>input_sequence_69379
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------------------------------------------ATGAAACGGCCTCGTCATCAGAAGTTGAAAACGAGATC
CCGACGGAAAGAATGGTCAGATCTCGTGGCCAAGCCACGCAACATGCAGAGCCACCGCCCCGCCCCCGAAGACCACGTCC
GAGAAGAAAGCAGAAGCGCACGAGCCCAACCAACCACCAGGGCGCGCACGGCGGCGACGAGGACAACCGCCAGCCCTGCG
AGACGCTCGGCATTCATGTCCGTCCCCTCCGACTCCGGCCAGGAGACACCGCCCTTGGCGACCGAGGGCGGTCGGGCGCG
CCTCCAGGACGAGCAGCTGGGGCAGCTCCGGGAGCTCTTCCTCCGCTTCGACCTCGACGGCGACGGCAGTCTCACCAAGC
TCGAGATAGCCGCGCTTCTCCGCTCGCTCGGTCTCCGCCCCGCCGCGGGGGACGAGATCCACACCCTCATCGCCTCCATG
GACGTCGACGGCAACGGCACCGTGGAGTTCGACGAGCTAACCTCTTCCCTCTCGCAGCTGCTCCTCGGGCCCGGCCGCTC
CTCCGTCGCCGTTGACCACGAGCAGCTCGCCGAGGCCTTCCGCGCCTTCGACCGCGACGGCAACGGATACATCTCCGCCG
CCGAGCTCGCGCGCTCCATGGCGCAAATGGGGCACCCCATCTGCTACGCGGAGCTCACCGACATGATGCGCGAGGCCGAC
ACCGACGGCGACGGCTCCATTAGCTTTGAGGAGTTCACCGCCATCATGGCCAAGTCCGCCGTCGAATTTCTCGGCCTCGC
CGCGTTGTGA----------------------------------------------------------------------
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>chr3B_1_TraesCS3B01G246100
TGGCTTCCCAAAAATTCTTGTCCATGAAACTCTACAAGTCAATGATGGGGGAGGGCACATCACACAACATCTTCATGATG
ATATGGAAATCTGCCAGCCGTCTCAGGCACAAAATCTTCTTCTGGCTACTACTGCATGACAGAATTAGCACAAGGAATAT
GATTAAACGAAGAAACATGCATATGAAAGACTACAAATGTGCACTATGCGCT-GATGCAACACAGGAAACAATATCACAT
CTTTTCTGGAGCTGCCCATTCACTTGGTTCTGCTGGAGCTCGATCATCTCCCACAGAAGCAAAGGCATCTCCACTTTTGA
TGAAGTGCACCTCTTAAAGGACAGATTACCAGAAAACATTGCGATGGATGATCAGAAATGATAAAATCTTCAGGAGAGCA
CCACCTCAAGTGAGACTCATGGAAATTCTACCTCAAAGGACTCTAGACTACTAAGATTAGAGCTAAGCAGGCTAAGGCAG
AATAGATCAATTCTTGGATAGAACAATACTTGTAATTTAATTTTTCATGTTTGATTGAACTGGTATTGGGTGATCCTTGT
TGGACTAGGTTTGTACATATTTTATATTAATGAAAATACCGTAGAACTATTTTTCTTCGGTTCCGGCTAAAAAAAAGTGA
TGCAAGCACGGGCCTGGCTTCGAGATACGCCCGATTCCTGGGTATCCGCGAGCCTGGCTCGGAGGCCTCTTTTGCATCTG
TCGGGCCAGGCTGACAAGGCCACCCATGCCACCAAACACGCTCGATTCTGCATGTCGGGTGCGAGCCAAGAAATCAAACA
CGCCTCTAGGAGCTATGTACGCGATGGATGAAGACTTACCTTACGTTCGTGTGTATGCTGTCTCCTACGGCCAGTCGATA
GGGCACCAGAACGTGCACATAAGGATAAGGACCTCAGGTTTCGAACTTGCATCTTGCATGCACCCATATATAGAGATAAT
-AAGAGTCTAAAATTAGTGCAGCGAGACAGCAAAGGTGAAAAATGAAACGGCCTCGTCATCAGAAGTTGAAAACGAGATC
CCGACGGAAAGAATGGTCAGATCTCGTGGCCAAGCCACGCAACATGCAGAGCCACCGCCCCGCCCCCGAAGACCACGTCC
GAGAAGAAAGCAGAAGCGCACGAGCCCAACCAACCACCAGGGCGCGCACGGCGGCGACGAGGACAACCGCCAGCCCTGCG
AGACGCTCGGCATTCATGTCCGTCCCCTCCGACTCCGGCCAGGAGACACCGCCCTTGGCGACCGAGGGCGGTCGGGCGCG
CCTCCAGGACGAGCAGCTGGGGCAGCTCCGGGAGCTCTTCCTCCGCTTCGACCTCGACGGCGACGGCAGTCTCACCAAGC
TCGAGATAGCCGCGCTTCTCCGCTCGCTCGGTCTCCGCCCCGCCGCGGGGGACGAGATCCACACCCTCATCGCCTCCATG
GACGTCGACGGCAACGGCACCGTGGAGTTCGACGAGCTAACCTCTTCCCTCTCGCAGCTGCTCCTCGGGCCCGGCCGCTC
CTCCGTCGCCGTTGACCACGAGCAGCTCGCCGAGGCCTTCCGCGCCTTCGACCGCGACGGCAACGGATACATCTCCGCCG
CCGAGCTCGCGCGCTCCATGGCGCAAATGGGGCACCCCATCTGCTACGCGGAGCTCACCGACATGATGCGCGAGGCCGAC
ACCGACGGCGACGGCTCCATTAGCTTTGAGGAGTTCACCGCCATCATGGCCAAGTCCGCCGTCGAATTTCTCGGCCTCGC
CGCGTTGTGAGCGAGGATGAAGGGATTCCTCCGCTCCCTCCGGTTAGAGCCTCGTGGGCTTGTCCTCTGTTTGTAAATTA
GTCCATTCGCCTTTCTTTTTATCATTTCTGCAAATATAATACATACACATTTAAATCGCGTTGTATTGAATGTGTCACTG
TAAATAGATCTAACGTTTTTTTTAGAACGGAGGCACCTGCCTGGCCTTAGAAAGGTCCTTGCAGTTAAGGAGGTGACCGA
CAAGCAGTACTCCCTCCGTCCAGAGTAATTGTGTCGACTTTATACTAATTTTAGAAAAAGTTGTACTAAGAACTTTATAC
TAACTTTAATATAAAATTGTACTAAGCTTAAGACATTTATTTTGAAACGGAAAAAATACTAAATAAACAACAAGATAAAG
ATATTGGGGTACAAGGCCGCAGCCCAAAGACGCGGGGCAGCGCAAAGCCCAGACTAGACACCAAAGATGGCTGATGGCCT
AGCCTAGAATAGATCTAATGTTGCTATAGTGAATATTTGATTTGAAATTCGCATCTAGAAAATAAGAATGCAATTGCTGA
GAAAATAGGAACATGAATTGCCCACATTGCTGTGTAGAAACTTTGATTTTGGAACAAGAATTGTTGTG-TCTTCAGTAGT
AAAATGGTCCCTTTAGGGGTGGATCAATCAATCAGCTGCTC-----------GCTCGTTAAGGTTAAGGAGCAAAAAAGG
TCAT-TTTGCTAGTTTAAAACTTGTTAAGCTTGTAAGCGCCTCGTTAAGAGAGTACGATGTGTTACAGCATGTGGAGTGA
GAGTGCGGGTGTAAATTTTATGTGGGAATATAATGACTATAAAAGAGGTGCGCTAGTTTGCTCCCTTCTGTGGGTTGGG-
TGAGTCGGTTAGATTGATTAGATGGTTTGAGATGCCACAAAATATTATCATCAAAGATAAGAAAATATCGGACGTGATGT
ACTAACAAGCTTAACGAACTGCTCATGAAACTTGTTAGTTTGTTCATTAATACATAAGTTTAAT
>chr4D_1
TGGCTTCCAAAAAATTATCATCCATGAAACTTTACAAATCAATAATGGGAGTGAGTACAGCACACATCATTTTCATGATG
GTAGTGAAATCTGCTTGCCGTCTCAGGCACAAAATCTTCTTCTGGCTCCTACTACATGACAGGTTTAGCTCAAGGATTAT
GATTAAAATAAGAAATATGCATCTGGAAGATTACAACTGTGCTTTTATGTTTAGATAAAATAGAGGAAACCATATCACAC
CTGTTCTGGAACTGTCCTTTCACTTGGTTATGCTGGAGTTCAATCATACCACAAGAAATAG-AGGCATCTCCACTTTTGA
TGAAGTGCACCTCTTGAAAGATAGATTACCACCGGTC-------------------------------------------
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-----------------------------------------------------------------------------ATT
GCGATGGAAATCATTGTCATGGGATGTTGGAGCACATGGATGATCAGAAATCATAAAATCTT------------------
----------CAGGAGAGCACCACCCCATCCAGACTCATGGAAATTCTACCTTAAAGAAG--------------------
------------------------------GACTCCGAATTACCAGGATTAGAG--------------------------
--------------------------------------------------------------------------CAAAGC
AGGCAAAAGCAGAACATATCAGTTCTTGGACAGTACAAAACTTGTTATTTAATTCCCATGTCAGATCATACTGGTGCTGG
GTG-----------------------------------------------------------------------------
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--------------------ATCCTTTCTGGACT----------------------------------------------
---------------TT---------------------------------------------------------------
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----------------------TGTTTTGTGCATATTTTTTATTTAATGAAAATACCGTAGAACTATTGTTCTACGGTTT
CGACTAAAAA----------------------------------------------------------------------
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>chr3A_636
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----------------------------------------------------------------------------GTGA
TGCAAGCGCGAGCCTGGCTCCGAGATACGCCCGGCTCCTGTGTATCCGCGAGCCTGGCTCA-AGGCCTCTTTTGCATCTG
TCGGGCCAGGCTGA------------------------------------------------------------------
------------------------------------------------------------------------------TA
GGGCACCAGAACGTGCACG------TAAGGACCTCAGGTTTCGAACTTGCATCTTGCATGCACCCATATATAGAGATAAT
AAAGAGTCTAAAATTAGTGCAGCGAGACAGCAAAGGTGAAAAATGAAACGGCCTCGTCATCAGAAGTTGAAAACGAGATC
CCGACGGAAAGAATGGTCAGATCTCGTGGCCACGCCACGCAACATGCAGAGCCACCGCCCCGCCACCGAAGACCACGTCC
GAGAAGAAAGCAGAAGCGCACGAGCCCAACCAACCACCAGGGCGCGCGCGGCGGCGACGAGGACAACCGTCACCCCTGCG
AGACGCTCGGCATTCATGTCCGTCCCCTCCGACTCCGGCCAGGAGACACCGCCCTCGGCGACCGAGAGCGGTCGGACGCG
CCTCCAGGACGAGCAGCTGGGGCAGCTCCGGGAGCTCTTCATCCGCTTCGACCTCGACGGCGACGGCAGTCTCACCAAGC
TCGAGATAGCCGCGCTTCTCCGCTCGCTCGGTCTCCGCCCCGCCGAGGGGGACGAGATCCACACCCTCATCGCCTCCATG
GACATCGACGGCAACGGCACCGTGGAGTTCGACGAGCTAACCTCTTCCCTCTCCCAGCTGCTCCTCGGGCCCGGCCGCTC
CTCCGTCGCCGTTGACCACGAGCAGCTAGCCGAGGCCTTCCGCGCCTTCGACCGCGACGGCAACGGATACATCTCCGCCG
CCGAGCTCGCGCGCTCCATGGCGCAAATGGGGCACCCCATCTGCTACGCGGAGCTCAACGACATGATGCGCGAGGCCGAC
ACCGACGGCGACGGCTCCATCAGCTTTGAGGAGTTCGCCGCCATCATGGCCAAGTCCGCCGTCGAATTTCTCGGCCTCGC
CGTGTTGTGAGCGAG-----------------GCTCCCTCCGGTTAGAGCCTCGTGGGCTTGTCCTCTGTTTGTAAATTA
GTCCATTCGCCTTCCTTTTTATCATGTCTGCAAATATAATACATACACATTTGAACCTCGTTGTATTGAATGTGTCAGTG
TAAATAGATCTAATGTT---------------------------------------------------------------
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----------------------GCTATAGTGAATATTTGATTTGGAATTCATATCCAGAAAATATGAATGCAATTGCTGA
GAAAATAGGAACATGAATTGCCCATATTGCTGTGTAGAAACTTCAATTTTGGAATAAGAATTCTTGTGTTCTTCAGTAGT
AAAACGGG-------GGGGTGGATTAACGAGCTGCTTGTTAGTTAAGCTCGTGCTCGTTAAGCTTAACAAGCAAAAAAAG
TCAGCTTTATTAGTTTAAAATTCGTTAAGGTCGTAAGTGA-TCGTTAACAGACTATGATGTGCTACGATCTAC-GAATGT
GGATGAGCGTGTAATTTTTACGAGGGAATATAATGACTACAAAAGAGGTGCGCTAGTTTGCTCT-TTCTATGGGTTGGGA
TGAGTCGTTTAGATTGATTAG-----------------------------------------------------------
----------------------------------------------------------------
>chr3D_941
ACCCCTAG------------------------------------------------------------------------
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--------------------------------------------------------------------TATAGAGATAAT
-AAGAGTCTAAAATTAGTGCAGCGAGACAGCAAAGGTGAAAAATGAAACGGCCTCGCCATCAGAAGTTGAAAACGAGATC
CCGACGGAAAGAATGGTCAGATCTCGTGGCCACGCCACGCAACATGCAGAGCCACCGCCCCGCCCCCGAAGACCACGTCC
GAGAAGAAAGCAGAAGCGCACGAGCCCAACCAACCACCAGGGCGCGCGCGGCGGCGACGAGGACAACCGCCTCGCCTGCG
AGACGCTCGGCATTCATGTCCGTCCCCTCCGACTCCGGCCAGGAGACACCGCGCTCGGCGACCGAGGGCGGTCGGGCGCG
CCTCCAGGACGACCAGCTGGGGCAGCTCCGGGAGCTCTTCCTCCGCTTCGACCTCGACGGCGACGGCAGTCTCACCAAGC
TCGAGATAGCCGCGCTGCTCCGCTCGCTCGGTCTCCGCCCCGCCGAGGGGGACGAGATCCACACACTCATCGCCTCCATG
GACGCCGACGGCAACGGCACCGTGGAGTTCGACGAGCTAACCTCTTCCCTCTCGCAGCTGCTCCTCGGGCCCGGCCGCTC
CTCCGTCGCCGTTGACCACGAGCAGCTAGCCGAGGCCTTCCGCGCCTTCGACCGTGACGGCAACGGATACATCTCCGCCG
CCGAGCTCGCGCGCTCCATGGCGCAAATGGGGCACCCCATCTGCTACGCGGAGCTCAACGACATGATGCGCGAGGCCGAC
ACTGACGGCGACGGCTCCATCAGCTTTGAGGAGTTCACCGCCATCATGGCCAAGTCCGCCGTCGAATTTCTCGGCCTCGC
CGCGTTGTGAGCGAGGATGAAGGGATTCCTCCGCTCCCTCCGGTTAGAGCCTCGTGGGCTTGTCCTCTGTTTGTAAATTA
GTCCATTCGCCTTTCTTTTTATCATTTCTGCAAATATAAGAC--------------------------------------
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>SNPs
--------S-------S-SS-----------S-----S-----S-----S-S-S-S---S------S---S---------
S--SS---------SS-------------------------------S-----S--------SS-----S------S---
-------SS------S------S--S----S-----S-----SS-SSSSSS-----SS--S-S-------S--------S
--S-------S---S--S-----------S--------S--S-----SS-S--SSS--SSSS------------------
---------------S--S--S---------SSSSS-SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS----
-------S--S--------S-------------SS-----S-------------------SS------------------
--------------SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS--
------------------SSSSSSS-------------------------------------------------------
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--------------------------------S-----------------------------------------------
-----------------------------------------------S------------------------S-------
-------------------------------------------------------S------------------------
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---------------------------------------------S----------------------------------
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---------------------------S----------------------------------------------------
---------------------------------------------------------S----------------------
--------------------S-----------------------------------------------------------
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----------------------------------------------------S--S-S-------------------S--
-------------S---SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSS----------------------S-----SS---S--------S---------------
------------------------S------------------SS---------S-------S-----------------
----S--SSSSSSSS---------S--SS-SSSSSS--S-S---------------------S----SS---------S-
---S----SS----------S-S------S-S-----S-SS-------S---S--S------S---SSSS-SSS--S--S
-SS--S-S------S-----S-S----------------S-----------------------SS----S----------
-------S-------------SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
>forward_410
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----------------------------------------------------------------------CAGGAGAGCA
CCACCTCAAG----------------------------------------------------------------------
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>reverse_2007
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------GTACTCCCTCCGTCCAGAGT------------------------------------------------------
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