>input_sequence_69509
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-----------------------------------------------ATGGCATGGCCACTGCTCCAGC---TCCTGCTC
ATCGCC---------GCCGCCG---CCGC----GGCAGGGGCGTCCTCAGCGACGACGCCTGACGGGCCGGCGCCATGGC
CGGAGCAGTTCCACGCGGTGCTGTTCACGAACCTGACCAACGTCTCGATTGCCTCGTCAGGCCCGCCGCTCCGCCTGCAC
GACCTGTACTACGACTGGCCGCGGCGGCGCAACCTGAACCTGATCCGGCACCAACTCTCAGGCGACCCGCTGTACGATGT
GGAGTGGAACAACGGCACCACCTTCTACTTCGACTCGGCCACGTGCCGCACGGAGCAGTTCCCCGTCGGCGTGCTCCGCC
CCGGGTGGCTCGCCGACGGCAGTGCTGTCTACCTCGGCCGCGAGACCACAGGCGGGTTCGAC------------------
-----------------------------------------------------------------TGCCACGTCTGGGGC
AAGGCCGGCTTCATCGTCTACTACGAGGACGCGCTCACGCGCCGCCCCGTCCGCTGGAACTTCATTGATGGTATACC---
CCCATTGC------TACTACTATT-----------------------------CCACGTGATGTCTGAACTTTACTGGAT
TTG-----ATGGAGCTTTGCATGGTTGCAGTGACGGGGATAGAGCAGTTTGTGATGAGCTTCGAGGTTGGCGTGGTGCTG
GAAGACGATTCCCAGTGGCAGGCGCCCGCGCACTGCTTCCTCGATGAAGCAGCC----------------------AACA
AGACCAACGAG------------------------------------------GATGGCGATCATGTCGCCGTTTCGAAT
GGCGT---------------------------------CATGGACGCGGCCAGGCTATTCAGGAAGTTTGCTGGAGCTGC
CGCCGCCTACTGA-------------------------------------------------------------------
--------------------------------------------------------------------------------
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-------------------------------------------------------------------
>chr3A_1_TraesCS3A01G084900
AAGCGATACAACTTTATTTCCATTGCTGCATCTTGCTTTTCGTGAGCTAATTCTGTACAAACAATAGATCATTTAT----
---------------------TGTAATGAGTGAACAATGGCCTGATAGAGAGTTTTCATGACCGTGTAACTTTACTTCTT
GACATAAGAAAGTAAAAGGTTCTGTGAGCTTCTTCTAGAAATAAATTTTGGTAGTTTTTAATGTCCCAGGTTCCTGATGT
TCTGACGAAACTAGCAGACAATATTGTTGTGAACCC--------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
----AATCTCCAAGAAGCTTGTGTGGCTAAAATTGTAACGAAGCTGTACATGAATCATATTTGCTGCCCATTCATTGCTT
TTGGTCGCTTGTGGTCAGTGGTACTTGGGTACTGCAT-------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
-------CAGCAAAATTCTAGTCACATTCTTACTGCGAAATTGGGAGGAAGTTGGCATTTGACCATGCAGGACAGGTGCT
GAATCAGATGATTTTGCATATCTTTACATTTGCCTATTCATATTGATATTCCTTGTGACTTTAATAGTCGGTCTTTTTGT
ACGGTGAACTTTAATAGTC----TGTCTGTCCCATCAAGTTCATATTCCAGCTAAAATCCAAATTTATATGAGCGTGCTA
ATATTTAGTGCTCCTACTTGTCTCGTGCAGCTTCGCTTGTAGCATAATGTAACTAAAAAATTCAGTACTGGAATTGATCA
TTCTTGCGGCAAATGGCCAATCTCCTAAATTTGGTGTAATTGGATCTGCATAATGACGCTGTATTTGGAACCATGCTAAC
AAGTGATATTATTTTATTTTACACAGAGTTGACGACATCGATTATGCGCTACTCATCACTGAAACTTGATA------TTC
GCTTCATTGTCAACC----CAATCGATAAATCTCCAAGAAGCTTGTGCGGCTGAAATTGCTGCACATGGAT----ATACA
TTTGCTGCC--------CACT-CATCCATTGCTTTTGGTCACTGGTGGTGGTCAC-------CCCTC-------ACTCAC
CAGCAGACAGACAGGTGTAACCAAAGATAAGGTCTGGG---ACAGACATGGCATGGCCACTGCTCCAGC---TCCTGCTC
ATCGCC---------GCCGCCG---CCGC----GGCAGGGGCGTCCTCAGCGACGACGCCTGACGGGCCGGCGCCATGGC
CGGAGCAGTTCCACGCGGTGCTGTTCACGAACCTGACCAACGTCTCGATTGCCTCGTCAGGCCCGCCGCTCCGCCTGCAC
GACCTGTACTACGACTGGCCGCGGCGGCGCAACCTGAACCTGATCCGGCACCAACTCTCAGGCGACCCGCTGTACGATGT
GGAGTGGAACAACGGCACCACCTTCTACTTCGACTCGGCCACGTGCCGCACGGAGCAGTTCCCCGTCGGCGTGCTCCGCC
CCGGGTGGCTCGCCGACGGCAGTGCTGTCTACCTCGGCCGCGAGACCACAGGCGGGTTCGAC------------------
-----------------------------------------------------------------TGCCACGTCTGGGGC
AAGGCCGGCTTCATCGTCTACTACGAGGACGCGCTCACGCGCCGCCCCGTCCGCTGGAACTTCATTGATGGTATACC---
CCCATTGC------TACTACTATT-----------------------------CCACGTGATGTCTGAACTTTACTGGAT
TTG-----ATGGAGCTTTGCATGGTTGCAGTGACGGGGATAGAGCAGTTTGTGATGAGCTTCGAGGTTGGCGTGGTGCTG
GAAGACGATTCCCAGTGGCAGGCGCCCGCGCACTGCTTCCTCGATGAAGCAGCC----------------------AACA
AGACCAACGAG------------------------------------------GATGGCGATCATGTCGCCGTTTCGAAT
GGCGT---------------------------------CATGGACGCGGCCAGGCTATTCAGGAAGTTTGCTGGAGCTGC
CGCCGCCTACTGATAATGTCTGAATATGAATACTTGGTGTG-TGTTTTCACACCTTGCTACTGGGGACATGG--------
--------------------------------------------------------------------------------
--------------------------------------------TTCATCCAACCATTGCTACTGGGGATGGCACTCTG-
AAAAAACTCACGCTGTTCAATTTAATTTCCTTTGTAG------CAAAGCTTACCTGTTTTCTCTCCCATGCACAAGTACT
GATCACAAGGCAACTAT---------------------------------------------------------------
--------------------------------------------------------------------------------
-------------------------------------------------------ATTGTGCTTAATCATTCTTGTAAAC
CCAAGTTTTGTTGTGCTTTCAACCTTAGTTTCAAAACTCAGACTG-----------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
-----GGTAAGAGAACCGCCGAGTGTCCTGTTTGCCACTTCACCCAATCATTTGCAAGCATGACTCATTAAGGTGTAC--
-TAGTGATCTAAACGCTCTTATAT-------------------------------TTCTTTACAGAGGTAGTATTATTTT
GTAGTTATGTTCATGTA--AAGCATCAAAGGATAACAGTCCCTTAGCAGGGTCCGTAGTTGCACAGGTCTTGCTGGCAGA
AACAAATATTCGGTGTTTGGCATTCTGCGCATCCCTGGCTCGTGTGTTAAGAAGGGCAAAAGGTTATTATATTTTGTGTA
GTTGCAAACTGAAAAATATGGCGAGCTGTTGACGAATCGATTTAAGTGTAAATTTACAAGGATATGTCGATGTATTTTGT
TAGTACACTCGAGGGGAAGTGGCAGGAGGGAAGCTCCAGCTTCCTTCACCCCATGGTTTAACGGCGCAGACCATGCCGCC
CGTACGGTACGTGGAAGCCCGATTCCGCTTGCATCACCGCTCCTCGCGCCTTCTCGTATCTTCTTCCCTCTTTTTCTTGT
TGGTGCGCGTCATCCTCATCTCGGCGGCGCTTACAGTTACACACATGATCCTCATCAGTGGCGAAGCCAGAAAAACTTAA
TAGGGGGGCAACTGATGTTAAATCATGTTAGGGAGGGTCAAAGCCAGCAAAATCATCATAATACACATATATTAGCAGCA
GATAATCCCTCATGTAGTGGCAAAATCTGCATGTTGACCTGGGCCGGGGCCCCTGCTAGCACCCCCG
>chr3B_1
AAGCGATACAACTTTATTTCCATTGCTGCATCTTGCTTTTCGTGAGCTAATTCTGTACAAACAATAGATCATTTAT----
---------------------TGTAATGAGTGGCCAATGGCCTGATAGAGAGTTTTCATGACCATGTAACTTTACTCCTT
GACATAAGAAAGTAAAAAGTTTTGTGAGCTTCTTCTAGAAACAAATTGTTGTAGTTTTTAATGTCCTAGGTTCCTGATGT
TCTGACAAAATTAGCAGACAATAATGTTGGTAAAAAAATGTGCATA-CAAGGAAAGATACTTAGATGGTGTGGTTCACAA
GAGGATCTGTATAGTTCAGTAGTGTTTGTCTCGGGCAGTTTCGCTTGTAGCATGTAATTAAAAATGTTCAGTAGTGGAAT
TGATCATTCTCACAGCAATGGCCATTCTCCTAAATTTGCTTGTCCATAGAGGCATGGTCTGAGTGCTCCTTTCGTTGTCA
ACCTAATCTCCAAGAAGCTTGTGTGGCTAAAATTATAACGAAGCTGCACATGAATCATATTTGCTGCCCATTCATTGCTT
TTGGTCATTGGTGGTCAGAGGTACTTGGGTACTGTAT-------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
-------CAGCAAAAATCTAGTCACATTCTTACTGCGGAATTGAGAGGAAGCCAGCATTTGACCATGCAGGACAGGTGCT
GAATCAGATAATTTTGCACATCTTTACATTTGCCTATTCATATTGATATTCCTTGTGACTTTAATAGTCGGTCTTTTTGT
ACGGTGAACTTTAATAGTCTGTCTGTCTGTCCCATCAAGTTCATATTCCAGCCAAAATCCAAAGTTATATGAACGTGCTA
ATATTTAGTGCTCCTACTTGTCTGGTTCGGCCTCGCTTGTAGCATAATGTAACTAAAAATTTCAGTAGTGGAATTGATCA
TTCTTGCGGCAA-TGGCCAATCTCCTAAATTTGGTGTAATTGGATCTGCATAATGACGCTGTATTTGGAACTATGCTAAC
AAGTGATATTATT-----TTACACAGAGTGGACGACATTGATTATTTGGTACTCATCACTGAAACTTGATACTCCTATTT
GCTTCATTGTCTCTT----CACTTGATAAATCTCCAAGAAGCTTGTGCGGCTGAAATTGCTGCACATGGATTGGTATACA
TTTGCTGCC--------CATT-CATCCATTGCTTTTGGTCAGTGGA------CAC-------CCCTC-------GCTCAC
CAGCAGACAGACAGGTGTAACCAAAGATAAGGTCCGGG---ACAGACATGGCATGGCCACTGCTCCAGC---TCCTGCTC
ATCGCC---------GCCACCACCACTGC----AGCGGCGTCGTCCTCAGCGACGACGCCTGACGGGCCGGCGCCATGGC
CGGAGCAGTTCCACGCGGTGCTGTTCACGAACCTGACCAACGTCTCGTTCGCATCGACGAGCCCACCGCTCCGCCTGCAC
GACCTCTACTACGACTGGCCGCGGCGGCGCAACCTGAACCTGATCCGGTACCAGCTGTCCCGCGACCCGCTGTACGACGT
GGAGTGGAACAACGGCACCAGCTTCTACTTCGACTCGGCCACCTGCCGCACGCTGCAGTTCCCCGTCGGCATGCTCCGCC
CCGGGTGGATCGCCGAGGGCGGCGCCGTCTACCTCGGCCGCGAGACCACCGGCGGGATCGAC------------------
-----------------------------------------------------------------TGCCACGTCTGGGGC
AAGGCTGACTTCATCGTCTACTACGAGGACGCACTCACGCGCCGCCCCGTCCGCTGGAACTTCATTGATGGTATGTACGG
CCCGGCCGCGATCCAT-------------------------------ACATCCCCACGTGATGTCTGAACTTTACTGGAT
TTGATTTGATGGAGCTTTGCATGGTTGCAGTGACGGGGATAGAGCAGTTTGTGATGAGCTTCGAGGTGGGCGTGGTGCTG
GAAGACGATTCGCAGTGGCAGGCACCCGCGCACTGCTTCCTGGACGACGCAGCC----------------------AACA
AGACCAACGAG------------------------------------------CACGACGATCATGTCGCTGTTTCGAAT
GGCGT---------------------------------CATGGACGCGCTCAGGCTATTCAGGAAGTTTGCTGGAGCTGC
CGCCGCCTACTGATAATGTCTGAATATGAATACTTGGTGTTTTTTTTTCACACCTTGCTACTGGGGAAATGG--------
--------------------------------------------------------------------------------
--------------------------------------------TTCATCCAACCATTGCTACTGGGGATGGCACTCTG-
GAAAAACTCACGCTGTTCAGTTTAATTTCTTTTGTAC------CAAAGTTTACCTGTTTTTTCTCCCATGGACAAGTACT
GATCACAAGGCAACTATTGAGTG--TGACTTATAGCTTACTTAAAGATAACACCTTTCTGCCTGCATCCATCAATATTTT
GAAATTTCTTTTGGAAGCCTACATATGAAGTTGAGACATGTTT---------AATACTATGTAGTTTCTGATGCATAAGT
ACCTCTGTAACTGTCTGTATTTCCTAGACCTCTAATCTCCCTAAGTTCATGTTATATTGTGCTTATTCATTCTTGTAAAC
CCATGTTTTGTTGTGCCTACAACCTTAGTTTCAAAACTCAGACTG-----------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
-----GGTAAGAGAACCGTCGAGTGTCCTGTTTGCCAGTTCACCCAATCATTGG-AAGCATGCTCATTAAGTACTCGAAA
ATAGTGATCTAAACGCTCTTATAT-------------------------------TTTTTTTACAGAG--GTAGTATTTT
CTAGTTATGTTCATGTACTAAGCATCAAAGGATAACCGTCCCTCAGTAGGGTCCATAGTTGCACAGGTCTTGCTGGCAGA
AACAAATATTCGATGTTTGGCATTCTGCGCATCCCTTGGC----------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
-------------------------------------------------------------------
>chr3D_1
AAGCGCTACAACTTTATTTCCATTGCTGCATCTTGCTTTTAGTGTGCTAATTCTGTACAAACAATAGATCATTTATACCC
GTCAAACAATGGATCATTTATTGTAATGACTGGACAATGGCCTGAT--AGAGTTTTCATGACCATGTAACTT-----CTT
GACATAAGAAAGTAAAAAGTTCTGTGAGCTTCTTCTAGAAACAAATTGTGGTAGTTTATAATGTCCTAGGTTTCTGACGT
TTTGACAAAATTAGCAGACAATAATGTCGCTAACAAAATGTGTCATGCAAGGCAACATACTTAGATGGTGTGATTCACAA
GAGGATCTCCGTGTGGCCAGTTTATGTGGTGTATAGTTTGTTTTATTCTTTATTTATAGTCTAAACTGAAGCAGTGAAAT
TTCAGAAAAAATCTATATTGTATTTTGCTTCATTAATATGTATTTTACTGCAATTTATAG--------------------
--------------------GTTAGGTTAGATTTCTTAGACTAATCTACCTGAATCGTATCTTGTATCTAATTTCTAACT
ATTCTACAGTTAGGCCAACTAAAATACATGAGCTAAAATTTCATTGCGAGCCATGAAATGAACAGACAAAAAATCGTTCA
CGTGAAAGTTTACCACCACCACAATCAACCTGATAAAACTGTCACTCAGCTCACCTCTTGGTTCTGCTCTCCGTTTTGTA
CCTTTAACATGATCAACACCAAAAAATAAACAGGCATTACCACGGGCGTGGTGTGCGCTGCGCTTTCTGGCGCTAGTGCA
GCTTCAACTGTTGTAAGAACTGATGACATAGTGTATTAGTTCCATACAACAGCTCTTCTCAGAGATATGATAACTGTCGA
ACCATGTTGCAAGATATTTTCTTGTTCTCCTTCTAAGGGAGGAAATGTTTGACTGAAAAGCAGCACTGCACTGCTGTACT
GTATCAGCAGCAAAACTCTAGTCAAATTCCTACTGCGAAACTGGGAGGAAACCAGCATTCGACCATAAT----AGGTGCT
GATTCAGATAATTTTGCATATCTGTACATTTGCCTATTCATATTGATATTCCTTAGC-----------------------
----------------------CTGGCTGTCCCATCAAGTCCATCTTGCAGCCAAAATTCTAATTTATATGAACGCGCTA
ATATTTAGTATTTGT-------TCGTGCGGCTTCGCTTGTAGCA---TGTAACTAAAAAGTTCAGTAGTGGAATTGATCA
TTCTTGCAGCAA-TTGCCAATCTCCTTAATTTGGTGTAATTGGATGTGCATAATGACGCTGTATTTGGAACTATGCTAAC
AAGTGATATTATT-----TTACGCAGAGTTGACGACATCGATTATGCGGTACTCATCGCTGAAACTTGATA------TTT
GCTTCATTCTCTCTG----AACTTGATAAATCTCATAGAAACTTGTGCGGCTGAAATTGCTGCACATGGAT-GGTATAAA
TTTGCTGCC--------CAGT-CGTCCATTGCTTTTGGTCAGTGGT------CAC-------CCCTCACTCACCACTCAC
CAGCAGACAGACAGGTGAAACGGAGGATAAGGTCTGCGACAACAGACATGGCATGGCCACTGCTCCAGC---TCCAGCTC
CTGCTCATCGCCGCTGCCGCCACCACTGC----GGCGGCGGCGTCCTCAGCGACGACGCCCGATGGGCCAGCGCCGTGGC
CGGAGCAGTTCCACGCGGTGCTGTTCACGAACCTGACCAACGTCTCGATCGCATCGACGAGCCCGGCGCTCCGCCTGCAC
GACCTCTACTACGACTGGCCGCGGCGGCGCAACCTGAACCTGATCCGGTACCAGCTGTCCGGCGACCCGCTCTACGACGT
GGAGTGGAACAACGGCACCAGCTTCTACTTCGACTCGGCCACCTGCCGCACGCTGCAGTTCCCCGTCGGCGTGCACCGCC
CTGGGTGGATCGCCGAGGGCGGCGCCGTCTACCTCGGCCGCGAGACCACCGGCGGGATCGAC------------------
-----------------------------------------------------------------TGCCACGTCTGGGGC
AAGGCTGACTTCATCGTCTACTACGAGGACGCGCTCACGCGCCGCCCCGTCCGCTGGAACTTCATTGATGGTATGTACGG
CCCGGCCGCGATCCAT-------------------------------ATATCCCCATGTAATGTCTGAACTTTACTTGGT
TTG-----ATGGAGCTTTGCATGGTTGCAGTGACGGGGATAGAGCAGTTTGTGATGAGCTTCGAGGTGGGCGTGGTGCTG
GAAGACGACGACCAGTGGCAGGCACCCGCGCACTGCTTCCTGGACGACGCAGCC----------------------AACA
AGACCAACGAG------------------------------------------CACGACGATCATGTCGCTGTTTCGAAT
GGCGT---------------------------------CATGGACGCGGTCAGGCTATTCAGGAAGTTTGCTGGAGCTGC
CGCCGCCTACTGATAATATCTGAATATGAATACTTGGTGTG-TTTTTTCACACCTTGCTACTGGGGAAATGG--------
--------------------------------------------------------------------------------
--------------------------------------------TTCATCTAACCATTGCTACTGGAGATGGCACTCTG-
AAAAAACTCGCGCTGTTCAATTTAATTTCTTTTGTAC------CAAAGTTTACATGTTTTCTCTCCCATGCACAAGTACT
GATCGCAAGGCAACTATTGAATGTTTGACTTATAGCTTACTTAAAGATAACACCCTTCTGCCTATATCCACCAATATTTT
GAAATTTCTTTTGGAAGCTTACATACGAAGTTGAAACATGTTTATGCAAAGTAATAGTATGTAGTTTCTGATGCATAAGT
ACCTTTGTAACT----GTATTTCCTAGACCTCTAATCTCCCTAAGTTCATGTTATATTGTGCTTAATCATTCTTGGAAAC
CCATGTTTTATTGTGCTTGCAACCTTAGTTTCAAAACTCAGACTGCATGCTCGCCGTGGGGAGGTGGACCATGCCTTCAC
GGCTTCAACAACAAGGTGCTGCGGCGGCGGCGGTGTGAGACGACATGGACGAGCTCCGTAGGGCTTGAGCGGAGGTGTGC
GACGATACGGACGAAAGTCCTGCACAACAAGAGCCGGTGCCGATGGCGCCTGAGGGTATCATTTTCCTCCTTGGAGGCGC
CACCGAGGTGTGTCGGCATCTTCCTCGGGCTTGGTTGGTAGTGTCTCCGGGCGAAAGCCTAGGTCCGGTTGGATCGGTGT
GATGACGGCGTCTCCGACGTCGTTCCTCTGTTGGGAGCATCACGTTTTTGAGACACTGCTTGGAGGTTCTATGTGGCGCT
CCTCCGGTGCTCGCCGCTGTTTTTGGTGAAGCTCGAGGCGCAATGTACGCCATTGCTGATAAGTCCAAGACGAAGCTTTG
TCTGGGACCGACCGAGTTCCGCCATCTGCCTGCACTCTGCTTCAAGGGTGGATGGCGCGTTGGCAAAGAAAGTCTTAGTT
GGAGCTGCTGCTGTCTTTGGAGGATACCGGCGTTGGTCAAGTGACGCGGCGGTGACGCTTAGCCTAGGACAGGCCCTTTT
TGCTTTGTAGTCGTGTTGGCTGTGATGGTAGCTCAGCAGCTAATAGGGCTGTCGTTTCTTTTTCTTTGATCTTCGGATCT
TCATCGTGTTGTTCTTCCGCTGCTTCCTGCTAAATCGAATCAAACCAGCATTTTGCTGGATCTTTCAAAAAAAAAACTCA
GACTGGGCAAGAGAACCGTCGAGTGTCCTTTTTGCCGGTTCACCCAATCATTGG-AAGCATGGCTCATTAAGGAGTAC--
-TCCCTCCGTAAAGAGTATAAGAGCGTTTAGATCATTAATGATCTAATTCTTATATTTCTTTACAGAG--GTAGTATTTT
ATAGTTATGTTCATGTA--AAGCATCAAATGATAACAGTCCCTCAGTAGGGTCCATAGTTGCACAGGTCTTGCTGGCAGA
AACAAATATTCGATATTTGGCATTCCGCGCATCCCTGGCTCGTGTTTTAAGAAGGGCAAAAGGTTATTGTATT-------
--------------------------------------------------------------------------------
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-------------------------------------------------------------------
>chr3D_648
--------------------------------------------------------------------------------
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--------------------------------------------------------------------------------
------------------------------------------------------AAAAAAATCAGCAGTGGAATTGACCA
TTCTTGCGGCAA-TGGCCAATCTCCTAAACTTGGTGTAAGTGGATCTGCATAATGACGCTGTATTTGGAACTATGCTAAC
AAGTAA-------------------------------------------TACTCATCACTGAAACATGATA------TTT
GCTTCATTGTTTCTTATATAACTTGATAATTCTCCAAGAAGCTTGTGCGGCTGAAATTGCTGCACATGGAT-GGTATAAA
TTTGCTGCC--------CATTCCATCCATTGCTTTTGGTCACTGGTGGT---CACCCCTCAGCCCTCACTCACCACTCAC
CAGCAGACCGACAGGTGAAACCAAAGATAAGGTCCGGG---ACAG--ATGGCATGGCCAGTGCTCCAGCAGCTCCTGCTC
ATCGCC---------GCCGCCACCACTGC----GGCGGCGTCGTCCTCAGCGACGACGCCTGATGGGCCGGCGCCCTGGC
CGGAGCAGTTCCACGCGGTGCTGTTCACGAACCTGACCAACGTCTCGATTGCTTCAACGGGCCCGCCGCTCCGCCTGCAC
GACCTGTACTACGACTGGCCGCGGCGGCGCAACCTGAACCTGATCCGGCACCAGCTCTCGGGGGACCCGCTGTACGACGT
GGAGTGGAACAACGGCACCACCTTCTACTTCGACTCGGCCACCTGCCGCACGCAGCAGGTCCCCGTCGGCGTGCTCCCCC
CCGGGTGGCTCGCCGACGGAGGCGCCGTCTACCTCGGCCGCGAGACCACCGGCGGGATCGAC------------------
-----------------------------------------------------------------TGCCGCGTCTGGGGC
AAGGCCGACTTCATCCTCTACTACGAGGACGCGCTCACGGGGCGCCCAGTCCGCTGGAACTTCCTTGACGGTATGCACAT
CCCCATTGCTACTGCACTACTGTTTGTTTATCAGCTCCGAAAAATCCATGTACGTACGTGATGTCTGAAACTTTATGGAG
GTCTGCA----------TGCATGTTTGCAGTGACGGGGTTACAGCAGTTCGTGATGAGCTTCGAGGTGGGCGTGGTGCTG
GAAGACGACGACCAGTGGCAGGCGCCCGCGCACTGCTTCCTGGATGAAGCAGCC----------------------CACG
GGACCAACGAG------------------------------------------GATGACGACCATCTGGATGAATGGC--
-------------------------------------------AGGCGGCCATGCTATTCAGGAAGTTGGCTGGAGCTGC
TGCCGCGTACTGAACATGTCTGAATCTGAATA------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
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-------------------------------------------------------------------
>chr3B_813
--------------------------------------------------------------------------------
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--------------------------------------------------------------------------------
-----------------------------------------------------------TGAAACATGATA------TTT
GCTTCATTGTTTCTTATATAACTTGACAAATCTCCAAGAAGCTTGTGCGGCTGAAATTGCTGCACATGGAT-GGTATAAA
TCTGCTGCC--------CACA-AATCCATTGCTTTTGGTCACTGGTTGT---CAC-------CCCTCACTCACCACTCAC
CAGCAGACCGACAGGTGAAACCAAAGATAAGGTCCGGG---ACAGAGATGGCATGGCCACTGCTCCGGCAGCTCCTGCTC
ATCGCC---------GCCGCCACCACCGC----GGCTGCGTCGGCCTCAGCGACGACGCCTGACCGGCCGGCGCCGTGGC
CGGAGCAGTTCCACGCGGTGCTGTTCACGAACCTGACCAACGTCTCGATTGCTTCAACGGGCCCGCCGCTCCGCCTGCAC
GACCTGTACTACGATTGGCCGCGGCGGCGCAACCTGAACCTTATCCGGCACCAGCTGTCCGGGGACCCGCTGTACGACGT
GGAGTGGAACAACGGCACCACCTTCTACTTCGACTCGGCCACCTGCCGCACGCAGCAGGTCCCCGTCGGCGTGCTCCCCC
CCGGGTGGCTCGCCGACGGAGGCGCCGTCTACCTCGGACGCGAGACCACCGGCGGGATCGAC------------------
-----------------------------------------------------------------TGCCACGTCTGGGGC
AAGGCTGATTTCATCGTCTACTACGAGGACGCGCTCACGGGCCGCCCCGTCCACTGGAACTTCCTTGACGGTATGCACAT
CCCATTGC------CACTACTGTTAGTTTATCAGCTCCAAAAAATCCATGTACGTACGTGATGTCTGAAACTTTATGGAG
GTCTGCA----------TGCATGTTTGCAGTGACGGGGTTACAGCAGTTCGTGATGAGCTTCGAGGTGGGCGTGGTGCTG
GAAGATGACGACCAGTGGCAGGCGCCCGCGCACTGCTTCCTGGATGAAACTGCT----------------------AACC
GGACCAACGAG------------------------------------------GATGACGACCATCTGGATGAATGGC--
-------------------------------------------AGGCGGCCAGGCTATTCAGGAAGTTTGCTGGAGCTGC
TGCCGCGTACTGAACATGTCTGAATCTGAATA------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
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--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
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-------------------------------------------------------------------
>chr3B_848
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
------------------------GATAAATCTCCAAGAAGCTTGTGCGGCTGAAATTGTTG-----------------A
TTTGCTGCCTATTCAATCACT-CATCCATTGCTTTTGGTCACTAGTGAT---CATTACCCTCA-----------ACTCAC
CAGCAGACAGACAGGTGTAACCAAAGATAAGATCCGGG---ACAGGCATGGCATGGCCACTGCTCCAGC---TCCTGCAC
ATTGCC---------GTTGCGGTGGTGGTGGCGGGCTGCTACGTCCTCAGCGACGACGCCTGACGGGCCGGCGCCAAGGA
CGGAGCAGTTCCACGCGGTGTTGTTCACGAACCTGACCAATATGTCGACGGCGTCACCGAGCCCGCCGCTGCGCCTGCAC
GACCTCTACTACGACTCGCCGCAGC-GCCCAGTCTGAACTTGATGCCACCATCACCGGCT--------------------
----------------------------------TCAGCCAGCTGCCGAAGACAGGATCTTCACCCGGATCTGCCGCATG
AGACTCCAACCAACAACTGTGTATCT-------------GCGAGACCACCTTCAAAGCCCCGGATCTGGCAGCCCAGGTC
CGGTGAGCATCCACAGCCGCACTGCCACTACGGTGGACCCTGACGCTCCAGCCACTGCCGAAGGGTGCCACCTCTGGAGC
ATGGAGGAAGGGCTGC-----------------------------------------------------------CACAT
CACCGTGC------CA----------------------------------------------------------------
---------------------------------------------------------------------------TGCCG
GAAGAGCCATTA----GGAAGGAGCCCAAGCACGCTCTTCACCATCTCTGTACCAAACAGGAATCGTAATCGAAAACACC
GGACCACCGGAGCAGCTCCAACTTGGACATGGGTAACTCCATGCCTTGCAGTCGAGGACGACCAATGCATCATCGGCCGC
CACCGCCCAAGGCCGCCGCCCCTTAATCTGCCACCACGCAGCGAGGCGGCCACACCGATCAGGCCATGACCAGAGTCCAC
CCCCGCATGTACCCAACCCGATCTACCCAACCAGGTCCTCCATATAGCGTCCACGCTGACGGATATGGCAACCCAGGCGA
CTAGGGTTTGTGAGACCACCCGAGAATAGAGAGGTTACACCGCTGCATAGAGAAGGAAAATTTTGGGGGGAGGGGGGAGG
GGGTAATTTCACTTCCCTGGCCAAAAGGTTCTTTTTATATTAGTTTCGTCCAACCATTGCTGCCGTGGATGTCACTCTAA
AAAAAACTCACGTTTTTCAATTTAATTTGTTTTGTACTGCTAGCAAAATTTACCTGTCTTCTCTCCCATGCACAAGTACT
GATCAC--------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
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--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
-------------------------------------------------------------------
>SNPs
--------------------------------------------------------------------------------
--------------------------------S------------------------------S------------S---
-----------------S-----------------------S-----S------------------S-------------
------S---S------------S-----SS---SS--------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
----------------------------------S---------------------------------------------
------SS----------S---------------S---------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
---------------S-----------------------------------SSS--------------------------
---------S----------------------------------------------------------------------
----------------------------------------------------S-------------------S-------
----------------------------S--------------------------------------S------------
------------S----------------------------------------------------------S--------
-------------SSSSS------------------------------S------------------------------S
-----------SSSS------S-S--------------------------------------------------------
-------------------------------------------------SSS----------------------------
--------------------------------------------------------------------------------
------------------------------------S-S-----------------------------------------
----------------------------------------------------S---S-S---------------------
-----------------------------------------------------------S-----------------S--
------------------------------------------S---------S---------------------------
--------------------S-S--------------------------S------S-----------------------
--------------------------------------------------------------------------------
-------S------------------------------------------------------------------S-S---
--------------S------S----------------------------------------------------------
-------------------------------------------------------------------S------------
--------------------------------------------------------------------------------
---------------------------------------------------------S----------------------
--------------------------------------------------------------------------------
-------------------------------------------S-----------------------S------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
-----------------------------S------S-----------S-------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
---S--------------S-------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
------------------S------------------S--------------S-S-------S----------S------
---------------------------------------------------------S---SSSSSS-SS---S------
S------------------------------------------S--S-------S-------------------------
------------S--------------------------------S----------------------S----SSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
>forward_579
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
-------------------------------------------------------------------------------T
TTGGTCGCTTGTGGTCAGT-------------------------------------------------------------
--------------------------------------------------------------------------------
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--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
-------------------------------------------------------------------
>reverse_4337
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
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--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
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--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
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--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
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--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
----------------TATGGCGAGCTGTTGACGAA--------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
-------------------------------------------------------------------
