>input_sequence_69535
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------------ATGGCGGATCACCAGAGGCAGAGGATCCACCCGGTGGACCTGGAGGCGGGCCAGCCGAGGCCCTCGGC
GCCGCTGGTGCCGCCGGGGAGCTCGTTCCGGTCCGACAAGGGCGACCCTGCCGCGGCCCCGGACAGGAGGCCGCCGCACC
ACCAGCCGCTGCCCCCG---------------------------------------CC----------------------
-----------------GAAGCGGCGCAGGGGCTGCTGCTGCCGCTTCATCTGCTGCGTCCTGGTGACCGTCATCCTGCT
CGCCGTCCTCGCCGCGGTGGCCCTGGGCGCGCTCTACCTGGTGTTCCAGCCCAAGGCGCCCCACTACTCGGTGGACCGGC
TGTCGGTGTCGCAGTTCCAGGTGGACCCGACCCTCACGGCGAGCGCGCGGTTCGACGTCACGGTGACGGCGGCGAACCCC
AACAGCCGCATCGGCATCTTCTACGAGCGCGGGTCCAGCCTGAGCGTGTGGTACGACACCCACCGGCTCGCCCAGGGCGC
GCTCCCGGCCTTCTACCAGGGCCGCCGCAACACGACGGTGCTGGGCGTGGTAATGGCCGGGCAGGCGCAGCTGGGCAGCG
CGGTGGTGGCGGCGCTGCGCGACGAGCAGCAGACGGGCGCCGTGCCGCTGGTGTTCCGCGCCGACGTGCCCGTGCGGGTG
GAGCTCGGCAGCCTCAAGCTGTGGACGGTCACGTCCAGGGTGCGCTGCGACCTCGTCGTCGACAGCCTCCTCAACGCCAG
CAGCCAGATCAAGATCAAGGCCAGCAACTGCAAGTTCAGCTTGAAGCTGTGA----------------------------
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>chr1A_1_TraesCS1A01G167100
CGATCTAATCGAGGAAATCAAAAGAATCTCTTCGGCCTTCTCCAGCTTGGAGTGTTCTATAGTACGGAGCAGAAACAGGT
TGGCACATGAGTGTGCAGCGGTGGCGCGGCGCACCGGCGATTACATGACGATTGCTGGAGCCCCTGAGTGCACCAGGCAG
ATTGTGTGTGATGAATGTAATACCACCATGGCATAAGTTTTGATGACCATGGTTCTCAAAAAAAAAAATGTAAGTCCGCG
TTGGATGGTTTGCGGGGACTGAACTATACAGTGCGAATGGATGCGGGGGTCTGATGATCCGCGCTGGAGAGTGGAGATGC
AATCATAAGATGGCGTGTGCGTCCGAATCTACTAGGGCCACGCGCTCCCGACATCAATCCCCTCGTGACGACGGCCCGTT
TCCGCGAGTTGTTCGTGCGCCCCATGTGCATCCCCGACACTCCTCACTCCAAGAGAAAGGAAAACGCGGGCAGCCGCTTG
CTTTCGCTCCCTCCCTTCCACGCGCCATCGCACCAACCATTGCACAAGCGCCCACGCT----------------------
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--------------------------CTGCCGCGCGGCGCCGCTCACCGAACCCGTGCGGAAAGCCGCGGGCAGCCCCGG
CGCACACACAATCGACGCGCAATGGCCGTGTGCCGTTGGGGCAGGTGGAGACTTCACGCCCCCGCGACACGCCGC--AC-
-CGACACGCACGCAGCCACACATACGTCGCTCTCCTGCTCCGCTCTCCCTTCGCGTCCAAGCCTCCCTCCCATCCCGGCT
GCACCGCAAGTCAACCGCCTTTCCACCTCCACCGCCCCCTCGCCGTCGTCTCTTTCCTGGCGCAACGCCAGTATATAGAG
CCGCACAGGCATTCCTTTGCTGCCACGACAAAGAGGAGGCAGAGGTTCGCAAGGTTGAAACTGCAATCCCGGCGACGGCA
AAGGCTTCTCTTTAGTTAGCTAGCGTAGCAGACTTCTATTCATATACTGTTCTTGCGTGCTCTGCACTTCTTGGCTAGCT
AGCTGGTCGGCCATGGCGGATCACCAGAGGCAGAGGATCCACCCGGTGGACCTGGAGGCGGGCCAGCCGAGGCCCTCGGC
GCCGCTGGTGCCGCCGGGGAGCTCGTTCCGGTCCGACAAGGGCGACCCTGCCGCGGCCCCGGACAGGAGGCCGCCGCACC
ACCAGCCGCTGCCCCCG---------------------------------------CC----------------------
-----------------GAAGCGGCGCAGGGGCTGCTGCTGCCGCTTCATCTGCTGCGTCCTGGTGACCGTCATCCTGCT
CGCCGTCCTCGCCGCGGTGGCCCTGGGCGCGCTCTACCTGGTGTTCCAGCCCAAGGCGCCCCACTACTCGGTGGACCGGC
TGTCGGTGTCGCAGTTCCAGGTGGACCCGACCCTCACGGCGAGCGCGCGGTTCGACGTCACGGTGACGGCGGCGAACCCC
AACAGCCGCATCGGCATCTTCTACGAGCGCGGGTCCAGCCTGAGCGTGTGGTACGACACCCACCGGCTCGCCCAGGGCGC
GCTCCCGGCCTTCTACCAGGGCCGCCGCAACACGACGGTGCTGGGCGTGGTAATGGCCGGGCAGGCGCAGCTGGGCAGCG
CGGTGGTGGCGGCGCTGCGCGACGAGCAGCAGACGGGCGCCGTGCCGCTGGTGTTCCGCGCCGACGTGCCCGTGCGGGTG
GAGCTCGGCAGCCTCAAGCTGTGGACGGTCACGTCCAGGGTGCGCTGCGACCTCGTCGTCGACAGCCTCCTCAACGCCAG
CAGCCAGATCAAGATCAAGGCCAGCAACTGCAAGTTCAGCTTGAAGCTGTGATCGGCCCTTGTCTTTCTT--TTCGTTCA
TGGTGTAGTGTAATTCTTTGGGTGGTTCGTTCTGGGGATAGGTCGATCGAGTTCTTCGCCCTGTGGGCGCGCTGGATTCT
TTTGGCAGCAGAGAGCCGTGCCGTGTTTGCATCGGTGCACTCCCGCCCCCTAGCATATCTTTTCTAGTAGCTCCGTGCAT
GTACATCTTGTGTAG---AGTTGATATTACCTTGCTGTTAGAGAGGAGTAATAATATGCATTCCTAGATTTTTCATGAAA
GTCTTATTCTGATCCCGAGCTCAAATGCAACCTGATGAACAATAAAATCATTGTTGAGGAAATCGTTAACTGGTAGCTGC
TCGGTTGGCTGGTGAGTAGGGGATTAATCGACTAATCGGCAAGTTAATCGGCCATTTAATCAATTAATCGAATGATTTTT
GAGTTTATCGGCTACTCGGTGACCCTACGAGTAGGGATTAATCGGCAAGTTAACTGGTTAATCGGATGAATTCTTGAACA
GGGAATAAAATATTAAAAAAAAGATTC------AACAAATTCTAAAAATTTTTGTGCGAAGAACATTGACAAAAAAATTC
TATGCTGAACAAATTTTAGCACGAAACGGCATTCGTGGAAGTCATGGTAAAAAAAAATCAAAACCAGCACTCTAAAATGT
TTTCAAACTAGAATTTTTGGAGCGTCGATTTTGCCT-TTTTTCACGACTTTCAC--------------------------
---------GAATGTTATTTTGTGCTAAAATTTTGCAAGCATACAAAGCTTTTGTCAAAATTACCAGAAAAGGTCAGAAT
-TTTTTGAAGTTTTCTAATACTTT-TTGATTTTACTGTTTATTAGGAGCATTTGAGTTCAGGAGGAA-------------
--CAGATTTTCACTATTATTTTCATGCAAAAAAGAAGATTGATACGGCCAGTACTCCCAAGATTTGTA------------
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-----------------------------------GTATGTTTTGTTTGAGTAGTACTCCGGGTACATGGAATAGCATGC
ACTGCTCTAAATCGGGAACGTCTCCTCCCGCTTAACATACGCC
>chr1B_339
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------------------GCGTTCGAATCTACTAGGGCCACGCGCCTCCGACATGAATCCCCTCGTGACGACGGCCCGTT
TCCGCGAGTTCTTCGTGCGCCCCATGTGCATCCCCGACACTCGTCACTCCAAGAGAAAGGAAAACGCGGGCAGGCGCTTG
CTTTCG----CTCCCTTCCACGCGCCATCGCACCAACCGGG-----------CACGCT----------------------
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--------------------------CTGCCGCGCGGCGCCGCTCACCGAACCCGTGCGGAAAGCCGCGGGCAGCCCCGG
CGCACACACAATCGACGCGCAATGGCCGTGTGCCGTTGGGGCAGGTGGAGACTTCACGCCCCCGCGACACGCCGCACAC-
-CGACACGCACGCAGCCACACATACGT--------------GCTCTCCCTTCGCGTCCAAGCCTCCCTCCCATCCCCGCT
GCACCGCAAGTCAACCGCCTTTCCACCTCCCCCGCCCCCTCGCCGTCGTCTCCCTCCTGCCGGAACGCCAGTATATAGAG
CCGCACAGGCATTTCTTTGCTGCCACGACAAGGAGGAGACGGAGGCTCGGAAGGCTGAAACTGCAGTCTCGGCAAGGCCG
CCTCTCT--------TTAGCTAGCGTAGCAGACTTCTGTTCAG--ACTGTTCTTGCGTGCAGTGCACTTCTTGGCTAGCT
AGCTACTCGGCCATGGCGGATCACCAGAGGCAGAGGATCCACCCGGTGGACCTGGAGGCGGGCCAGCCGAGGCCGTCGGC
GCCGCTGGTGCCGCCGGGCAGCTCGTTCCGGTCCGACAAGGGCGACCCGGCCGCTGCCCCGGACAGGAGGCCGCCACACC
ACCAGCCGCTGCCGCCGCCGCCGCGCCGCGTGGCCGCACCTCTGCCGCTGCCGCCACC----------------------
-----------------GAAGCGGCGCAGGGGCTGCTGCTGCCGCTTCATCTGCTGCGTCGTGGTGACCGTCCTCCTGCT
CGCCGTCCTCGCCGCGGCGGCCCTGGGCGCGCTCTACCTGGTGTTCCAGCCCAAGGCGCCCCGCTACTCGGTGGACCGGC
TATCCGTGTCGCAGTTCCAGGTGGACCCGACCCTCACGGCGAGCGCGCGGTTCGACGTCACGGTGACGGCGGCCAACCCC
AACAGCCGCATCGGCATCTTCTACGAGCGCGGGTCCAGCCTGAGCGTGTGGTACGACACCCACAGGCTCGCCCAGGGCGC
GCTCCCGGCCTTCTACCAGGGCCGCCGCAACACGACGGTGCTGGGCGTGGTGATGGCCGGGCAGGCGCAGCTGGGCAGCG
CGGTGGTGGCGGCGCTGCGCGACGAGCAGCAGACGGGCGCCGTGCCGCTGGTGTTCCGCGCCGACGTGCCCGTGCGGGTG
GAGCTCGGCAGCCTCAAGCTGTGGACGGTCACGTCCAGGGTGCGCTGCGACCTCGTCGTCGACAGCCTCCTCAACGCCAG
CAGCCAGATCAAGATCAAGGCCAGCAACTGCAAGTTCAGCTTGAAGCTGTGATCGGCCCTTGTCCTTCTTTGTTCTTTCA
TGGTGTAGTGTAATTCTTTGGGTGGTTCGTTCTGGGGGTCGATCGATCGAGTTCTTGGCCTTGTGGGCGTGCTGGATTCT
TTTGGCAGCAGAGAGCCGTGCCGTGTTTACATCGGTGCACTCCCACCCCCTAGCATATCTTTTCCAGTAGCTCCGTGCAT
GTACATCTTGTGTAG---AGTTGATATCACCTTGCTGTTACAGAGGAGTAATAATATGCATCCCTAGA-TTTTCATGGAA
GTCCTATTTTGATCCCGAGCTCAAATGCAACCTGATAAACATTAAAATATT-----------------------------
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>chr1D_339
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------------------GCGTCCGAATCTACTAGGGCCACGCGCTCCCGACATGAATCCCCTCGTGACGACGACCCGTT
TCCGCGAGTTGTTCGTGCGCCCCATGTGCATCCCCGACACTCCTCGCTCCAAGAGAAAGGAAAACGCGGGCAGCCGCTTG
CTTTCGCTCACTCCCTTCCACGCGCCATCGCACCAACCAT-GCACAGGCGCCCACGCTCTGCCGCGCGATTTTTTTTTGA
AACTATGATGTTTTTTTAGCAAATTCGAAAACTATACGCTCTAATGCATAAAAATCAAAATTATGACCCCGTCGGCCTTC
TGTTGGCCGAAGAGGGACTTTTCGGTCTACCGTTGGCCGAAGAGGAACTCTTCGGCCTACCGTTGGCCGAAGTGGGCCCA
GCCGGGTCGAAGAGCACTTTTCGGCTTCCCGTTGGCCGAAAAGTGTCAAGGGCACAAAACATAATTAAGATGGCATGAAA
TGAAAAAGTTATATGCATGAAAAATCTTCGTCTTGTCGAAACGGTTGATTTTGATATAAAAATCGTCTTAATCCGAAGTC
GTATGCAACCTATAGAGCCAAAACAAGGTCAGGGGCAGAAGCTGCAGAGTTACTTCGGACAGACCGAATGGATGTCAGAA
ATTTTGTCACGGGACACCCGGTGCACTCGATGAGACCGTGTGAAATATAGAAGAGTACACAAGTTTGGTCACGTTCACTC
TGTGAGATCGAACCAAACCACTCGGAGGCTCCGAATGGATCCGAAAAATTACTAAAGATTCCTGTCCGAGTTAAAGTTAG
GATTTTTGATCCGAAAAATTGTTCGTCTGCACCGGGAAGACTACTTGCGTACTGCGCTTCCGGCCGGGTCTCCTTCGACG
TGAGCTACGGTGCATCACCCCAGCGTCGAGGGTACATGGTGACGTTTTTGTGTGCATCACCCCCGACGTCGAGGGTGCAC
GGTGACGGGCCTGAGAGGTGACCATTGCCTCTACTTTGCATGGTGGATGACGCCACCGCCGAAAGTTTTCGACTCAATTC
CTGCCATCGCAACAGAGACATTTCTTCAATGCCGGCATGTGTCTTCCCGGTGCAGACGAACAATGCCCACATCGATTTAT
GAGGCGGCTGGACTTCCCGTACAATAAAAGGGCTAAAAATTCTATCCAAAAATCTTTGGCAATTTTTGGGAGCCTCCGAG
TGGTTTGGTTCGGTCTTACCGAGTTAACATGACCAAACTTGTGTACTCTTTTGTATTCCACACGGTCTCACCGAGTGCAC
CGGGTGTCCCGTGACAAATTTTCTGACATCCATTCGGTCTGTCTGAAGTAACTCTGCAGCGTCTGCCCCTTACCTTGTTT
TGGCTCTACAGGTTGCATACGACGTCGGATTAAAATGATTTTTATATCAAAATCAACCGTTTCGATGAGACGAAGATTTT
TCATGTTGATAACCTTTTCATTTGAGTCCATATTAATTACGTTTTGTGCCCCTGACACTTTTCGGCCAACGGGAAGCCGA
AAAGTGCTCTTCGGCCTAGCTGGGCCCACTTCGGCCAACGGTAGGCCGAAAAGTCCCTCTTCGGCCAACGGTAGGCCGAA
AAGTCACTCTGCGGCCAGCAGAAGGCCGACGGGGGCATAGTTTCGATTTTTATGCATAGTTTCCGAATTTGCTATAAAAA
TATCATAGTTTCAAAAAAAAAAAATCCTGCCGCGCGGCGCCGCTCACCGAACCCGTGCGGAAAGCCGCGGGCAGCCGCGG
CGCACACACAATCGACGCGCAATGGCCGTGTGCCGTTGGGGCAGGTGGAGACTTCACGCCCCCGCGACACGCCGC--ACA
TCGACACGCGCGCACCCACGCATAGGTCGCTCTCCTGCTCCGCTCTCCCTTCGCGTCCAAGCCTCCCTCCCATCCCCGCT
GCACCGCAAGTCAACCGCCTTTCCACCTCCTCCGCCCCCTCGCCGTCGCCTCCTTCCTGGCGCAACGCCAGTATATAGAG
CCGCACAGGCATTCCTTTGCTGCCACGACAAAGAGGAGGCAGAGGTTCGCAAGGTTGAAACTGCAATCCCGGCAACGGC-
AAGGCTTCTCTTTAGTTAGCTAGCGTAGCAGACTTCTGTTCATATACTGTTCTTGCGTGCACTGCACTTCTTGGCTAGCT
AGCTGGTCGGCCATGGCGGATCACCAGAGGCAGAGGATCCACCCGGTGGACCTGGAGGCGGGGCATCCTAGGCCGACGAC
GCCGCTGGTGCCGCCGGGGAGCTCGTTCCGGTCCGACAAGGGCGACCCGGCCGCGGCCGCGGACAGGAGGCCGCCGCACC
GCCAGCCGCTGCCGCCG---------------------------------------CCGCCGCGCCGCGTAGCCGCACCT
CTGCCACTGCCGCCGCCGAAGCGACGCAGGGGCTGCTGCTGCCGCTTCCTCTGCTGCGCCGTGGTGACCGTCCTCCTGCT
CGCCGTCCTCGCCGCGGCGGCCCTGGGCGCGCTCTACCTGGTGTTCCAGCCCAAGGCGCCGCGGTACTCGGTGGACCGGC
TGTCGGTGTCGCAGTTCCAGGTGGACCCGACCCTCACGGCGAGCGCGCGGTTCGACGTCACGGTGACGGCGGCCAACCCG
AACGGCCGCATCGGCATCTTCTACGAGCGCGGGTCCAGCCTGAGCGTGTGGTACCACACCCACCGGCTGGCCCAGGGCGC
GCTCCCGGCCTTCTACCAGGGCCGGCGCAACACGACGGTGCTGGGCGTGGTGATGGCCGGGCAGGCGCAGCTGGGCAGCG
CGGTGGTGGCGGCGCTGCGCGACGAGCAGCAGACGGGCGCCGTGCCGCTGGTGTTCCGCGCCGACGTGCCCGTGCGGGTG
GAGCTGGGCAGCCTCAAGCTGTGGACGGTCACGTCCAGGGTGCGCTGCGACCTCGTCGTCGACAGCCTCCTCAACGCCAG
CAGCCAGATCAAGATCAAGGGCAGCAACTGCAAGTTCAGCTTGAAGCTGTGATCGGCCCTTGTCC-------TTCTTTCA
TGGTGTAGTGTAATTCTTTGGGTGGTTCGTTCTGGGGATCGATCGATCGAGTTCTTCGCCTTGTGGGCGCGGTGGATTCT
TTTGGCAGCAGAGAGCCGTGCCGTGTTTGCATCGGTGCGCTCCCGCCCCCTAGCATGTCTTCTCCAGTAGCTCCGTGCAT
GTACATCTTGTGTAGTAGAGTTGATATTACCTTGCTGTTAGAGAGGAGTAATAATAAGCATCCCTAGATTTTTCATGAAA
GTCTTATTCTGATCCCGAGCTCAAATGCA---------------------------------------------------
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-------AAATATTAAAAAAAAGTAAAAAAAATAACAAATTCTG-AATTTTTTGTGTGGAGAACTTTGACAAAAAATTTC
-----------------AGCACGAAATGACATTCCTGGAAGTCACGGTAAAAAA---TCAAAACCAGCACTCCAAAATGT
TTTCAAACTAGAATTTTTGGACAGTCAATTTTGTTTCTTTTTCACGACTTTCAGAAGTTTGTGTTCGCATTTCATCAAAG
GAAAAGTGGGAATGTTATTTTGTGCTG-AATTTTGCAAGCATATGAAGCATTTGTCAAAATTATCAAGTAAAGTCAGAAA
CTTTTTGAAGTTTTCTAATATATTCTTGATTTTACTGTTTATCAGGAGCATTTGAGTTCAGGAGGAGCAGATACTCTACT
TCCAGATTTTCACCATTATTTTCATGTAAAAAGAAAGATTGACATAACAAGTACTACCAAGATTTGTACTCCCTCCGTCT
AGGTGTATAAGTCATCTTAGGTTATGCATGGCGACAAAGGCGGAGGGAAAAACGAGAGAACTTAATGTTTTTTTGCTAGT
TAATGTCATTGCATACAATAAATTAACCACTGCATGTCATGTTTGGTACTCATTGAGAGAATGCACGGCCCACATCTCTT
ATTGGTTGATATGTCACGAAACAAGAAACGAGAAGGGAGTTAATGTACCGTGCCTAAGTGTTTTGTGATTATTTGGTTTT
CGTAAGGTGACTTACACACCTAGACGAAAGGAGTAGTATGTTTTGTTTGAGTAGTACTCCGGGTACATGGAATAGCAGGC
ACTGCTCTACATCGGGAACGTCTCCTCCCGCTTAACAT-----
>SNPs
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSS------------------------------------S-------------------------
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---------S------------------------------S-----S---------------------------------
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----------------------------------------------------------------------------S---
------------------------------S---------------------S---------------------------
-------------------------------------------------------------------------S-----S
-------------------------------------S----------------------S-------------------
--------------------------------------------------------------------------S-----
------------------------------------------------S-------------------------------
-------------S------------------------------------------------------------------
------------------------------------------------------------S-----------S-------
-----------------S--------------------------------------------S-----------------
-------------------------------------------------------------------------S------
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---------------------------------------------------S----------------------------
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----------------------------------------------------------------S----------S----
---------------------------------------S-S------------------S-------------------
----------------------------------------------------------------S---------------
-------------------------------------------------------------S------------------
------------------------------------S----S------SS-SSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSS----------------SSSS----------------SS--S--------S-S-----S-----------S---
SSSSSSSSSSSSSSSSS---------S-S-----S---------S---------SSS---------------S-------
---------------------SS---S------SS------------------S--------------------------
--------------------------SS---------------SS----S-------------S--SSS--S-------S
--------------------SS--------------------S-----------------------S-------------
-------------S------------S-----SS--------S-SSS-S------S------------------------
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-----------------------------------------------------------------------------S--
---------S----------------------------SSSSS
>forward_266
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------GGTTTGCGGGGACTGAACTA------------------------------------------------------
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>reverse_3776
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---------------TCGGTGACCCTACGAGTAGG---------------------------------------------
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