>input_sequence_69506
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---------------------------------------------------ATGGCCAACAGCTGCAGAGAACACAAGCG
TGGCGTTCCACGTCCACCACCATTGTCGCTCTTCATTGCTAGGGAGCAAGAGCCAGCGGTCGCGTGGACACACCCGGCTG
CTGCCGACAACAGCAACAAGAAGAGGATGTTGTCCAAGCAGCTTTCCATGAAGGAGACCACCCGGGAGGTCAAGTGGGAG
AAGCGGCGGCGGCAGATACAACGACAAAGGAGCAGCATGGGCCTGTACGATGCCGACCGCGTGGGATGCGCTAACATGCA
CGCCACTGCGAACGGTGTGACTGACGAGGACCTGGATGAGCTTAAGGGATCCATGGAGCTTGGCTTCGGGTTCAACGAGG
AGAACGGAGGCCAGAACCTTTGTGACACGCTCCCTGCCCTCGATCTGTATTTCGCCGTCAACCGACAGCTATCTGAGCCA
AAGATGCGGGTGTGCAGCCGCTCATTGCCTTCCCTTTCTGTGGTGACCTCCTCATCATCCATGCACTCCGGCACACCGAG
CCCGGCCGGCAGTCCTACCGCTCAGCCCTCCCTCCTTGACTCATTGAAAATTAGCAGTCCAGGTCAGTAACGTTGTATGT
TTCC-TTGTTAATTTCTTCCTAGTATAGATTATAAAAGAACCACCAGCTTATGTTATTATGTGGTCGGCTATTTGGTCCT
TTGACTCATGCAGCAGGCGAGAACCCGCAGCTTATCAAGACAAGGCTAAGGCAGTGGGCTCAGGTAGTGGCTTGTTCAGT
GAAGCACTCCAGCTGA----------------------------------------------------------------
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>chr2B_1_TraesCS2B01G288200
TTTTTCTACTTATAGTGCTATATGTGGGGTACGAGTTGTACAACTATGCAGTTTGTGTACATGTACTAGTCGCGTTGAGC
AAAGGTTGTGCTATACATGGAGTGCAATTTACAT--CGCTTGCACGCTGATCCGTAGTGTGTACGTGGTTCTGATGTTAA
CTTACAACTTTATG--GCTTGACTGTCGATGGCAGATGGGACTGATAAGATCTATGAAGTGATTTCTCCTGAAGATGGGA
TGACGGAAGATGGTGGCAGTGGATCCCGGAGCGTGCGCAGGCGGTGCACGTTATGGGATGCCTAGACCGGATGGTCTTAA
GGTCATTGGATTAGATTG--TCTGTTATCCGGACAAGGCACATCTGTATACTTATAGGTGTAGCAACTTTGTTTCGCTTA
GAAGGTGGCTTTGGGTTGATCCTTATA-TTTATTTGTCAGGTTCTGGTGAATAATTAATAAAGATGGTTGTGTGCATCAT
GCTGATGTGAAGGCCGGGGCAATCATCCTTCTCGAAACGAAAAAACCAA---TTTTTCTTACCCATACACATACTTCATA
TATTACTTAGGTTAGATTTCACCCATGCCTACTCGAGA-TAAACCTTAAAATAGCTAGCATCCTCTTGGTCTATGCCAAA
TTTGTCTACAGCCTGTAAGTAGTCAAGCCGAGTGGCACGGGTGGCCTACGGTTAGTAACAACCATCCGGCATGGTTAGCA
TTTGGAGTTTATAGAAGAGGCATCCCGATCAATGAAACGAGGTTATACTCCTATTTTTGGGTTGTTGTTCCTCCTCTCGC
CTCCTTCATATGAGAGGAGCATCACCTCCCTTTCTCGTCTTCCCAACATTCCTGCTCTCCTTCCTCCTGCCGCAGCTGTC
GTGATTCGGCAGCTGCTGGGAGCCAACTCGGCAATCCGCCATCCATTCGGAGGAGGGAAGGCAACGTTAGCTGCAGCACA
TTCGATAGCCAACACACATTACACCGTTACAGAGAAACCATTGCACAAACAATGGCCAACAGCTGCAGAGAACACAAGCG
TGGCGTTCCACGTCCACCACCATTGTCGCTCTTCATTGCTAGGGAGCAAGAGCCAGCGGTCGCGTGGACACACCCGGCTG
CTGCCGACAACAGCAACAAGAAGAGGATGTTGTCCAAGCAGCTTTCCATGAAGGAGACCACCCGGGAGGTCAAGTGGGAG
AAGCGGCGGCGGCAGATACAACGACAAAGGAGCAGCATGGGCCTGTACGATGCCGACCGCGTGGGATGCGCTAACATGCA
CGCCACTGCGAACGGTGTGACTGACGAGGACCTGGATGAGCTTAAGGGATCCATGGAGCTTGGCTTCGGGTTCAACGAGG
AGAACGGAGGCCAGAACCTTTGTGACACGCTCCCTGCCCTCGATCTGTATTTCGCCGTCAACCGACAGCTATCTGAGCCA
AAGATGCGGGTGTGCAGCCGCTCATTGCCTTCCCTTTCTGTGGTGACCTCCTCATCATCCATGCACTCCGGCACACCGAG
CCCGGCCGGCAGTCCTACCGCTCAGCCCTCCCTCCTTGACTCATTGAAAATTAGCAGTCCAGGTCAGTAACGTTGTATGT
TTCC-TTGTTAATTTCTTCCTAGTATAGATTATAAAAGAACCACCAGCTTATGTTATTATGTGGTCGGCTATTTGGTCCT
TTGACTCATGCAGCAGGCGAGAACCCGCAGCTTATCAAGACAAGGCTAAGGCAGTGGGCTCAGGTAGTGGCTTGTTCAGT
GAAGCACTCCAGCTGAGAGCGCTGGTTGCAATGAACCACCCATCCTGCAGAACCGTTGTACATCCAAGTGTTCCATTAGA
CGACGAGGGAGAGGACATGACCTGTGGTGCAATTAACACAACGTCGTAACCTTGTTGCTCTGGTGACGCCCATGGTTGTT
GTGCATAGTTTAGTCTGTATGTATGTGTTGGCAACATTAATGCACCGCCCCCTGTATTGACAGGACAACATTTGATGCAA
GGACATTCTTCTTGTTCACCAACTTCTTTAGAAACACTAACTCTTGCTGAAACATTTCCAT-AAAAAACTAGGCATGCAC
ACTGGCAAGATATATTCGACTAAAACACACTCATCCAAGGAGACAAATATCCTCCAAAAACCATCACTAACTGTTTTGTA
CAGATTGTAGGGGAGAAAAGTTGGGCCGATAAAATTTTGGTTTTGAATCAGAGATTTTAGATGGGCATATGTAATACAAC
ACTGAATGTCTGAAATTAAATTGGGCGTTCCAATACAGTACTTGCACCTCTGACTGCTGAAGATGTTCGTTAAATATGCA
TACGCTGTGTGAATTACTTGTCCACGACACAAGTTAAATGATGTTATCATCATCCATCATCAAATGCATGCTTTTGATTG
GACTTAACGCAAATCCCTCATGTGAATATCACAATTTCTTCTATGGATTCTCAAGCCTCAGATACAA-ATGTGGCTTATT
GGGCATCTCCAAACGTTGACGTTAAACAGACACTCT--CATATGTTTGTGGACATCTGACCGGGCGGACACCATCGAACA
CTATCCTTTGAACCTTTTCGAGTTCAAACAT-TTCAAAGTCACAATTTCGACAAAATTTAGGCTAGTTCGATATATTACA
TTCAAATTTAACTAGTTTAATATAAACTACTCAAATAAAAATTATTTTCACCCGCAAAAAAAATATAAACTACTCAAAAT
TAAAATAAACTAATGCATGGCCTTCGAGGCCACTAGGATCGCAATCCTCATTGTGACACTT
>chr2A_1
TTTTTCTAGTTATGGTGCTATGTGTGGGGTATGAGTTGTACAATTGTGCAGTTTGTGTACATGTATTAGCCGCATTGAGC
AAAGGTTGTTATATACATGGAATACAAGTTACAACACGCTTGTACCCTGATCCTTAGTGTGTATGTGGTTTTGACGTTAA
ATAACAACTTTTTGTGGCTTGACTGTCGACGACAGATGAGACTGACAAGATCTATGCAGTGATTTATCCTGAAAACGGGA
TGATGGAAGATGGCGGTTGTGGATCCTGGAGCATGCATAGGCGGTGCATGTTATGGGATGCCTAGACCAGATGGTCTTAA
GGCCACTAGATTAGATTGTGTCTGTTATGCGAACAGGGCACATCTATATACTTGTAGGTGTAGCAACTTTGGTTTGCTTA
GAAGATGGCTTTGGATTGATCCTTGTA-TT-ATTTGTCAGACTCTAGTGAATAATTAATAAAGATGGTTGTGTGCATCAT
GCTGATGCGGAGGCCGGGGTAATCCTTCCTTTCGAAATAAAAAGAATGA---TTTTTCTTACCCATACACACACTTCATA
TATTACTTGAGTTAGATTTCACCCATGCGTACTCGAGAGTAAACCTTAAAATAGCTAGCATCCTCTTGGTCTATGCCAAA
TTTGTCTACGACCTGTAAGTAGTCAAGCCGAATGGCGCGGGTGTCCTATGGTTATTAACAACCATCCGGCATGGTTAGCA
TTTGGAGTTTGTAGAAGAGGCATCTCGATCAATGAAACGGGGTTATACTCCTATTTTTGGGTTGTTGTTCCTCCTCTCGC
CTCCTTCATATGAGAGGAGCATCACCTCCCTTTCTCGTCTTCCCAACATTCCCGCTCTCCTTCCTCCTGCCGCAGCTGTC
GTGATTCGGCAGCTGCTGGGAGCCAACTCGGCAATCCGCCATCCATTCGGAGGAGGGAAAGCAACGTTAGCCGCGGCCCA
TTCGATAGCCAACACACACTACATCGTTACAGAGAAACCATTGCACAAACAATGGCCAACAGCTGCAAAGAACACAAGCG
CGGCGTTCCACGTCCACCACCATTGTCGCTCTTCATCGGTAGGGAGCAAGAGCTAGCGGGCACGCGGACACACCCGGCTG
CTGCCGACAACAGCAACAAGAAGAGGATGTTGTCCAAGCAGCTTTCCATGAAGGAGACCACCCGGGAGGTCAAGTGGGAG
AAGCGGCGGCGGCAGATACAACGACAAAGGAGCAGCATGGGCTTGTACGAAGCCGACCGCGTGGGATGCGCTAACACGCA
CGCCACTGCGAACGCTGTGACCGATGAGGACCTGGATGAGCTCAAGGGATCCATGGAGCTTGGCTTCGGGTTCAACGAGG
AGAACGGAGGCCAGAACCTCTGCGACACGCTCCCTGCCCTCGACTTGTATTTTGCCGTCAACCGGCAGCTCTCCGAGCCG
AAGATGCGGGTGTGCAGCCGCTCATTGCCTTCCCTTTCTGTGGTGACCTCCTCATCATCCATGCACTCCGGCACGCCCAG
CCCAGCCGGCAGTCCTACCGCTCAGCCCTCCCTCCTTGACTCGTTGAAAATTAGCAGTCCAGGTCAGTAACGTCGAACGT
TTCC-TTGTTAATTTCTTCCTAGTATAGATTCCGAAAGAACCATCATCTTATGTTATTATGTGGTCGGTTGTTTGGTCCT
ATGACTCATGCAGCTGGCGAGAACCCACAGCTTATCAAGACAAGGCTAAGGCAGTGGGCTCAGGTAGTGGCTTGTTCAGT
GAAGCACTCCAGTTGAGAGCGTTGGCTGCAATGAACCACCCATCCTACAAAACCGTTGTACATCCGAGTGTTCCATTAAA
CGACGAGGGAGAGGACATGACTGGTGGTGCAATTAACACAACGTC-TAACCTTGTTGCTCTGTAGACGCCCATGGTTGTT
GTGCATAGTTTAGTCTGTATGTATGTGTTGGCAACATTAATGCACCGCCCCTTGTATTGACAGGACAACATTTGATGCAA
GGACGTTCTTCTTGTTCACCAACTTCTTTAGAAACACTAACTCTTGCTGAAAAATTTCCAT-AAA-AACTAGGCATGCAC
ACTGGCAAGATATAGTCGACTAAAACACACTCATCCAAGGAGACAAATATCCTCCGAAAAC-ACCACTAACTGTTTTGTA
CAGATTGTAGGGGAGAAAAGTTGGACCGATAAAATTTCGGTTTTGAATCAGAGATTTTAGATGGGCGTATGTAATACAAC
ACTGAATGTCTGAAATTAAATTGGGCATTCCGGTACAGTACTTGCACCTCTGACTGCTGAAGATGTTGGTTAAATATGCA
TATATTATGTGAATTACTTGTCCACGACACAAGTTACATGATGTTATCATCATCCATCATAAAATGCATGCTTTTGATTG
GACTTAGCGCAAATCGCTCATGTGAATATCATAATTTCTTCTATGGATTCTCAAGCCTCAGATACAGACA-TGGCTTACT
GGGCATCTCCAAACATTGACGTTAAACAGACA--CTCACATATGTCTGTGGACATCTAACCTGGCGAACACCATCAAACA
CTATCCTTTGAACCTTTTCCAGTTAAAACAAATTCAAAGTCACAATTTTGAAAAAAAATAGACTAGCTCGATATATTACA
TTGAAATTTAACTAGTTCAGTATAAACTACTCAAA---------------------------------------------
-------------------------------------------------------------
>chr2D_275
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--------------------------------------AGGCGGTGTACGTTATGGGATGCCTAGACCGGATGGTCTTAA
GGCCACTGGATTAGATTGTGTCTGTTATATGGACATGACACATATGTATACTTGTAGGTGTAGCAACTTTGTTTTGCTTA
GAAAGTGGCTCTGGGTTGATCCTTGTATTT-ATTTGTCAGGCTCTGATGAATAATTAATAAAGATGATTGTGTGCATCAT
GTTGATGCAGAGGCCGAGGTAATCCTCCTTCTTGAAACCAAAAAAAATCTGTTTTTTCTTACCCATACACACACTTCATA
TATTACTTGGGT----------------------GAGATTAAACCTTAAAATAGCTAGCATCCTCTTGGCCTATGCCAAA
TTTGTCTACGACCTGTAAGTAGTCAAGCCGAGTGGCACGGGTGGCCTATGGTTAGTAACAACCATCCGGCATGGTTAGCA
TTTAGAGTTTGTAAAAGAGGCATCTCGATCAATGAAACGGGGTTATACTTCTATTTTTGGGTTGTTGTTCCTCCTCTCGC
CTCCTTCATATGAGAGGACCATCACCTCCCTTTCTCGTCTTCCCAACATTCCCGCTCTCCTTCCTCCTGCCGCAGCTGTC
GTGATTCGGCAGCTGCTGGGAGCCAACTCGGCAATCCGCCATCCATTCGGAGGAGGGAAGGCAACGTTAGCCGCGGCGCA
TTCGATAGCCAACACACATTACACCGTTACAGAAAAATCATTGCACAAACAATGGCCAACAGCTGCAGAGAACACAAGCG
CGGCGTTCCACGTCCCCCACCATTGTCACTCTTCATCGGTAGGGAGCAAGAGCCAGCGGTCGCGCGGACACACCCGGCTG
CTGCCGACAACAGCAACAAGAAGAGGATGTTGTCCAAGCAGCTGTCCATGAAGGAGACCACCCGAGAGGTCAAGTGGGAG
AAGCGGCGGCGACAGATACAACGGCAAAGGAGTAGCATGGGCCTGTACGACGCCGACCGTGTGGGATGCGCTAACACGCA
CGCCACTTCGAACGGTGTGACCGACGAGGACCTGGATGAGCTCAAGGGATCCATGGAGCTTGGCTTCGGGTTCAACGAGG
AGAACGGAGGCCAGAACCTCTGCGACACGCTCCCCGCCCTCGACCTGTATTTCGCTGTCAACCGGCAGCTGTCCGAGCCG
AAGATGCGGGCGTGCAGTCGCTCGTTGCCTTCCCTTTCTGTGGTGACCTCCTCATCATCCATGCACTCCGGCACGCCGAG
CCCGGCCGGCAGTCCTACCGCTCAGCCCTCCCTCCTTGACTCGTTGAAAATTAGCAGTCCAGGTCAGTAACGTCGTACGT
TTCCTTTGTTAATTTCTTCCTATTATAGATTCCGAAAGAACCATCAGCTTATGTTATTATGTGGTCGGTTGTTTGGTCCT
CTGACTCATGCAGCAGGCGAGAACCCACAGCTTATCAAGACAAGGCTAAGGCAGTGGGCTCAGGTAGTGGCTTGTTCAGT
GAAGCACTCTAGCTGAGAGCGCTGGCTGCAATGAACCACCCATCCCGCAGAACCGTTGTACATCCGAGTGTTCCATTAGA
CGATGATGGAGAGGACATGACCGGTGGTGCAATTAACACAACGTCGTAACCTTGTTGCTCTGGTGACGCCCATGGTTGTT
GTGCATAGTTTAGTCTGTATGTATGTGTTGGCAACATTAATGCACCGCCCCCTATATTGACAGGACAACATTTGATGCAA
GGATGTTCTTCTTGTTCACCAACTTCTTTAGAAACACTAACTCTTGCTGAAACATTTCCATAAAA-AACTAGGCATGCAC
ACTGGCAAGATATATTCGACTAAAACACACTCATCCAAGGAGACAAATATCCTCCGAAAACCACCACTAACTGTTTTGTA
CAGATTGTAGGGGAGAAAAGTTGGGCCGATAAAATTTCAGTTTTGAATCAGAGATTTTAGATGGGCATATGTAATACAAC
ACTGAATGTCTGAAATTAAATTGGGCGTTCCGCTATAGTACTTGCACCTCTGACCGTTGAAGATGTTGCTTAAATATGCA
TATATTGTGTGAATTACTTGTCCACGACACAAGTTACATGATGTTATCATCATCCATCATAAAATGCATGCTTTTGATTG
GACTTAGCGCAAATCACTCATGTGGATATCACAATTTCTTCTATGGATTCTCAAGCCTCAGATACAAAATGTGTCTTATT
GGGCATCTCCAAACGTTGATGTTAAACAAACA--CT--CATATGTCTGTGGACATCTGGCCGGGAGGACACCATCAAACA
CTATCCTTTGAACCTTTTCCAGTTCAAACAT-TTCAAAGTCACAATTTTGACAAAATTTAGACTAGTTCGATATATTACA
TTCAAATTTAACTAGTTCCATATAAACTACTCAAA---------------------------------------------
-------------------------------------------------------------
>SNPs
--------S----S-------S---------S-----------S-S-------------------S---S---S------
---------SS----------S-S---S-----S--------S--S-------S---------S------S---S-----
S-S--------S-----------------S-S------S------S----------S--------S-------S-S----
---S---------S--SS--------S-----S---SS------------------------------------------
--S--S----------------------S------S-----------------S--------------------S-----
------------------------S-----S----------S--------------------------------------
-------S-S---------S----S-------------S------SSS-----------------------S--------
--------S-------------------S---------------------------------------------------
---------SS-------------------------------------S-------------------------------
----------S-------------S--------------S----------------------------------------
----------------------------------------------------S---------------------------
-----------------------------------------------------------------------S--S--S--
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S-----------------------------------S-S-------------------------S---------------
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--------------------------------------------------S-------------------------S---
---------------------S--------------------S-------------------------------------
-------------------S--S--------------------S--------------------S-----S--S-----S
--------------------------------------------------------------------------S-----
------------------------------------------S------------------------------S---S--
-------------------------------SSS---------S------------------------S-S---------
S-------------------------S-----------------------------------------------------
-------------------------S---------------------------------------S--------------
----------------------S---------------------------------------------------------
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----S------------------------------------------------------------S--------------
-------------------------------------------------------S-------S----------------
-------------------------------------S------------------------------------------
-------------------------------SS----------------------------------S------------
--SSS-------------------------------S-----------------------S-------------------
------S--------S----------------------------------------------------------------
--------------------------------SS-----------S-----------------------------S----
-------------------S----------------------------S------------S------------------
-----------------S-----------------SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
>forward_952
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----------------------------------------------------GAGGGAAGGCAACGTTAGCT--------
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>reverse_2742
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---------------------CTTCGAGGCCACTAGGATCG--------------------
