>input_sequence_69513
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-------------------------------------------------------ATGG-------------AGCACCAG
ATGTTCAACGACCCGTTCACGAGCAGCATGTCGTCACTGGAGGCGGACATCTTCTCCGGT------GGACACCACCACCT
CGCGCCGTCCCTGCAGTTGCCGGGCCTAGACCTAGACC------ACGACATCCCGGCGGCGCCGGCTGCCAACAACGCCA
CCTCCTCCGG------------CGGCTCGAGGTCCCACCGAAAGATGAGCCACAGCGCGTACGAGCGCGACAGCCGCAAG
CAGCTCAACGAGCATTATTCCAACCTTCGCTCCCTCCTCCCCGACGATGATCATCACACCGTAATTAAATCGCTTAACTA
AACCCAACTCGTTAATCTTCTCTGGGCTACACACATGATATTTTCCTACGCTACACACATGTGCGAGATTCCGTACTGA-
--GCATCTGATCGATTTATCTTTCGCTGA---------TGTCGCAGAGGAAGCTGGGCAATCCGACCATTGTGTCGCGGG
TGATCAAGTACATCCCGGAGCTGCAGAAGGAGGTAGACGGCCTGGAGAAGAAGAAGGAGCAGCTGACGCGGGCCAGCTGC
AGGCCGGGAGATG---------------GCACGGCTCCTATCGTCTCCGCCACCTGCCTTGACGACAGGGAAATCATGGT
CCAGGTCAGCCTGCTGAACACCATGGCCGGTGCGCTGCCCATGTCCAAATGCATCAAGGTGCTGGAGAACCAAGGCCTCT
GCCTCATCAGCTCGTCCGCTTCGGCTTTTCAGAACAGGACCTTCTACAGCCTTCATCTTCAGGTACACACATGGATCTTC
TGA-----------------------------------------------------------------------------
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-------------------------------------------------------------------------------
>chr3B_1_TraesCS3B01G549700
TTCAAATTCAAATTGTGAAACATATGGTGAAACTCTATGAAACATATAGTGATACACTCTAGAACAC-------------
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---------------------------------------------------------------------------GTGAA
AACCTAGTAAAACCTGATAAGCAAAAATGTTTATTAAAAAACATAATA-TAAGTTTCATTATGTTCCACGAAAACAAACA
TATTGTTTCACTGTGCTTCATCGTGATCGACAACATATCATAATGTTTCATTACGTCCCAACATGCTTCAAACATAATAC
TACAAGTTTTTAGAAAAAACTCATTCTCCGCAAGTTTTCCTATGTTTTTTCGCGTACTAGAATGCATCACTATGTTTCAT
ATATAGTT-CAATCATATTTTGGAACTCAAATTTTTATACTTACCAAAATATATTTGGAAGTGATATTGTTTCAGTGTCT
TAGTTGCAAGGAACATAGCAAACATATCATAAATTGGATTTGTGGTTCAAAAGTTAAAATAGATTCAAAATTTAAAATCA
TACAAAAATCATGAACATGTGTTCTATTGCTTGGGAGTGTGAGAGAGAAAGGATGAGAGAGGTTGCAGGAATCCCGGTCA
CTGCATGGCATAAAGGTAACGTCGAGGATGTCACATAATGGACTAATAAACAATAAGATTCACAAGAATACAAGCATATA
GATATGATCGTGAAGTAAATGGATGGCTGAGCCATGCATGAGATATGGTGTGCACAACAGAATTGCTTTTCTCCCCT---
TTACCTCACTTTCATAATGTTCTCTGGAGTATGCCTTTTAGACATTCGGGCCAAATCAGTTCTCTGGACACTGCCAACCC
GCGTCTCTCGCCCTATATAAAATGGAGGTCGCCACTCCGGAACTTGCTCAACCTGATTGCATGGGTCAAACCAGCCATGA
GAAGTAGTTCATGCTGATCAATCTGGATAAAATTCAACCAGTGTAGATCAAGCAGGCTAGGTTCCCCCTCA--TCCACCA
TCATCTCTACAACCTCTCCACACGAACGAGACCAATCACAAGCTAGCTGCGAGCAATGG-------------AGCACCAG
ATGTTCAACGACCCGTTCACGAGCAGCATGTCGTCACTGGAGGCGGACATCTTCTCCGGT------GGACACCACCACCT
CGCGCCGTCCCTGCAGTTGCCGGGCCTAGACCTAGACC------ACGACATCCCGGCGGCGCCGGCTGCCAACAACGCCA
CCTCCTCCGG------------CGGCTCGAGGTCCCACCGAAAGATGAGCCACAGCGCGTACGAGCGCGACAGCCGCAAG
CAGCTCAACGAGCATTATTCCAACCTTCGCTCCCTCCTCCCCGACGATGATCATCACACCGTAATTAAATCGCTTAACTA
AACCCAACTCGTTAATCTTCTCTGGGCTACACACATGATATTTTCCTACGCTACACACATGTGCGAGATTCCGTACTGA-
--GCATCTGATCGATTTATCTTTCGCTGA---------TGTCGCAGAGGAAGCTGGGCAATCCGACCATTGTGTCGCGGG
TGATCAAGTACATCCCGGAGCTGCAGAAGGAGGTAGACGGCCTGGAGAAGAAGAAGGAGCAGCTGACGCGGGCCAGCTGC
AGGCCGGGAGATG---------------GCACGGCTCCTATCGTCTCCGCCACCTGCCTTGACGACAGGGAAATCATGGT
CCAGGTCAGCCTGCTGAACACCATGGCCGGTGCGCTGCCCATGTCCAAATGCATCAAGGTGCTGGAGAACCAAGGCCTCT
GCCTCATCAGCTCGTCCGCTTCGGCTTTTCAGAACAGGACCTTCTACAGCCTTCATCTTCAGGTACACACATGGATCTTC
TGACTTA------------------------------------------AATTCATGTTGCAGTCGT-GTCATCGATTCT
TACGATTTGATCTTAACCGTTGACGTTCCAGTATTATATAGTACTCCCTCTGTCCTATAATATAAGAAAGTTTTTGGCAC
TACACTAGTGTCAAAAACGTTCTTATA------------------------------------------TTATGGGACGG
AGGGAGTAATATACTTGATGAACTA---AACTCAATAAAGCACTTT-TTTCTGCAACGTTGACTGAGGTGGATTCAGCTA
AAGGGTACATACGAATTTCTGGACATTTTTTCAGGCCCTGCTATGGGTTATCAAATATCCACCATATAACTAATGCAATA
TTTATTCACTCTATCAAGGTAAACGACTTATCAACATTGTCAAATGAAAGTTCAATTAGTTTATTGTGCAT---------
----GCTTCCATCCCACCACACCACACGACATTCAATAAAAAAAA-----------------------------------
----------------------------------------------------GGTAACATAGCACGATGAAATGGTG---
AATGGTGCACTTTGCTTACCTTGACCGATAACATGTAACTAAGGTTCTGATGCAAGTCATCTGTATAATGTAGTCTAAGT
GTCAAACGGATCACGACAAGTTTCTCCTACTGCAAACGGTTTCTCGGTTATAGCATTGGAGTTGGAGGATAAGGGAGGTT
ACATGTGCCCTCTAGCCATATGTAACATGGATTCGGTGCAAGCAT-----------------------------------
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------------------------------------------------AGTCCCCGCCGCCGCCCCGAATGTGAACTTGG
GTCTAGGCCCATGCTGCGAACAGTGCAAGCATAGTCTTGTCGCAGAAGGTGGTTTTCGGTGTGGTGCTATCGAACAGTTT
GCAACGACATTGGTCCATGGAGATGCGGTCGAGGGGACGGTGCGGAGGGCCCGTGCTGGATGTGGCAGTATACTGGTCGA
GTTCACTAGCATCGTATCTGCCATTGGTGAAACATTGATCTTG-ACAATTTTAATGAGGCGGGCATGCCATTGCCAACAC
AGCCCACAACAGCCTGCTGCCGAAGAGACGAAGAAAGCGGCCGCCATGAACAATGGAGGAGGCGAGGAACAACGACATT
>chr3A_1
TTCAAAATCAAAATTTTAAACATATGGTGGAACTCTATGAAAC--ATAGTGATACACTCTAGAACACAAGAAAACCTAGT
AAACCCTAATAATCACAAATATTTAGTGAAAACATAGTATTAAGTTTTATTATGTTCCACAAAAACAAAGATATTGTTTC
ACTGTGCTTCATCGTGATCGACAACATATCATAATGTTTCATTGTGTCTCAACATGCTTAAAACATAATTAATACTACAA
ATTTTTAGTAAAAACTCATTCTCATCAAGCTTTCCTATGTTTTTCGCGTACTACAATGCATCACTATGTTTGATATAGTT
CCATTATGTTTTTGAACTCAAATTTTAAAACTTATCATAATATATTCGAAATTGATATTGTTCCAGTGTCCTAATTGCAA
GGAACATAGCAAACATATCATAAATTGGATTTGTGGTTCAAAAGTTAATAAGATTCAAAATTTAAAATCATATGAAAATC
ATGGATGGGTGTACTATTGCTTGGGAGTGTGAGGCATGGATTTAGGTTTTCCAGTTAAAAGGACCGATGTGTATTGAACA
TAAAGTTGGATTTACGGTCTCTTTGTTCATTTATGTTCAATGTAACTAGAGCTTTGAAAGAAGATCAATCTTGAATATAG
TTTGTTAATTTTCAAAATCGAATTTTGAAACATATGGTGGAACTCTATGAAACATAGTGATACACTCTAGAACGCGTGAA
AACCTAGTAAAACCTGATAAGCACAAATGTTTATTT-AAAACATAATATTAAGTTTTATTATGTTCCACAAAAACAAAGA
TATTGTTTCACTGTGCTTCATCGTGATCGACAACATATCATAATGTTTCATTACGTCTCAACATGCTTCAAACATAATAC
TACAATTTTTTAGTAAAAACTCATTCTCATCAAGCTTTCCTATGTTTTTTCGCGTACTACAATGCATCACTATGTTTGAT
ATG--GTT-CCATCATGTTTTCGAACTCAAATTTTAAAACTTATCATAATATATTCGAAAGTGATATTATTTCAGTGTCC
TAATTGCAAGGAACATAACAAACATATCATAAATTGGATTTGTGGTTCAGAGTTAATA--AGATTCAAAATTTAAAATCA
TACGAAAATCATGAATGGGTGTACTATTGCTTGGGAGTGAGAGGAT----GGATGAGAGAGGTTGCAGGAATCCCGGTCA
CTGCATGACAAAAAGGTAACGTCAA-GATGTCACATAATGTGCTAATAAACAATAAGATTCACAAGAATACAAGCATATA
GATATGATCGTGAAGTAAATGGATGGCTGAGCCATGCATGAGATATCGCGTGCACAATAGAATTGCTTTTCTCCCCTTTA
TTACCTCACTTTCATAATGTTCTCTGGAGTATGCCTTTTAGACATCCGGGCCAAATCAGTTCTCTGGACACTGCGAATCC
------CTCGCCCTATATAAAATGGAGGTCGCCACTCCGGAACTTGCTCAAGCTGACTTCGTGGATCAAACCGTACGTGA
AAATTTGTTCATGCTGATCAATCTGGTTAAAATTCAACTAGCGTAGATCAAGCAGGCTAGGTTCC--CTCA--TCCACCA
TCATCTCTACAACCTCTCCACACGAACGAGATCAAGCAGAAGCTAGCTGCGAGCAATGG-------------AGCACCAG
ATGTTCAACGACCCGTTCACGAGCAGCATGTCGTCACTGGAGGCGGAAATCTTCTCCGGT------GGCCACCACCACCC
AGCGCCGTCCCTGCAGTGGCCGGGCCTAG------ACC------ACGACATCCCGGCGGCACCGGCTGCCAACAACGCCA
CCTCATCCGG------------CGGCCCGGGTTCCCACCGGAAGATGAGCCACAGCGCGTACGAGCGCGACAGCCGCAAG
CAGCTCAACGAGCATTATTCCAACCTTCGCTCCCTCCTCCCTGACGATGATCATCACACTGTAATTAGATCTCTTAACTA
AACCTAACTTGTTCATCTTCTCTGCGCTACG-------------CCTACGCTACGCACATGTGCGAGATTCTGTACTGA-
--ACATCTGATTGATTTTGCTTTCGCTGA---------CGTGTCAGAGGAAGCTGAACAATCCGACCATTGTGTCGCGGG
TGATCAAGTACATCCCGGAGCTGCAGAAGGAGGTAGACGGCCTGGAGAAGAAGAAGGAACAGCTGACGCGTGCCAGCTGC
AGGCCGGGAGATG---------------ACACGGCTCCGATCGTCTCCGCCACCTGCCTCAACGACAGGGAAATCATGGT
CCAGGTCAGCCTGCTGAACACCATGGCTGGCGCTCTGCCCATGTCCAAATGCATCAACGTGCTGGAGAATCAAGGCCTCT
GCCTCGTCAGCTCGTCCGCTTCCGCTTTTCAGAACAGGACCTTCTATAGCCTTCATCTTCAGGTACACACATGGATCTG-
--------------------------------------------ACTTATATTCCTGTTGGTGTCGT-GTCATAGATGCT
TATGATTTGATCTTAACCATTGACGTTCCAGTATTATATAGTACTCCCTCCGTCCCAAAATAGGTGATTCAACTTTGTAC
TAACGTACTAAAGTTAGTACAAAGTTGAGTCACTAACGTGCTAAAGTTAGTACGAAGTTGAGTTACTTCTTTTGGGACGG
AGGGAGTAATATACTTGATGAACTA---AACTCAATAAAGCACTTTTTTTCTGAGACGTTGATTGAGGTGGATTTAGCTA
AAGGGTATATACGAATTTGTGGACATTTTTTCAGCCCCTACTCTGGGT-------TATCCACCATATAACTCATGCAATA
TTTATTCACCCTATCAAGGTAAATGACTTATCAATATTGTCAAATGAAAGTT-AATTAGTTTATTGTGCATTTAAATGAA
TTTGG-TTCGATCCCCGCACCCCACACGACCCTCAATAAAAAAAGGTAGCATATAGTACAATAAAAAGGTGAATGGTGCA
CTTTGCTTACCTTGAACGATCCCCGCACCCCACACGACCCTCAATAAAAAAGGGTAGCATAGTACAATAAAAATGTG---
AATGGTGCACTTTGCTTACCTTGAACGATAACACGTAATTAAGGTTCTGATGCAAGGCATCTGTATAATGTACTATAAGT
GTCAAGCAGATCACGACAAGTTTCTGCTACTGCAAAATGTTTCTCGGTTATAGTATTGGGGTTGGAGGATAAATAAGGTT
ACATGTGCCCTCTAGCCATATGTAGCATGTATTC----------------------------------------------
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-------------------------------------------------------------------------------
>chr3D_1
TTCAAAATCAAATTCTGAAACATATGGTGGAACTCTAAGAAAC--ATAGTGATACACTCTAGAACACAATTAAACCTAGT
AA------------------------------------------------------------------------------
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----------AACCTGATAAGCACACACGTTTATTA-AAAACATAATATTAAATTTTATTATGTTCCACAAAAACAAACA
TATTGTTTCACCATGCTTCATCGTGATCTACAACATATCATAATGTTTCATTACGTCTCGACATGCTGCAAACATAATAC
TACACATTTTTAGTAATAACGTATTATCATCAAGTTTTCCTATGTTTTTCCGCGTACTACAATGCATCACTATGTTTGAT
ATA--GTTCCCATCACGTTTTGGAACTCAAATTTTTAAACTTATGAAAATATATTCGAAAGTGATATTGTTTCAGTGTCC
TAGTTGCAAGGAACATATCAAGCATATCATAAATTGGATTTGTGGTTCAAAATTTAAAATAGA-----------------
-----------------GGTGTACTATTGCTTTGGAGTGTGAGAGAGAAAGGACGAGAGAGGTTGCAGGAATCCCGGTCA
CTGCATGACATAAAGGTAACGTTGACGATGTCACATAATGTGCTAATAAACAATAAGATTCACAAGAATACAAGCATATA
GATATGATCGTGAAGTAAATGGATGGCTGAGCCATGCATGAGATATCGTGTGCACAACAGAATTGCTTTTCTCCCCT---
TTACCTCACTTTCATAATGTTCGCTGGAGTATGCCTTTTAGACATCCAGGCCAAATCAGTTCTCTGGACACTGCCAACCC
GCGTCTCTCGCCCTATATAAA--GGAGGACGCCACTCCGGAACTTGCGCAACCTGATTGCATGGATCAAACCAGCCATGA
GAAGTAGTTCATGCTGATCAATCTGGATAAAATTCAACTACCGTAGATCAAGCAA-----GTTCCCTCTCA--TCCACCA
TCATCTCTAGAACCTCTCCGCAGGAACGAGACCAAGCAGAAGCTAGCTGCGAGCAATGG-------------AGCACCAG
ATGTTCAACGACCCGTTCACGAGCAGCATGTCGTCACTGGAGGCGGAAATCTTCTCCAGT------GGCCATCACCACCT
CGCGCCGTCCCCGCAGTGGCCGGGCCTAG------ACCTAGACCACGACATCCCGGCGGCGCCGGCTGCCAACAACGCCA
CCTCCTCCGG------------CGGCTCGAGGTCCCACCGAAAGATGAGCCACAGCGCGTACGAGCGCGACAGCCGCAAG
CAGCTCAACGAGCATTATTCCAACCTTCGCTCCCTCCTCCCCGACGATGATCATCACACTGTAATTAGATCTCTTAACTA
AACCCAACTCGTTCATCTTCTCTGAGCTA-------------------CGCTACGCACATGTGCGAGATTCTGTACTGA-
--GCATCTGATCGATTTTTCATTCGCTGA---------CGTCGCAGAGGAAGCTGGGCAATCCGACCATTGTGTCGCGGG
TGATCAAGTACATCCCGGAGCTGCAGAAGGAGGTAGACGGCCTGGAGAAGAAGAAGGAGCAGCTGACGCGAGCCAGCTGC
AGGCCGGGAGATG---------------ACACGGCTCCGATCGTCTCCGCCACCTGCCTCGACGACAGGGAAATCATGGT
CCAGGTCAGCCTGCTGAACACCATGGCCGGCGCGCTGCCCATGTCCAAATGCATCAAGGTGCTGGAGAACCAAGGCCTCT
GCCTCATCAGCTCGTCCGCTTCCGCTTTTCAGAACAGGACCTTCTATAGCCTTCATCTCCAGGTACACACATGGGTCTTC
TGACTTAAGTTCCTGTTTTTTTTTGTTTTTTTTTTTTGCGATGAACTTAAATTCCTGTTGGTGTCCT-GTCATCGATGCT
TATGATTTGATCTTAACTGTTGACGTTCCAGTATTATATATTAGTA----------------------------------
--------------------------------------------------------------------------------
----------ATACTTGATGAACTAATAAACTCAATAAAGCACTTTTTTCTCC-GACGTTGATTGAGGTGGATTTAGCTA
ATGGGTATATACGAATTTGTGGACATTTTTTCAGGCCCTACTCTGGGT-------TATACAC----TAACCCATGCAATA
TTTATTCACTCTATCAAGGTAAACGACTCATCAACATTGTCAAATGAAAGTT-AATTAGTTTATTGTGCATTTGAATGAA
TTTTGCTGCGATCCCACCACCCCACACGACCCTCAATAAAAAAAT-----------------------------------
----------------------------------------------------GGTAACATAGTACGATGAACGGTGAATT
AATGGTGCGTTTTGCTTACCTTGACCGATAACATGTAATTAAGGTTTTGATGCAAGGTATCTGTGTGAGCC---------
-TCAAACGGATCAGGACAAGTTTCTCCTACTGCGAAATGGTTCTCGGTTATAGCATTGGAGTTGGAGGATAAATGAGGTT
ACATGTGCCCTCTAGCCATATGTAGCATGGATTCCACGAAACCCTCATCATTCTAGCTAGGCTTTTCGGGTTCCATCTTC
TGGGCTTTGGAGGGTTCCGACAGCAATGTGTCAACACTCATTGTTGGTGATCAATTATCATGCAACCGTGTCAAAAATTA
TCATACATACTAAGAAGTAACACAATAGTTCTATGGATGTGTCAAAAAATTGTAATATTGACTAGATGTCTGCGACTATG
TCTTATGTTCCAACTTACATTTGTCGGAATGGTAACTTCACACAAAAATACTTACAATTCTATCATCTTTTTTGAAACAG
AAAACCCAACGAACAATGAGCAAGGAGTGCTCAACATTTTGTGACGAGCTGGAGAACGCCGTGAAGCAAAAGGCAGGACT
ACATCCACATTACTAGTAGAAGACAACATAATAATGGTGGATGCGATCATATTTAAGTACTACCAAGAATCAAAATGCAT
GCCATACCTATATAGCAAATAATCAAAGATAAATAGTACCGATGCATGCATGATAATATAAAACAGTGTGTTCCATATAT
ATAACTACTATTGTATTTACATTCAGGCCCTACATTTTCCTCTTGATGTACCCTAGCTTGTACGCAGATGCGGGTTGAGT
ATAATTAGTATGCATGATAGGACGGAGAAAATAAATTTAGAGCTGGCCGCAAAAGCAGTGGCGTGCATTCTGATAAGACA
CGCCATGTCCATGTAATTCATACAAATAAATAAATATATTATGGTACCACCATGTCGTGTAATGTTCATATATGATTTGG
AATTATGAGGATGATTAATTTGCCTCAACACATCGTATTTTTACATACATAAACAATTCAGACTCCTAGCATGCGCAAAT
AATCCATCACTTGGTTTCAGTGAGGACCATTGACAATACGGCTCCTCAGTAACTCTTCTTGTTTCGGACGACCATGAATG
TTACTATAATTAAATTTGATAATTACTGATAATTTAATTTGGTAATCATTTGTTGATGTGCTATATCATTTTGTGTCGTC
ATTGTGTTCTCATCTTGTGGTGTGGGTGTGCTCATGCGTTGGTGCATGTCTCCAAGATCTGCTCGTATCGCTTGTCTTAG
ATGCTAGCTTTTTTTTGAGAAACTTTAGATGCCAGTTGTAGTATCCTGCTGTATTCCTCCTTTGGCATTTTCGGAGGGGA
ACGATTGCTGAGGTGGTGCGCCGGGTGAGAAGGCCAGGTTCAGAGCACCCATGTATACGGCCTATAGGTGAACAGAGTTT
TTCACACATGAATTAGTAGTTCCATGCCCTAAAAAAACAAACATGCAGCAAAAGATGTCAAAAAAGTTCAGACCTTCCTT
TTCTTGTAATAAAATAAAAATCAGACGTTGCAGACGAAAAATGCATCATATTAACTGTACCATATACTCTGTANNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNCTGTATATTT
TGCATCCCAAATTAATTCTAAGTAACTTATGCTCTTGCAGCTCCACCTAAGCTTAATTATAACACGGCGTCCTTAGTTAA
TCTGAATTGACCTTCAAAGCTAGAACTGCACTATCTAGCACGCTGGGCCGGTAAAACTGCTACATCCCGCGCCCCTCTTG
TGGGGAAAGCCTATTTCGGCCGCCGCCGGCCCTCCTCTACGCACCCACAGTCCTCACCGCTGCCACGAATGAGAACTTGG
GTCTAGGCCCGTGCTGCGAACAGTGCAAGCAGAGTCTTGTCGTAGAAGGTTGTTTTCGGTGTGGTGCTATCGAACAGTTT
GCAACGACGTTGGTTCATGGAGATGTGGTCGAGGGGACGGTGGGGAGGGCGCGTGCTGGATGTGGCGGTATACTGATCCA
GTTCACTAGCATCGCATCTGCCATTGGTGGAACATTGTTCTTGAACAATTTCAATGAGGC----ATGCCATTGCTAGCAC
AGTTCACAGCAGCCTATTGTCGAAGAGGCTAAGAAAGCGGCCGCCATGAACAACGGAGGAGGCAAGGAACAACGAC---
>chr3B_924
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--------------------------------------------------------CTAGGTCCCCTCTCATCTCCACCA
TCATCTCTAACCTCTCA----------GAGATCAAGCAGAAGCCAGCTGCGACCTGCGAGCAATGGGGCACCAGCACCAG
ATGTTCAACGACCCCTTCGCGAGCAGCATGTCGTCACTGGAGGAAGACATGTTCTCCGGTGCCGGAGGCTACCACCACCT
CACGCCGTCCATGCAGTGGCCGGGCTTGGATA------------ACGACATACCGTCGGCGCCGGCTGCCAACAACGCCA
CCTCCTCCGG------------TGGCTCTGGATCACACCGCAAGATGAGTCACAACGCGTACGAACGTGACCGCCGCAAG
CAGCTCAACGAGCAATATTCCTCCCTCCGCTCCCTCCTCCCCGACGATG---ATCACACCGTAATTAAATCGCTTAACTA
AACCCAACTCAT------------------------------------------------GTGAGAGATTCTGTACTGA-
--TCATCTGATCGATTTATTTTTTGCTAC---------TGTCGCAGAAGAAGATGAGCATTCCGACCACGGTGTCGCGGG
TGATCAACTACATCCCGGAGCTGCAGAAGGAGGTAGACCGCCTGGAGAAGAAGAAGGAGGAGCTGAGGCGGGGCAGCTGC
GAGCAAGGCG------CCATGAGGCAGAACACGGCCCCGATCGTGTCCGCCACCTGCCTCGACGACAGGGAGATCATGGT
CCAGGTCAGCCTGGTGAGCACCATGGCGGGAGCTCTGCCCATGTCCAAGTGCATCAAGGTGCTGGAGAACCAAGGCCTTC
GCCTCATAAATTCCTCGACTTCCGCGTTTCAGAACAGGACGTTCTACAGCCTCCATCTTCAGGTACAC------------
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>chr3A_1005
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------------------------------------------------------------------------AGCACCAG
ATGTTCAACGACCCCTTCGCGAGCAGCATGTCGTCATTGGAGGAGGACATGTTCTCCGGTGCCGGCGGCTACCACCACCT
CACGCCGTCCATGCAGTGGCCGGGCTTGGATA------------ACGACATACCGTCGGCGCCGGCTGCCAACAACGCCA
CCTCCTCCGGCGGC------------TCCGGATCACAGCGCAAGATGAGTCACAACGCGTACGAGCGTGACCGCCGCAAG
CAGCTCAACGAGCAATATTCCTCCCTCCGCTCCCTCCTCCCCGATGACG---ATCACAATGTAATTAAATCGCTTAACTA
GACACAACTCGTTCATCTTTCCT----------------------CTGAGCTATGTACATGTGAGATATT-----CTAA-
--GCATCTGATCGATTTATCTTTTGCTAC---------TATCGCAGAAGAAGATGAGCATTCCGACCACGGTCTCGCGGG
TGATCAAGTACATCCCGGAGCTGCAGAAGGAGGTAGACGGCCTGGAGAAGAAGAAGGAGGAGCTGAGGCGGGCCAGCTGC
GAGCAAGGCG------CCATGAGGCAGAACACAGCCCCGATCGTGTCCGCCACCTGCCTCGACGACAGGGAGATCATGGT
CCAGGTCAGCCTGGTAAGCACAATGGCCGGAGCTCTGCCCATGTCCAAGTGCATCAAGGTGCTGGAGAGCCAAGGTCTTC
GCCTCATAAATTCGTCGACTTCCGCATTCCAGAACAGGACGTTCTATAGCCTCCATCTTCAGGTACACA------TCTG-
--------------------------------------------CCTTTCCGTCCTGTTGTTGTTGTGGTCATCGATGCT
TATGATTTGATCTTAAC---------------------------------------------------------------
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>chr3D_1005
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------------------------------------------------------------------------AGCACCAG
ATGTTCAACGACCCCTTCGCGAGCAGCATGTCGTCACTGGAGGAGGACATGTTCTCCGGTGCCGGCGGCTACCACCACCT
CACGCCTTCCATGCAGTGGCCGGGCTTGGATA------------ACGACATACCGTCAGCACCGGCTGCCAACAACGCCA
CCTCCTCCGGCGGC------------TCTGGATCACACCGAAAGATGAGTCACAACGCGTACGAGCGTGACCGCCGCAAG
CAGCTCAACGAGCAATATTCCTCCCTCCGCTCCCTCCTCCCCGATGACG---ACCACAATGTAATTAAACCGCTTAACTA
GACACAACTCGTTCATCTTTCCT----------------------CTGAGCTATGTACATGTGAGATATT-----CTGA-
--GCATCTGATCGATTTATCTTTTGCTAC---------TGTCGCAGAAGAAGATGAGCATTCCGACCACGGTGTCGCGGG
TGATCAAGTACATCCCGGAGCTGCAGAAGGAGGTAGACGGCCTGGAGAAGAAGAAGGAGGAGCTGAGGCGGGCCAGCTAC
GAGCAAGGCG------CCATGAGGCAGAACACGGCCCCGATCGTGTCCGCCACCTGCCTCGACGACAGGGAGATCATGGT
CCAGGTCAGCCAGGTGAGCACCATGGCCGGAGCTCTGCCCATGTCCAAGTGCATCAAGGTGCTGGAGAATCAAGGCCTCC
GCCTCATAAATTCCTCGACTTCCGCGTTCCAGAACAGGACGTTCTACAGCCTCCATCTTCAGGTACACA------TCTG-
--------------------------------------------CCTTTCCGTCCTGTTGTTGTTGTGGTCATCGATGCT
TATGATTTGATCTTAAC---------------------------------------------------------------
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>chr3B_1008
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---------------------------------------------------------------------------ACCAG
CTGTTCGAGGACCCGTTCGCGAGCAGCATGTCGTTGCTGGAGCCCGACATCTTCTCCGGCACCGGCGTCCACCACCACCT
CGCGCCGTCCATGCAGTGGCTGGGCCTCGGAA---ACC------ACGGCATCCCAGTAGCGCCGACCGTCAACAACGGCA
CCTCCTCGGGCGGCGACGGCGACGGCTCGGGCTCCCATCGCAAGATCAGCCACAACGCCTACGAGCGAGACCGACGCAAG
GAACTCAACGAGCTCTACTCCGACCTCCGCTCCCTCCTCCCCGAAGACG---ATCGCACCGTAATAACATCGTTTAATTA
AACCCGACTCATTCATCTTCCTCCGTGGCTCTCATATA----------------GTACATGGGAGAGGTTCTGTCATGAC
TAGCATCCAACCAATTTATCTTTTCCTTCAATTAACTGTGTTGCAGAAGAAGCTGAGCATTCCAATCACGGTTTCACGGG
TGCTCAAGTACATCCCAGAGCTGCAGAAGCAGGTGGAAGGCCTGGAGAAGAAAAAGGAGGAGCTGACGCGGGCCAGCTGC
AAGCCGGGAGTGCTGACCATGAGGGAGAACACGGCTCCGATTGTGTCCGCCACCTGCATCGACGACAGGGATATCATGGT
CCAGGTCGGCCTGGTGAGCACTATGGCTGGAGATCTGCCCTTGTCCAAGTGCATCAACGTGCTGGAGAATGAAGGTCTTC
GCCTCATCAGCTCGTCCACTTCCGCATTCCAGAACAGGACGTTCTACAGCCTTCATCTTCAGGTACACA-----------
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>chr3D_1008
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---------------------------------------------------------------------------ACCAG
CTCTTCGAGGACCCGTTCGCGAGCAGCATGTCGTCGCTGGAGCCGGACATCTTCTCCGGCGCCGGCGTCCACCACCACCT
CGCGCCGTCCCCGCAGTGGCTGGGCCTCGGAA---ACC------ACGGCATCCCAGTGGCGCCGACTGCCAACAACGGCA
CCTCCTCGGGCGGCGACGGCGACGGCTCGGGCTCCCACCGCAAGATCAGCCACAACGCCTACGAGCGCGACCGCCGCAAG
GAGCTCAACGAGCTCTACTCCGACCTCCGCTCCCTCCTCCCCGAAGACG---ATCGCACCGTAATTACATCGTTTAATTA
AACCCAACTCATTCATCTTCCTCCGTGGCTCTCATATA----------------GTACATGGGAGAGGTTCTGTCATGA-
--GCATCAAACCAATTTATCTTTTCCTTCAATTGACTGTGTTGCAGAAGAAGCTGAGCATTCCAATCACGGTGTCACGGG
TGCTCAAGTACATCCCGGAGCTGCAGAAGCAGGTGGAAGGCCTGGAGAAGAAGAAGGAGGAGCTGACGCGGGCCAGCTGC
AAGCCGGGAGTGCTGACCATGAGGGAGAACACAGCTCCGATTGTGTCCGCCACCTGCATCGACGACAGGGATATCATGGT
CCAGGTCAGCCTGGTGAGCACTATGGCTGGAGATCTGCCCATGTCCAAGTGCATCAACGTGCTGGAGAATGAAGGTCTTC
GCCTCATCAGCTCATCCACTTCCGCATTCCAGAACAGGACGTTCTACAGCCTTCATCTTCAGGTACACA-----------
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>SNPs
------S-------S--------------S-------------SS-----------------------------------
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-----------------------S------------S-------------------S------------S----------
---------------------------------------------------------S----------------------
-----S-------S--------------SS-----------------------------S-----------------S--
---SS-----S-----S--------------------S-----S-----------S-S---------------------S
-----------------S----------------------------------S---------------------------
---S-----------SSS----S---------------------------------------------------------
-------S-----------------S--------------SS--------------------------------------
----------------------------------------------S---------------------------------
---------------------------------------------S----------------------------------
----------------------------------------------------------------S---------------
--------------------------------------S--S------------------------S-------------
-----------------------------------S--S-----------------------------------------
--------------------------------------------------------------------S-----------
-----------------S------------SSSSS---------------------------------------------
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-------------S----------------SSSSSSS-SSSSSS----------S----------------S--------
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--------------------------------------------------------------------------------
----------------------------S---------S--------------------S--------------------
------------------------------S-------------------------------------------------
----------------------S---------------------------------------------------------
------------------------------------------------------S-----SS---------------S--
--S-----------------------------------------------S----S-S----SSS--SSSSSS--S-S--
--SSS--S-SSSSSS-SSSSSSSSS-S--------------------------------------------S--------
-----------------------------------------------------SS-------S-----------S-----
-------S----------S--------------------S--S-----SSSSSSS----------------S--------
----------------------------------------------------S---------------------------
---------S----------S---------SS------------S-----------------------------------
--------------------------------------------------------------S---------S-------
--------------------------------------S-----------------S---------------S-S-----
------------------------------------SS----------------------------------SS------
------------------------S---------SSS-S--S-S------------------------------------
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-----------------------------------------------------S-S----S---S------S--------
----------S--------------------S----------S-------S-----------------------------
--------S-----S----------S----------------S-------S---------------S--------S--S-
--------------S--------------S-------S-------------S--------SSSS----------S-S---
--SS----S------SS--S-------S-S-----------------------S---------S------------SSS
>forward_1505
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---------------------------------------------GCTCAACCTGATTGCATGGG---------------
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>reverse_3273
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------------------------------------------------------------------------GGGAGGTT
ACATGTGCCCTC--------------------------------------------------------------------
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-------------------------------------------------------------------------------
