>input_sequence_69417
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--------------------------------------------------------------------------CCGAAA
CCGCGAGCGCCAGCGGGATCCATCGCAGGTTCGCAACCGAACGGACGGAGGGA--------------------------C
GGCGCACACATGGGCATGGCCGGCGACGACTGGCGCTGCCGGAAGCACCCGCCCGTGCCCTGCGGCGGCGTGTGCCCGCA
CTGCCTCTGCGACCGCCTCCTCCGCCTCTGCCCCGACTGCGCGCGGACGCGCCCCTGCGCCTGCGCCTCCCCCTCCTCCC
CGTCCTCCTCGGCCTCCTCCGCCTCCGTCGGCCGCGTCTGCAGCCTCATCGAGCGGGAGCGCCGGATCGGGCGCTCGCGG
TCCGTGGCCGGCGGCGGCAGCGCCGACGAGAGGCGCCGGTCCAGGGTCTGGGGCTGGGCCTCGTTCCGGAAGCCCGCGGC
CGGCAAGGGCATGGAGCTGGAGAGCGAGGAGGAGCGCCACGCCGCCGAGGACGCGGCGGCATTGGAGTTGGAGCGGTCGA
GCTCCGCCTCCGCGGAGAAGCTGGCGCCCAAAACGGGCGGGTGGGGGCGGTTCCTGCCCGGCCCGATCAAGGCGCTGCGC
CACCGCAAGTCGCGCGCTTCCGCCGGCGCCAGCGCCCGAGGCGACCGCCGGGAGGGCGTGAGGTGAGGTGAGATCGCCGG
CCGGCGCGCGGCTAGGTCGTCTTCTTTCCGTGACTGTTGTGATGATCCATGGATCTCGTTGGTTGGTGATCCTGTAACCC
CGAGTCGTCCCGGCCCCTTCCTTCGGGCCTCGCCCGTGATTATACATAATAAAGTTGTGCATAGAAT-------------
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>chr2A_1_TraesCS2A01G448200
AAACCATATATCTAATTGCCATTGTATGTACGATGACAATCTGACCTCAAGATGTATGACCTCACTCTGTTGTGTCACGT
GGAGCATCCAACACATCATCATCTTCCCTTATGGTTGACAACCGCACCAAAAACACGGCACGGCCAAGGCCACCGTTTTG
GTGAGTGTTGGTTGGCTCAAGGATAATTTTGGTGAGCTACTTGTTGATGGCATGATTTGATTTTCCGTGTTGGCGGTTTT
CTCGTAGCTGCCGTTGGAGCTCCATCTTGTAATCTTCTGAGTTTC-CCCATGTCGTCTCCGGGCATTGCGTTTGCCTTGG
CAACATCGATCATCTGTAAGGGTTGTCTTCTATTTGCTTATCACATAACTGGTGTTGCATCATTCAACCACTGATATATC
TACCTTGGTGGTTGATCTATGTGTTGTGTGGTAACCATGTGCTTTATATTTTGCGTTTTATGTGTTTCTTGCTTCGATGA
GATGTATTTCCCCTCAAGGTCATTAAAATTTTAATCCAACCTTCCACGTAAACTGGATCATGATTTCCAATACGGTTTCC
CGCATAAGCCAACTCAATTTCTTTTGAATCGAGATCAATTTACAGGTGCGCCCCTCTCTCGGGTGACTGACCGAAAGAGT
GAAGACGTGAAACCATACATCACATCACCATTTTACATACCGCGACAATCTAAGCTCAAGATGTCCGACCTCACTCTGTC
GTGCCACATGTAGCATCCAGCGCATCATCATACCCCCCTGCAATGGTTTTTTTTTTTTTTTTTGAAGGGCCCTGCAATGG
TTGTTGGCAAGATGGAAAACACGCCA----AAAACCGGTGCGGTGCCCCTTGGATCTCCAAGAACCGCATCAAAACGCCG
TTCACCGGAGAAAGTCCGTGGGCCGGCCCTGG------------CCCCGCTTATATGAGAGACGGACCCTCTGCTTCCCC
GCGTCCCTAGAGCCAAGCCAACCAACGAACGCCGCAACTCGCTCCCCG-----------------CCTCTCCCTCCGAAA
CCGCGAGCGCCAGCGGGATCCATCGCAGGTTCGCAACCGAACGGACGGAGGGA--------------------------C
GGCGCACACATGGGCATGGCCGGCGACGACTGGCGCTGCCGGAAGCACCCGCCCGTGCCCTGCGGCGGCGTGTGCCCGCA
CTGCCTCTGCGACCGCCTCCTCCGCCTCTGCCCCGACTGCGCGCGGACGCGCCCCTGCGCCTGCGCCTCCCCCTCCTCCC
CGTCCTCCTCGGCCTCCTCCGCCTCCGTCGGCCGCGTCTGCAGCCTCATCGAGCGGGAGCGCCGGATCGGGCGCTCGCGG
TCCGTGGCCGGCGGCGGCAGCGCCGACGAGAGGCGCCGGTCCAGGGTCTGGGGCTGGGCCTCGTTCCGGAAGCCCGCGGC
CGGCAAGGGCATGGAGCTGGAGAGCGAGGAGGAGCGCCACGCCGCCGAGGACGCGGCGGCATTGGAGTTGGAGCGGTCGA
GCTCCGCCTCCGCGGAGAAGCTGGCGCCCAAAACGGGCGGGTGGGGGCGGTTCCTGCCCGGCCCGATCAAGGCGCTGCGC
CACCGCAAGTCGCGCGCTTCCGCCGGCGCCAGCGCCCGAGGCGACCGCCGGGAGGGCGTGAGGTGAGGTGAGATCGCCGG
CCGGCGCGCGGCTAGGTCGTCTTCTTTCCGTGACTGTTGTGATGATCCATGGATCTCGTTGGTTGGTGATCCTGTAACCC
CGAGTCGTCCCGGCCCCTTCCTTCGGGCCTCGCCCGTGATTATACATAATAAAGTTGTGCATAGAATGTGTTAGCTGGTG
ATCCAATCCCGTTCTTCCCCAGCCTTGGAAATGGGGTTCCAC------AGTTCATTCTGGCTCAGGTTCAGCAATGGCGA
TCGATTTCTTAACTGATCTGTGCGAGGTTT--------------------------------------------------
------------------CGAGGAGAATGCGTCCTGTAGCCGGCGTCGCCGCGGCAGCGTCTCTGGGCCGTCCTTTGCCA
ACAGTTTTGGCTGTTTGCGCGGGTTTCTGCATGCCGCCGTTCCGTCCGCGCCATCACCATGGCGGCAGAGCACGGCGCGC
ACGCCACCGCCTCGTCATTTTCCGCTTGGGAAGGACCGATGGCGCTAGCCGAAT----GTGCGTGCGTGCCGATGGAGAC
GTCTCGCGAAGCTCTCTCTGTCTTGTGCACGTCCGCCGCGCGAAGCCGTTGTCCCGTTGGATGCCGACATGCGCGCCATG
CCGTCGCGTGTCGCGCCCCGGGCGTGCCGACGTGGTCTGCTGGGACGGGTGGACATGGCCGGCCG-------GTGATCT-
-GATATCTGC-----TGGCGGTGGCGTCGATAC------------------------------------------GCTCT
GTTTCGACCGCTTCCGTGTGTGTGTGCGCGCGCGCACGGACGGACGGACTGCACGAGGCTGGGCCAGACGTGCTGGCATG
CAGCGAAAGTACTCCGTGGTGACGTCCGGCCTGCATGCGTTCATGGTGACCACTCGTGCGCAGCGCACGCATGCTGATGC
TCGCCCGTACCACGTCGTGAGCAGGCGGCCAGGCACCCCACACGCATGTACA-----------------------TTCCA
GAGCGTCGATCAGCGTGTGAAAACAAGCAAGCCTGCTGCATGGGTCGAGCGATCT-----GTGCGTGCGCGTGCATGTCC
TCCTATGCCAGGGCCCAGGGACGCTCGGATGGGCTCTGCATCTGCATCACTGAATGCGTCCCCTGTCTAAGCTGGCGCGC
GTACAGTA----GGAACGCCATAGAACAAAGTTTGCGTTTCTTCCTACACCACACGCCGTGACATTCATTGCTCTTTTTT
TTGGACAAATATTCATTGCTCTTAAACAGCCAT
>chr2D_118
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-------------------------------------ACAACCGCACCAAAC-CACGGCATGGCTAAGGCCACCGTTTCG
GGGAGTGTTGGTTGGCTCGGTATTGTTTTGGTGCAACTACTTGTCGAAGGCATGATTCGGTTTTCCATGCTGGTGGTTTT
GTTGCAGCTGCCGTTGGAGCTCCATCTTGTGATCTTCCGAGTTTCCCCCATGTCGCCTCTAGGCATTTTGTTTGCCTCGG
TAGCATCCATCTTTTGCTAGTGTTGTCTTCTATGCGCTTATCGCAAAAGCGGTGTTGCATCATCCAACCATCGATATATC
TATCTTGGTGGTTGATCTATGTGTTGTGTGGTAACCATATACTTTTTATTTTGCGTTTTATGAATTTCTTGCTTCGATGA
GATGTATCGCCTCTCAAGTTGTTAATGTTGTTAATCCGACTTTCAACATAAACTCGATTATGATTT-CAATAAGGTCTCC
GGCACAAGCCAACCCAATTTCGTCTGAATTGAGATCAATATACAGGTGCCGACCCC-CTCGGGTGACCGACTGAAACAGT
GAAAATGTGAAACCATACATCCGATCACCATTTTACATACCACGACAATTCGAGCTCGAGATA-----------------
----------TAGCGTCCAGCGCATCATCTTATCC----------------------------------CCCTGCAATGG
TTGTTGGCAAGATGGAAAACCCACCGGAAGAAAACCGGTGCGGTGC----------------------ACCAAAACGCCG
TTCACCGGAGAAACTCCGTGGGCCCC----GG------------CCCCGCTTATAAGAGAGACGCACCCTCTGCTTCCCC
GCGTCTCTAGAGCCGAGCCAACGAACGAACGCCGCAACTCCCTCCCTCTCTCCGTAAAAAAACTCCCTCTCCCTCCGAAA
CCGCGAGCGCCAGCGGGATCCACCGCAA--------CCGAACGGACGGACGGACGGACGGCGCGGAGGGATCGACCGGTC
GGCGCACACATGGGCATGCCCGGCGACGACTCGCGCTGCCGGAAGCACCCGCCAGCGCCCTGCGGCGGCGTGTGCCCGCA
CTGCCTCTGCGACCGCCTCCTCCGCCTCTGCCCCGACTGCGCGCGGACGCGCCCCTGCCCCTGCGCCTCCCCCTCCTCCC
CCTCATCCTCGGCGTCCTCCGCCTCCGTTGGCCGGGTCTGCAGCCTCATCGAGCGGGAGCGCCGGATCGGGCGCTCGCGG
TCCGTGGCCGGCGGCGTCGGTGCCGACGAGCGGCGCCGGTCCAGGGTCTGGGGCTGGGCCTCGTTCCGGAAGCCGGCGGC
CGGCAGGAGCATGGAGTTGGAGAGCGAGGAGGAGCGCCGCGCCGCCGAGGACGCGGCGGCA------TTGGAGCGGTCGA
GCTCCGCCTCCGCGGAGAAGCTGGCGCCCAAAACGGGCGGGTGGGGGCGGTTCCTTCCCGGCCCGATCAAGGCGCTGCGC
CACCGCAAGTCGCGCGCTTCAGCCGGCGCCAGCGCCCGAGGCGATCGCCGGGAGGGT-----GTGAGGTGAGATCGCCGG
CCGGCGCGCGGCTAGGTTGTCTTCTTTCCGTGCCTGTTGTGATGATCCATGGATCTCGTTGGTTGGTGATCCTGTAACCC
TGAGTCGTCCCGGCCCCTTC----GGGTCTCGCCCGTGATTATACATAATAAAGTTGTGCATAGAATGTGTTAGC---TG
ATCCAATCCCATTCTTCCCCAGCCATGGAAATGGGGCTCCACATCCACAGCTCTTTCTGGTTCG------GCAATGGCGA
TCGATTTCTCAACTGATCTGGGCGACGTTTCAATCTCCATAGATATATCGTAATCCCAGTGACGCATCTCGTGGCATGTA
CGGCCCGGCGCGCCGCTGCGAGGAGAATGTGTCCTGTAGCCGGCGTCACCGCGCCAGCGTCTCAGGACCGTCCTTTGCCA
ACAGTTTTGGCTGTTTCCGCGGGCTTCTGCATGCCGCCGTCCCGTCCGCGCCAT------GGCGGCAGAGCACGGCGCGC
ACGCCACCGCCTCGTCATTTTCCGCTTGGGAAAGACCGATGGCGCTAGCCGAAT----GTGCGTGCGTGCCGATGGAGAC
GTCTCGCGAAGCTCTCTCTGTCTTGTGCACGTCCGCCGCGCAAAGCCGCTGTCCCGTTCGATGCCTACATGCGCGCCATG
CCGTCGCGTGTCGCGCCCCTGGCGTGCCGTCGTGGGCCGCTGGGACGGGTGGGCATGGCCGGCCG-------GTGATCTG
AGATATCTGC-----TGGCGGTGGCGTGGATACGTTCGAAGAGACGT-------------------CATGCGGCTGCTCT
GTTTCGACCGCTTCCGTGTGTGTGTGCGCGAGCGCA----CGGACGGACTGCACGAGGCTGGGCCACACGTGCTGGCATG
CAGCGAAAGTACTCCGTGGTGACGTCCGCTCTGCATGCACCCGTGGTGACCACTCGTGCGCAGCGCACGCATGCTGATGG
CCGCCCGTACCACGTCGTGAGCGGGCGGCCAGGCGCCCCACACGCATCTACAGTCGCACGCTACACTGTGTTCCAGAGGG
TG--GTCGATCAGCGTGTGAAAACAAGCAAGCCTGCTGCACCGGTCCAGCGGATCTGTGCGTGCGTGCGTGTGCGTGTCG
TCCTATGCCAGG-------GACGGTCGGATGGGCTCTGCATCTGCATCACTGAATGCGTACCCTGTCTAAATTGGCGCGC
GTACAGTA----GGGACGCCATAGAACGAAGTTTGCGTTTCTTCCTACACCACACGCCGTGATATTCAT-----------
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>chr2B_789
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---------------------------------------------------------------------CCCTGCGATGG
TTGTTGGCAAGATGGAGAACACATC----GAAAACCGGTGCGGTGCCCCTTGGATCTCCAAGAACCGCACCAAAACGCCG
TTCACCGGAGGAAGTCCGTGGGCCCT----GGGCCCGGCCCCGGCCCCGCTTATAAGAGAGACGGACCCTCTGCTTCCCC
GCGTCCCTAGAGCCGAGCCAACGAACGAACGCCGCAACTCCCTCCACCCCC---TAAAAAAACTCCCTCTCCCTCCGAAA
CCGCGAGCGCCAGCGGGATCCATCGCAG--------CCCAACGGACGGACGGACGG----CGCGGAGGGATCGGTCCATC
GGCGCACACATGGGCATGCCCGGCGACGACTCGCGCTGCCGGAAGCACCCGCCCGTGCCCTGCGGCGGCGTGTGCCCGCA
CTGCCTCTGCGACCGCCTCCTCCGCCTCTGCCCCGACTGCGCGCGCACGCGCCCCTGCGCCTGCGCCTCCCCCTCCTCCC
CGTCCTCCTCGGCGTCCTCCGCCTCCGTCGGCCGGGTCTGCAGCCTCATCGAGCGGGAGCGCCGGATCGGGCGCTCGCGG
TCCGTGGCCGGCGGCATCGGCGCCGACGAGAGGCGCCGGTCCAGGGTCTGGGGCTGGGCCTCGTTCCGGAAGCCTGCGGT
CGGCAAGGGAATGGAGTTGGAGAGCGAGGAGGAGCGCCACGTCGCCGAGGACGCGGCGGCA------TTGGAGCGGTCGA
GCTCCGCCTCCGCGGAGAAGTTGGCGCCCAAAACGGGAGGGTGGGGGCGGTTCCTCCCCGGCCCGATCAAGGCGCTGCGC
CACCGCAAGTCGCGCGCTTCCGCCGGCGCCAGCGCCCGAGGCGATCGCCGGGAGGGC-----GTGAGGTGAGATCGCCGG
CCGGCGCGCGGCTAGGTTGTTTTCTTTCCGTGCCTGTTGTGATGATCCATGGATCTCGTTGGTTGGTGATCCTGTAACCC
TGAGTCGTCCCGGCCCCTTC----GGGTCTCGCCCGTGATTATACATAATAAAGTTGTGAATAGAATGTGTTAGCTGATC
--CCAATCCCATTCCCCCCGAGCCTTGGAAATGGGGTTCCACATCCACAGTTCTTTCTGGTTCG------GCAATGGTGA
TCGGTTTCTCGATTGATTTGTGCGACGTTTCAATCTGCATAGATGTATCCTGTAGAAGAGA-----------------TA
CGCGCGGGCGCGGCGCG----------TGTGCCCTGTAGCCGGCGTCACCGCGCCAGCGTCTCTGAGCCGTCCTTTGCCA
ACAGTTTTGGCTGTTTGCGCGGGTTTCTGCATGCCGCCGTTCCGTCCGCACCAT------GGCGGCAGAGCACGGCGCGC
ACGCCACCGCCTCGTCATTTTCCGCTTGGGACGGGTCGAAGGCGCCAGCCGAATGTGCGTGCGTCCGTGGCGATGGAGAC
GTCTCGCGAAGCTCTCTCTGTCTTGTGCACGTCCGCCGCGCAAAGCCGCTGTCCCGTTCGATGCCGACATGCGCGCCATG
CCGTCGCGTGTCGCCAGGGGCGCGAGCCGTCGTGGGCCGCTGGGACGGGTGGGCATGGCCGGCCGGTGCACGGTGATCT-
-GATCTCTGCTGGCGTGGCAGTAGCGTCGATACGTTCGAAGACGACGAAGAGACGTGAGCAGCGCGCATGCGGCTGCTCT
GTTTCGACCGCTTCCGTGTGTATGCGCTCGCG--------CGGACGGACTGCACGAGGCTGGGCCACACGTGCTGGCATG
CAGCGAAAGTACTCCGTGGTGACGTCCGCTCTGCATGCGTTCATGGTGACCACTCGTGCGCAGCGGACGCATGGTGATGG
CCGCTCGTACCACGTCGTGAGCAGGCGAGCAGGCACCCCACACGCATGTACAATTGCACGCTACACGGTGTTCCATTCCA
GAGCGTCGATCAGCGTGTGAAAACAAGCAATCCTGCTGCATCGGTCGAGCCATCT-----GTGCGTGCGTGTGCATGTCG
TCCTATGCCAGG-------GACGGTCGGATGGGCTCTGCATCTGCATCACTGAATGCGTCCCCTGTCCAAATTGGCGCGC
GTACAGTAAGTGGGAACGCCGTAGAACAAAGTTTGCGTTTCTTCC-----------------------------------
---------------------------------
>SNPs
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS--------------SS-------S---S-------------S-
-S----------------SSSSS-SS---S-SSS-S--------S--S---------S-S------S--S---S------
S-S-S-------------------------S------S-----------------S---SS------SS--------S--
S-S----S---S-S--SS--S------------SS-------S--S--SS-------------S------SS--------
--S-----------------------------------S-S----S----------------SS----------------
-------SS--S------S-SS-S-SSS-S-------S--S---S--S------S---S-------S-----S---S---
S---S--------S-------S-S-----S---------S---------SSS--S-S----------S---S----S---
---S-S---------------SS------------------S-------SSS-----S----SSSSSSSSSSSSSSSSSS
SSSSSSSSSS----S--------------S--S--SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS-----------
----------------------S--S-------------------------------------------S----------
------------------------SSSSSS-------------------------S------------------------
--------------S-------S-----------------S------S--------------------------------
----------------------------SSSSSSSS-------------S------------------------------
------------------S------------S------------------------------------------------
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-------------S--------------------S---------------------------------------------
----------------S-S-------------------------------------------------------S-----
----------------S--------------------------------------------SSSSSS-------------
-------------------------------------------------------S------------------------
--------------------------------------------S------------SSSSS------------------
-----------------S--------------S-----------------------------------------------
S-------------------SSSS---S-------------------------------------------------S--
----------S------------------------------------------S------S--SSSSSSS----------
---------S---------------S------------------------------------------------------
-----------------------------S-----------------S-----S--------------------------
------------------------------------------------------SSSSSS--------------------
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-----------------------------------------S------S---------S---------------------
-----------------------------S-----S-S--------------S---------------------------
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------------------------------------SSSS--------------------------S-------------
----------------------------SS-------------------------------------------------S
S-------------------------------------------------------------------------------
-----------------------------------------S---------------------------S---------S
------------SSSSSSS----S----------------------------------------------SS--------
--------------------------------------------------------------S------SSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
>forward_729
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---------------------------------------------------------------------CTCACTCTGTC
GTGCCACAT-----------------------------------------------------------------------
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>reverse_1851
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----------GTTCTTCCCCAGCCTTGGAA--------------------------------------------------
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