TCACTTGATAATTAGCTAATTCTCCGTCAATTGAGATAGTATAACAATGGAAAACGCTAACACTCTGCCGGCTGATCAGG
CAGAGAGTTCCGCCACCCACGCAGCTGTTGGATCGTCCTTTATCCACGCGTCCACAAGCACGCTTGCACACGCTCTTGAT
TTCGCCTACCAACCACGTGCCCCTTACCTTATCTTGCAACAACAAACCACAATAGTGAACCCCTTACCTTATGTTGCAAC
ATCAAACCACAATAGCGAACGACGGCCGCAGCTTAGACAAGATTTTGCAATGTCACCTCTCTTAAAAAAAAATCTGCAAC
AAGATCTCGCATGCGAAAAAAACTCTACAATAAGAATTTTATTGCAAAAAATAAATCCCACAACATAACCTATGTTGCAA
AAGAAATCTGCAACAAAACCTCTGTTGAAAATGTTTATGCAAGAAGGTGTTTGTTGCAAAGTAGTGGAAAATGCTCAGCG
CTAGTCAAATCCAATGACTTGAAGGGGCGGATCTTTTAAAAATATCCGCCAGCCGACGCGTAGCAGTCCCCCTATAACAA
TTGATAATTAGCTAATTCTCAGTCAATTGAGACTGTAGAACAACTGATAATTCACTTCATGACAACATTATTACAATAGA
TGAACATTTATTTAGATTTG------------------------------------------------------------
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>chr1A_251
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----------TATTAACATATATTTGAAATGCATGAATATTTTG-AATGTGATGAATAATGTTTTTGAATGACATGAATA
CTTTTTATAACCCATTAGAAG-AAATTTTCACAATTTTAATTGTTTGAAATGTCATGAAGAAACTTTCTAATTATTTTTT
CATATTTTAAATGTCAGAAAAATATTTTTAATGATACAAAAATTTCTAAGATTTCTGAGAACAAACATTTTTTACACTGC
TTGAACTTTTTGTAAATGCGTAACGAGCGCTTTTAAAATTTGAAGTAAATTAAATTTTAATATATATGTATTTATAATAT
TTCGAAATATAAATGAATTTAAAATTTTAAAAGTAGAGTAGTAAAAAATACATCTGAAT-GAAAGAAGAAAAATCTAATG
GAAAGATCAGTTATGGGCCG----------------------------------CGTCCGTCTGGGCGCGTCAGTGTAAG
GGAGCGCAAAGCAGCTTGGTCCAAAATTTGAAGTTTTGTTTTTGAGGGGTGTCCAAAATTTGAAGTAAATGCGAGAAGCA
AGGCCGAGGATGAATTTTGTGCTCTCAGTTGGGCTGCCCCTCTCAGGGAGCGCAAAGCAGCTCAGTCATGAAGGTACTGG
TCGTGTCCATGTCAACCCG---TCG---ACTGCAGCGACGCGAGCGGTTAGCAGTGTCCACCGCAC-TCATTGACCGAAT
TCAAGCTCGCCATACGA-----AAATG--GCGTCCCGAGTGCGACCTCCAACCACCAGATCAATT-----------GCAC
CAGCCGCCTGCGACGGCTACCCGCCATAAATCCCCCAGCGCCCAACCGCCCCGCCGTTCGAGCCCGGCGGCTATTCCCAC
TTCGCCAGTGGCCCGGTGCCATGCCACGCCACACACGACACACAACTCATGGCGGACGCCACGCCCACGAAACCCAGCAA
GAAAGGTTCCTCCGAGCCCGCCGTCCTCTATGACGGCGCCAAGGCCAAGACTAAGTCCAAGGCCGTCGTCCACGCCGACA
CCGAGGACGGGCATGCCGGCGATGCGGCGA------GTCCTGCTCCTGCCCACCGGACCCGGCTTCTGCGGTGCGCGTGC
TGCGGCCTGGCCGCGCTCGCCGCGTTGGCCGCCGTGGTGATCCTCGTCCTGTCGCTCACCGTGCTGCGGGTCCGGGACCC
TGACCTGACCATGGACTCCGTCACCGTGGAGCGCTTCCACGTGGGGTTCGCGGCGGTTCCCGACGGCCGCCCGCCGCTGC
GGATCAACGCGACGCTGGCCGCTTGGATCATGATCCGGAATCCAAACTACGCGTCCATGCGCTTCGGAGCTAGCACGACG
GAGATCTTCCTGGACGGCGTGCCGGACCGCGTGGGCCTCGGGAGCGCGCCGCCAGGGGAGTCGTCGGCACGGAGTACCAG
CCGAGTGCGCGGCAGCATGGACGTGTTCGTCGACAGGGTCGCCCCAGCCGTGGTCGGGGAGGTGCTGTTCGGCCGCGGCG
AGGTGTGGCTCACCAGCCGCACGGCCATGGACGGCAAGGTGAGCGTGCTCGGCGGGCTCTACGGGCGGCGCACGGTGCGC
GTTGCCATGCGGTGCCGCGTCGTGCTGCACGTGTCCGCGGTCGTCGTCGTCGCTGGCTCCCCTTCATGTGTGGCGGAGTT
CGGCCGCTGA----------------------------------------------------------------------
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>chr1D_725
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-----------------------------------------------------------------------------TGG
TCGTGTCCATGTCAACCCGACGTCG---ACTGCAGCGACGCGAGCGGTTAGCGGTGTCCACCGCAC-TCATTGACCGAAT
TCAAGCTGGCCATACGA-----AAATGGGGCGTCCCGAGTGCGACCTCCAACCACCAGATCAATT-----------GCAC
CAGCCGCCTGCGACGGCTACCCGCCATAAATCCCCCAGCGTCCAACCGCCCCGCCGTTCGAGCCCGGCGGCTATTCCCAC
TTCGCCAGTGGCCCGGTGCCATGCCACGCCACACACGCCAC--TACCCATGGAGGTCGCCACACCCACGAAACCCAGCAA
GAAAGTTTCTTCCGAGCCCGCCGTCCTCTATGACGGCGCCAAGGTCAAGGCCAAGTCCAAGGCCGTCGTCCACACCGACG
CCGAGGACGGGCATGCCGGCGATGCGGCGA------GTCCTGCTCCTGCCCACCGGACCCGGCTTCTGCGGTGCGCGTGC
TGCGGTCTGGCCGCGCTCGCCGCGTTGGCCGCCGTCGTGATCCTGGTCCTGTCGCTCACCGTGCTGAGGGTTCGGGACCC
CGACCTGACCATGGACTCCGTCACCGTGGATCGCTTCCACGTGGGGTTCGCCGCCGTGCCCGACGGCCGCCCGCCGCTGC
GGATCAACGCCACGCTGGCCGCGTGGATCATGATCCGGAACCCCAACTACGCGTCCATGTGGTTCGGCGCCAGCACGACG
GAGATTTTCCTCGACGGCGTGCCGGGCCGCGTGGGCCTCGGGAGCGCGCCGCCCGGGGAGGCGTCGGCGCGGGGCGCCAG
CCGGGTCCGCGGCGGCATGGACGTGTTCGTCGACAGGGTCGCACCGGCCGTGGTGGGGGAGGTGCTGTTCGGCCGCGGCG
AGGTGCGGCTCACGAGCCGCACGGCCATGGACGGCAGGGTCAGCGTGCTTGGCGGGATCTACGGACGGCGCACGGTGCGC
GTTGCCATGCGGTGCCATGTCGTGCTGCATGTGTCCGCCGTGGTCGTCGTCGCCGGCTCTCCTTCATGCGTCGCGGAGTT
CGGTCGCTGATGTAGTCCAGATGCGTGGGGATGCGATAATGTGCCGTTGCGCTGCTCGTACTAGCGGTTTCTCTTCTGTC
GTTCAATCTCTATACCGCGCGAGACGAATCTGACACCATCTTTTTTCTTCTAATTTGTATGTTGAACGTTTATTCTAACT
TCGGCGGAGTAATATATGATCAAAGTCGTATTATTTTCCATCAACCCCTTTCGTACACACAATTGGATGTTTTCATGACC
TGGTTGATTTAGTTGCCGGAGAATTGGCAAGTCCAATC-AAGGATGGTAGGTCCTACTAGATAAGTATAATATTTCATTT
TTCTTTTCACTTCATGACACCATTATTACAATAT-----AGATGAACATTTATTTACATTTGTATTTCAAGTTTGTTAAG
TCACTTGATACTTAGCTAATTCTTCGTCAATTGAGATAGTATAACAATGGGAAACGCTAACACTCTGCCGGCTGATCACG
CGAAGAGTTCCACCACCCATGCATCCGTTGGATCGTCCTTTATCCACGCGTCCACAAGCACGCTTGCACACGCTCTTGAT
TTCGCCTACCAACCACGTGCCCCTTACCTTATCTTGCAACAG--------------------------------------
--CAAACCACAATAGCGAACGACAGCGGCAGCTTAGACAAGATTTTGCAACATCACCTCCCTTAAAAAAAA--CTGCAAC
AAGATCTCTGCTGCGAAAAAA--TCTGCAATAAGAACTTTGTTGCAAAAAAAT-ATCCCGCAACATAACCTATGTTGTAA
AAGAAATCTGCAACAGAACCTCTGTTGAAAATGTTTCTGCAACAAGTTTC-TGTTGCAAAGTAGTGGAAAATGCTCAGCG
CTAGTCAAATCCAACGACTCGCGC-GGCGGATCTTTTAAAAATATCCGCCAGCCGACGCGTAGCAGTCCTCC-ATAACAA
TTGATAATTAGCTAATTCTCCGTCAATTGAGATAGTATAACAACTGATAATTCACTTCATGACAACATTATTACAATAGA
TGAACATTTATTTAGATTTGTACTAAAAATTTGTCAAGTGAGAAATCCAAGAGCATCTATCAAACACTATAGCATTAGGC
TCCGTCTCGCCTCCCTCCCGCGGCGCTCCCGCGAGTGCCTCGGGGGGAAACCCTAGCCGCCACCTCCCCCACCCCCCTCC
CACCTCCTCCCCCGCCGCCGTCGGCAGGCGTCACTGGGCGAAGCCCGTTGTGCGTTGGCGGCGGCGGGGCCTCTGCTCCC
CTCTCGCTCGTCGCCTGGAGGCTGGCGCGGGACGTCCTTGACGAGCGGAGGCGTCGTGCTTTCGTGGGGTACGGCGGTGC
AGTGACGTGTGCTTATGGCGGGGCGTGCGCGCGGGTTGGCGGACGGGCGGCCTGGGCTCGCGCTCGCAGCACGACGGCTG
CGCGCGGGCGGCTTCTGGTGGTGGCGTGCTCCGCCTAGATCGGGTCGGGCCCCTGGCTCTGGCGCTGGTCTTGGCGGGCG
GCGCGGGATGGAGGCGGCGGCTACGGTCGCTGTTCTGGGCGTGGTCCGTGGCGGCGCAGCGTCGCTCCTGCTGTGGTGTG
GCGGATTCTCGATGCGGAGCGAGTGGGGCGGCGGCTGGATCTGGTGTCTGCGCGTTTGCGGCTGGCTCATGGTGGTCCTC
CTAGTGCTCCTCTTCGGCTATGGACAGCGTTCGGTCCGGCGCTCCCCCGTCATGGGCGGGTGGCTGGTTCTGGCCATGTG
CGGATCTCGATCGGGAGCCATGGCGGGGCGCCACTGGGGGTGGCGTGGGGGAGGCCATTGGTTAGGCCATTGGGAGGGAG
GGGCGGCTCTGTCGCGGTGAGGCCACCCATCTCCGACGCGAGGATGCGCCGGTCGTGGACGAGGTCCGCTCCCTTTCCTC
CCCCTTTCTCTGGCCTGGTGTCTCCTGGTGCTGGATCTGCTCTGGTCAGGCTGGTCATTGGAGGCTCCATTGGTGGTTTG
GATTGTTGGTCGACGCTCGGCTCATGCCCACGGAGGTGCTTTAGGGGATCTGGATGCCGGGCGGCGGCCCGACTGGTGGG
AGTTGCGGTGCTCGTGGGCGGGGCTCGTAGCTCGGGTGTTGGTCGGCCGTCATGGTTGCGTGGGCGGCGTGGCGGCTGGT
GGTCGGTGTTCCGTGGCGGGGTGGAGCGTGTTACCGGGGTGAAAACCTTGTCTGATTTTGGTCAGACCGACGGCGGCGGC
GTCTTTGGGCGTCGTTCCCTTCTTGAAGGCCTTGTCGCGGTCACTCCGTGGTCTCCGCATATCTCCGGATGAAAATCTAG
ATCCTTTGGATCGGGCAGTGGTGGCGTTCTTGCGTCATGCCCTTCCTGAAGGCACCGCCTTGGAGTTCTCGGATCATCGG
CGCTCAACTTCGTCTCTTAGTGTGTTGCTTTGAGTGCTTCGGCCTCTCCTAGCGTTGCTTAATGTATATCTTGTGTGTGT
TGGGAGTTGTCCAGAGTGGTGTTGCTGAACCTTAACACCCTTGTATCTTGCCTTGGGTGCGTTGTGGTGTGGTGTCGTGT
TGCATGGCTCGAGTTGTTCGCTGCTTTAGAATATAAAGCGGGGGAAACCCTTTTTCGTAAATTTGCCAAGTCAATTGATA
ATTAGCTAATTCTTCGTCAATTGAGATAGTATAACAATTGATAATTAGCTAATTCTCCGTTGAATGAGA
>SNPs
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSS---------------S-----S-S---S-----SS-----------S--------------------SS-
S-----SS----S-S-S---SS-----------S----S-------S------S-----S--S----SS--SS------S
--------------S--S--S----S-S----S---------------SS-S---S-----------------S----S-
--S-------S-------S-S---S----------------------------S------S-------------S-----
---S---------SS------S--------------------S-----S-SSSSSSS-SS---S------S----S----
---------S-S--------SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS----S------SSSSSSSSSSSSS-S
S-------------------------------------------------------------------------------
----------------------------------------------------------------------------S---
-------------------------SSS--------S-------------------S-------S-S-------------
----------------SSSSSS----------------S--------------------------SSSSSSSSSSS----
----S------------------------------------------------------SS--------------S----
----------------S-----------------------------------------S---------------------
--------------------------S---S--------------------S----------------------------
------------------------------SSSSSS---S----------S-------------S---------------
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S-----------------------S--------------------------------------------------S----
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--------------------------------S-----S--S--------------------------------------
------------------------------------------S-------------------------------------
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----------------------------------------------------------S---------------------
------------S-S--------------------------------------------------S------S-------
-----S-----S-----S--S----------S----------------------------------S-------------
-------------S----------------------S--------------S----------S-----------------
--------------------------------------S---------------S---------------S---------
-------S-------------------------SSSSSS---S-------------S-----------------------
----------S------------S--------------------------S---------------------------S-
-SS--------S-------S---S-S------------------------------------------------------
-----------------------------------------SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SS---------------------S--S-----------------------SS-------S-----------SS-------
--------SSS----------SS---S---------S---S----------SSS-----S-----------------S--
---------------S--------------------S-----S---S-SSS-----------------------------
--------------S----S-SSSS--------------------------------------------S--S-------
--------------------S-----------SS---S------------------------------------------
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>forward_688
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----------------------------CTGAGGCTGCTTGAAGGTGA--------------------------------
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>reverse_2584
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-----------------------GGCCGCAGCTTAGACAAGAT-------------------------------------
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