>input_sequence_69389
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
---------------------------------------------ATGGCGGAGAGGGCGCTCCCGCCGCCCGTGCCCGA
GCAGGCCTCCGCCGCCGCCGC---------CCAGCTCAGGGCGCCGCCGCACGAGACCTACGTCGTCAAGGTCCAGAAGG
ACCAGATATACCGCGTGCCGCCCCCCGAGAACGCCTACCTCGCCGAGCGGTACCGCGCGGAGCGCGCCGGCGGCGGCAAG
AGCGGCGGCGGCTCGGCGTGCTCGACGCCCCTCCTGCTCACGCTCGGCCTGGCGGCCGCGGCGGTGCTGCTCCTGGGCGC
CAGCGTCTGGCTCTCCGTCGTCGTGATGCGGCCGGCCCCGCCGAGCTTCTCCGTGAACAGGCTCTCCGCGCGCAACGCGT
CGGCGCAGCGCCACGCGGAGGTGGACTACGACTTCTTCCTCACGGCGATCAACCCCAACAAGGTGACCGCGCTGTGGTAC
AAGGACGGGGGCACGGCCAGGCTGCTGCACCAGGGCACGGCCCTGGCCAAGGCCGCGGACGTGGGGACGCCCGAGGACGG
CGGCGCGGACGCCAAGGACTTCAACGTGCTGCTGC---GCGGCGGCGGCCACGCGACACCCAAGGCGGTGGAGAGGGCGC
TCAGGGGGTCGAAGAAGGAGGCCGTGGCGCTGGAGCTCGCCGTGGAGTTCCCCGTGCAGGTGCACGTGGGCGCGCTCGCG
TTCGCGGCCAAGAGGCTGGCCGTGGCGTGCGAGATGAGAACGGCGGGGCTAGGGAAGCACGTGCACATTTCGTCGCAGAA
GTGCAGGAGCAGCTTCGGGAAGTGA-------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
------------------------------------------------------------------------------
>chr4D_1_TraesCS4D01G305300
AGACGCGAGGAGTAGAAGGTGTAGGGAAAGCGAGGAAGAGAAGAACGACAATTATCCCTTCTAGCATATGTGGGATGGAG
GTGGAGCTTATTGGCGACTAGGAATACGTTCATGTTGCCACTCTCCTCCAATGTCAATGTGCATTTGCAAAGTTGAATGG
ACGTTTGAGAATGCTATCTATAGTTATTTGTTGCTTTGTGTCAATAGTATGTTGTTAGTTTAACCCACTATATTATATTG
TAAACATGAAAAATTTCATCCTTATTGCAATGCACGACGACGATGAGGTCGACATCATCTGGTTCTAAAGGAGGTGGCTC
CAGCGAGAAATGTCCCGCTACGGCAAGAAGCCGATCAGGAATGGGAGGTTCCGACAGAAAAAGAGAAGGTGCGTCATTAG
ATGAGGTTTTTTGTGTTGAACCCGAGTGTTACAGATAACACCGCGGATAGCCCGTAGCAACGCACGAGCGTTCTGCTAGT
AAAAAAGTAGAGTGTATCTAGGTCTGATCTAACTACTCCCTCCGTTTCAAAAATAGATGACCCAACCTTATACTAACTTT
AGTACAAAGTTAGTACAAGGTTGGGTCATCTATTTTGGAACGGAGGGAGTATTATCTAAGCGACTCAATCAAACATGACA
ATGAAAGAAAAGTTGAAAAAGACAGCATGAGGCTCTACTAAAATCATGGACATAGAACTTAGATCTCGTCTATATGAGAA
TTTAGCAAATCCGAAAAAGAATACAATCAGTAAG-----GTGCATCCTGGCAGCTGCATCGGCAGAAGCAAGCTGGCCGG
GTGCCACGTCGGGCGCGATGGCGGTTGCGACGAGCCTTGACCGGTGGTGCGTGCCACCAGCCAACAATAGGCATGTCGTC
AAAACCGTGGCGCGCACGGGCGCTCCTCCTGGTTTCCCTCCAAATCGGGCCTCCCGCCCGCCTCATGCGACGTCCTCCGC
CAGCTCCCTCCCGCCCCCTCGCACCTCGCCGTCCTCTTTCCTTCCATGGCGGAGAGGGCGCTCCCGCCGCCCGTGCCCGA
GCAGGCCTCCGCCGCCGCCGC---------CCAGCTCAGGGCGCCGCCGCACGAGACCTACGTCGTCAAGGTCCAGAAGG
ACCAGATATACCGCGTGCCGCCCCCCGAGAACGCCTACCTCGCCGAGCGGTACCGCGCGGAGCGCGCCGGCGGCGGCAAG
AGCGGCGGCGGCTCGGCGTGCTCGACGCCCCTCCTGCTCACGCTCGGCCTGGCGGCCGCGGCGGTGCTGCTCCTGGGCGC
CAGCGTCTGGCTCTCCGTCGTCGTGATGCGGCCGGCCCCGCCGAGCTTCTCCGTGAACAGGCTCTCCGCGCGCAACGCGT
CGGCGCAGCGCCACGCGGAGGTGGACTACGACTTCTTCCTCACGGCGATCAACCCCAACAAGGTGACCGCGCTGTGGTAC
AAGGACGGGGGCACGGCCAGGCTGCTGCACCAGGGCACGGCCCTGGCCAAGGCCGCGGACGTGGGGACGCCCGAGGACGG
CGGCGCGGACGCCAAGGACTTCAACGTGCTGCTGC---GCGGCGGCGGCCACGCGACACCCAAGGCGGTGGAGAGGGCGC
TCAGGGGGTCGAAGAAGGAGGCCGTGGCGCTGGAGCTCGCCGTGGAGTTCCCCGTGCAGGTGCACGTGGGCGCGCTCGCG
TTCGCGGCCAAGAGGCTGGCCGTGGCGTGCGAGATGAGAACGGCGGGGCTAGGGAAGCACGTGCACATTTCGTCGCAGAA
GTGCAGGAGCAGCTTCGGGAAGTGACCGACGCCGACCGCCGCGCGCCG-------GCGCCGGCGCTTTGTGCATATAGTG
GGATCGAGGGCCGAACGGGCAGGGCGACGCGTG----AAGTGTGGACGGTGGGATCGTACGTGTACGTCGCGTGTAAATG
TGTCTTGTAGCTCGTGCTTGATGACTCTCGAGGCTCTTTGTGTGCAAATATGTGTAAGTTGTTACTAACCGGAATCTGGG
ACTCGCTGGACTT--GTGTAATCATGGAAGAATGTTCACGCGTGATACATGTGTTCTATTTTTTCCACATTTACATTCTT
CGGTTTCACGCTAGCTAGCTGCTGTGTACTTTGCTTGAGGCTGATTCAGATCATCTGCAACCGGAACACCCACTCCCTCC
CTCCCTCCCCGAGCAATGCTACACCTACGCAGAGACTCTTACGTACCTTACGTAATTGCTGATCTGGCCGTTTTTAATTA
GTCATTAGTTGGGGGCACGGGCCCACCCTTGAAATCAGGGGGCAGTTCGATTAACGCTTTAGCAAATTACGTAGGTTACG
TAAGTGCTTTTCGTAGGTTTAGCATTTTCGCTCCTTCCCCCACGCTCGGACGGACAGTCCTGCCAACATCTGGATTCAAA
CGATAATGCTCCATATGCTCCATCTACGAACAGGCTACGTAAAGTAACGTAATTTTCCTAACTATAAATCCTCTTCCCCC
TGATTTCAACCGGGATGGCCCCAGCCACTAATCCTCATTCAATTAACTACCTCCACATCAGCCTTTACGTAAAAACCTCA
CGTAAGTTTACGTGGGTCTAGCATTACCCAACAGGACCCCTCAAATCTAACCCATATGCTCGCGCTGTCGGGCACCACTC
GAACACAGTCTATATATGGGGCGGATTTGGGCCTACTTGAACGTGTTCGCCATATCGGATTGACGTACGGGACACACGCA
AAAACGCTTTGGTTCATCAAGGGAGGTCATCAGTTCGGTGGCTGCATTCATGGCGCAGGTCGGTGCACCATTCGAGGG
>chr4B_711
TATATGA-------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
------------------------------------------------------------------------------AA
TTTAGCAAATCCGAAAAAAAAAGTACAACCGTGGGGCGCGTGCATCCTAGCAGCTGCATCAGCAGAAGCAAGCTGGCCGG
GTGCCGCGTGGGGCGCGTTGGCGGTTGCGACGAGCCTTGACCGGTGGTGCGTGCCACCCGCCAACAATAGGCATGTCGTC
AAAACCGTGGCGCGCACGGGCGCTCCTCCTGGTTTCCCTCCAAATCGGGCCCTCCGCCCGCCTCATGCGACGTCCTCCGC
CAGCTCCCTCCCGCCCCCTCGCACCTCGCCGTCCTCATTCCTTCCATGGCGGAGAGGGCGCTGCCGCCGCCCGTGCCCGA
GCAGGCCTCCGCCGCCCTCGCCGCGCCGCGCCAGCTCAGGGCGCCGCCGGACCAGACCTACGTCGTCAAGGTCCAGAAGG
ACCAGATATACCGCGTGCCGCCCCCCGAGAACGCCTACCTCGCCGAGCGGTACCGTGCGGAGCGCGCCGGCGGCGGCAAG
AGCGGCGGCGGCTCGTCGTGCTCGACTACCCTCCTGCTCACGCTCGGCCTGGCGGCCGCCGCGGTGCTGCTCCTGGGCGC
CAGCGTCTGGCTCTCCGTCGTGGTGATGCGGCCGGCCCCGCCGAGCTTCTCCGTGAACAGGCTCTCCGCGCGCAATGCGT
CGGCGCAGCGCCACGCGGAGGTGGACTACGACTTCTTCCTCACGGCGATCAACCCCAACAAGGTGACCGCGCTGTGGTAC
AAGGACGGGGGCACGGCCAGGCTGCTGCACCAGGGCACGGCCCTGGCCAAGGCTGCGGACGTGGGGACGCCCGAGGACGG
CGGCGTGGACGCCAAGGACTTCAACGTGCTGCTGC---ACGGCGGCGGCCACGCGACACCCAAGGCGGTGGAGAAGGCGC
TCAGGGGGTCGAAGAAAGAGGCCGTGGCGCTGGAGCTCGCCGTGGAGTTCCCCGTGCAGGTGCACGTGGGCGCACTCGCG
TTCGCGGCCAAGAGGCTGGCCGTGGCGTGCGAGATCAGAACGGCGGGGCTAGGGAAGCACGTGCACATTTCGTCGCAGAA
GTGCAGGAGCAGCTTCGGGAAGTGACCGACGCCGACCGCCGCGCGCCGCGGTGGCGCGCCGGCGCTTTGTGC--ATAGTG
GGATCGAGGGCCGAACGGGCAGGCACGGCGACGTGTCAAGTGTGGATGGTGGGATCGTACGTGTACGTCGCGTGTAAATG
TGTCTTTTAGCTCGTGCTTGATGACTCTCGAGGCTCTTTGTGTGCAAATATGTGTAAGTTGTTACTAACCGGAATCT-GG
ACTTGCTGGACTTGTGTATAATCATGGAAGATTGTTCACTCGTGATACATGTGTCCTA----------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
------------------------------------------------------------------------------
>chr4A_806
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
----------GGGCGCGACGGCCGTTGCGACGAGCCTTGAGCGGTGGTGCGTGCCACCCGCCAACAATAGGCATGTCGCC
AAAACCGTGGCGCGCACGGGCGCTCCCCCCGGTTTCCCTCCAAATCGTGCCCTCCGCCCGCCTCATGCGACGTCCTCCGC
CAGCTCCCTCCCGCCCCCTCGCACCTCGCCGTCCTCTTTCCTTCCATGGCGGAGAGGGCGCTCCCGCCGCCCGTGCCCGA
GCAGGCCTCCGCCGCCCTCGCC---------CAGCTCAGGGCCCCGCCGCACGAGACGTACGTCGTCAAGGTCCAGAAGG
ACCAGATATACCGCGTGCCGCCTCCCGAGAACGCCTACCTCGCCGAGCGGTACCGCGCGGAGCGCGCCGGCGGCGGCAAG
AGCGGCGGCGGCTCCGCGTGCTCCACGCCCCTCCTGCTCACGCTCGCCCTGGCGGCCGCCGCGGTGCTGCTCCTGGGCGC
CAGCGTCTGGCTCTCCGTCGTGGTGATGCGGCCGGCCCCGCCGAGCTTCTCCGTGAACAGGCTCTCCGTGCGCAACGCGT
CGGCGCAGCGCCACGCGGAGGTGGACTACGACTTCTTCCTCACGGCGGTCAACCCCAACAAGGTGACCGCGCTGTGGTAC
AAGGACGGGGGCGCGGCCAGGCTGCTGCACCGGGGCACGGCCCTGGCCAAGGCCGCGGACGTGGGCACGCCAGAGGACGG
CGGCGTGGACGCCAAGGACTTCAGCGTGCTGCTGCGCGGCGGCGGCGGCCACGCGACACCCAAGGCGGTGGAGAAGGCGC
TCGGGGGGTCCAAGAAGGAGGCCGTGGCGCTGGAGCTCGCCGTGGAGTTCCCCGTGCAGGTGCACGTGGGCGCGCTCGCG
TTCGCGGCCAAGAGGCTGGCCGTGGCGTGCGAGATGAGAACGGCGGGGCTAGGGAAGCACGTGCACATTTCGTCGCAGAA
GTGCAGGAGCAGCTTCGGGAAGTGACCGACGCCGACCGCCGCCGCGCCGAG-----------------------------
--------------------------------------------------------------------------------
-----------------------------------------------------GTAAGTTGTTACTAACCGGAATCTGGG
ACTTGCTGGACTTGTGTATAATCATGGAAGATTGTTCGCTCGTGATACATG-----------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
------------------------------------------------------------------------------
>SNPs
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS--
------------------S--SSS-SSSSSSSS---------------S-----------S-------------------
-----S---S------------------------------------------------S---------------------
---------------------------------------------------SS---------------------------
--------------------------------------------------------------------------------
----------------SS--------------------------------------------------------------
--------------------------------------------------------------------------------
-----------------------------------------------------------S--------------------
---------------------S----------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
-----S--------------------------------------------------------------------S-----
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
------------------------------------------------------------------------SS------
-----------------------SSSSSSSSS--------------S---------------------------------
------S-------------------------------------------------------------------------
---S-------------S-------------S-------S--------------S---SSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
>forward_20
AGACGCGAGGAGTAGAAGGT------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
------------------------------------------------------------------------------
>reverse_1887
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
----------------------------------------------CGGTGGGATCGTACGTGTAC--------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
------------------------------------------------------------------------------
