>input_sequence_69372
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----------------------------------------------------------------ATGGCGAGGGTACACT
CTTCGCCGTCGTTTTCTTCTTCTTCGTCGCCGGCGGCAGCTGCGGCGGCGTGCGCGGGCGAGAGAAGGGGGAAGGTGTTC
ACGCTGTGGCTGAAGTCGCTGGTGCTCAACGGGCGGGGGTGCACCGTGTACGACTCCGACGGCCACATCGTGTACCGCGT
CGACAACTACGGCTCCAAGTGCAGCGACAACGTCTGCCTCATGGACCTCCGCGGCAACATCGTCGTCAACATACACAAGA
AGGTGTGTACATTTTCCTTTGCTGAGAATATCATCAAGATCTATGAAATACTATGTTGGCGCTCAAACGAATGTATGATC
GATCTTTCTGACTGGTTACTTA---ATTGTGGATTCCTGCAGAAGCTCGCGTTTGGCAAGTGGGAAGGGTACAAGTGGAC
CGGCCGGAAGCAAGAGGCGAGCGCATGGTTCAAGGTGGCGCGGCCGCGCGGCGGCATCTTCCACCGGAGCGGCGGCCGCC
CCTCGTCGTCGCCGTGCGAGTTCGAGAGCGACGCCGGCCGTGCCATGCGGTACAGGATCGACGACGACGGCGGGGCGCGC
GCCGGGAAGCGGGCGTGCTGCAGGATCGTGGACGCCGGCACCGGGCTGGTGGTGGCGGAGGTGAAGAGGAAGGTGACGGC
GGGCGGGGTGGCGCTCGGGGAGGACGTGCTCGCCCTGGTGGTGGAGCCCGGCGTCGACGACTCGCTCATCATGGGGCTCG
TGCTCGTCTACGGGCTCATGAATCGCACCATGTGA---------------------------------------------
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>chr2D_1_TraesCS2D01G114400
GCTTTTTCCTTTTCCCGCTTTGGTGACGACGGGCGTGAGTGCTGCCTCCCGCCTGCTACGGCTGACTAGACATCTCGTAC
TGATCTACTTGCATTTTTTAAGCGCTTCTAATCCACATTATTGCCTTTTAAG---TAGTAGTAAAATTGCTGCTGTTGCT
TCGTACCGTCAGCAACTGCAGTTCCGAA-CCCATGCAAAGAGCGACCGGCGAGCATCTCGACGCATGCACTTTTCTTGCT
AC----TTTAAGTCCGATCCTATGAAGTACCAAGGGCCGTTGTAAATGTCAAAATGTGCGTGCCTTTCAGGCATGCATGT
CACTGTCAACGCCTCCGGTTCGAGATTACTAATTAAGCACGGCCATTTTGAGCTAGCTTTGTCTTAGGCTGGCCATAGTG
AGAGTAACATAACTAGTATCATATACTTGGGACTCGTAAACATGCTTACGTGGCAGAAAATTAAAGAAAAGAGAGAGGGT
CCTAGTAACATAGGTAGATACCGTAACATAATAATTGTTATGCTACTATGTGTCATGCATGGCAATAAATGAGACCACCT
ATGATACTACTAGTGTATGTTACTCCCCACTATGACCAGCCTTACGCTGAAATGGTTGGCCTGCTGTTGGTTTCAGTGCT
TG-----GACATGAAAGATAGGGCACGAACCACACGCATGGGGGCAGGGGGCACTGAAACTTGGACACCAATAGACTATT
TGGCTAATTAAAATTGCCGCCACGGCTCGATAAGCATGCATGGCATAAATGTGTTTCAGGGAGTTTTTAATATCTGATTA
--TAACTAACTAATACTCCAAAAAGAGCATCATCCCAACTTGTCCTCCTCTCGATCCAGATAGTTTAAGCGAGCCAGCAA
CCACGTCACCGGCACTTTTGCGCTTTTGCTCTCTCTTCC---TCCTCTGTGTATATATCGAGCCCTAGCCTACTTAACCA
GATCACATAGAGAGACACATTAGCGCGCAGACAGAAAA-----AAAAC-TTTGTACAGGCAGAGATGGCGAGGGTACACT
CTTCGCCGTCGTTTTCTTCTTCTTCGTCGCCGGCGGCAGCTGCGGCGGCGTGCGCGGGCGAGAGAAGGGGGAAGGTGTTC
ACGCTGTGGCTGAAGTCGCTGGTGCTCAACGGGCGGGGGTGCACCGTGTACGACTCCGACGGCCACATCGTGTACCGCGT
CGACAACTACGGCTCCAAGTGCAGCGACAACGTCTGCCTCATGGACCTCCGCGGCAACATCGTCGTCAACATACACAAGA
AGGTGTGTACATTTTCCTTTGCTGAGAATATCATCAAGATCTATGAAATACTATGTTGGCGCTCAAACGAATGTATGATC
GATCTTTCTGACTGGTTACTTA---ATTGTGGATTCCTGCAGAAGCTCGCGTTTGGCAAGTGGGAAGGGTACAAGTGGAC
CGGCCGGAAGCAAGAGGCGAGCGCATGGTTCAAGGTGGCGCGGCCGCGCGGCGGCATCTTCCACCGGAGCGGCGGCCGCC
CCTCGTCGTCGCCGTGCGAGTTCGAGAGCGACGCCGGCCGTGCCATGCGGTACAGGATCGACGACGACGGCGGGGCGCGC
GCCGGGAAGCGGGCGTGCTGCAGGATCGTGGACGCCGGCACCGGGCTGGTGGTGGCGGAGGTGAAGAGGAAGGTGACGGC
GGGCGGGGTGGCGCTCGGGGAGGACGTGCTCGCCCTGGTGGTGGAGCCCGGCGTCGACGACTCGCTCATCATGGGGCTCG
TGCTCGTCTACGGGCTCATGAATCGCACCATGTGAAGCAAAACCAGAACAGAATAGAGACTTTTACAGTCTTTCTTCGTG
TGAATTACCGTGT----AACTGCGAGTAGAACGACTTCCTAGTGTGACACAGATGAC-TGATCTACAAGTGATTTTGATT
CCATGG--------------------------------------------------------------------C-----
-GTTTGTACTGCCAAAAATGTTCAGCGTCGCCTAAGATGTGTTTAACAAAACACACT-TGTTCCCCAGGTTCGATCAGTG
CAAGTTGTTTATTCCCACCCTCTGACTTCAATCGTCGTACGTGAACTCCGTGTAATTAGTCTTTTTTCGAAAACAATAAA
ATTGGAAGTGTTGTTTCGCCTTCCCCGTTGTAGATTCTAACTCTCCACCAGGGCATGCGATTCCGTTTC-GTCAGGTCGC
TGGACAGTTTGACCTAAAGGTAGAAATCACTGAGGAACATACCGGATCCAT----GTCTTGATTAAGGCCTTGTACAATA
CAAGGTGT-----TTATTTGTAAAGAGTAGATGCTTAATTAGGCACCC--TTTACAGAGACAAGCACTAGTGCTTGAGAA
AAACTCAGTTTATTTTACTATAAGCACCTCTTCTAAGCACCATGCACTGTAT------ACAAGACCTAAATGGGTTCACA
CTGGCTGGAACATCAATTAACGAAACTCCGAACTGG--------------------------------------------
-----------------------------------------CATTACAAAACAATTGACTCAAAAAAATTGCCTATAAAT
GAAGAACCAACAGAGCTATTCATTATCTATCTTCTCAGTCGCTTCACTCTAATGCTTCTGCTCTATGTACAGGCTACAAA
TAAGCTACATGAAGTAGCTTAGAGGTGTCTTCTTTCTAGATCCGCCTTCACCATAAAGCTCGTTCCACTGAACAAGCTCG
TTCATATTTGTCGAATCAGATGATATACTTGCACACACCTACACACGAGGCAAGTTACGTTAGGATCACACTTTTATCAA
CAACTTGGAGATGAAAAAACATAAAATGACAATG-GGGTAACCTTAA-TTATTATAGTACTCCCTCCGCCCCAAAGTAAG
TGTCTCAACTTTGTACTAAC
>chr2B_1
GCTTTTTCCTT-TCCCGCTTTGGTGACGACGGGCGTGAGTGCTGCCTCCCGCCTGCTACGGCTGACTAGACATCTCGTAC
TGATCTACTTGCCTTATTTAAGCACTTCTAATCCGCATTATTGCCTACTAAC---TAGAGTAT-------TGCTGTTGCT
TCGTCCCGTCAGCAACTGCAGTTCCAAA-CC-ATGCAAAAGGCGACTGGCTAGCATCTCGACGCATGCACTTTTCTTGCT
ACTACTTTG-AGCCCGATCCTATGAAGTACCAAGGGCCGTTGTAAATGTCGCTGTCATGCTTCTAGTTTGAGGTTATTAG
--------------------------TACTAATTAGGCACGGCTATTTTGAGATGGCTTTGTCTTG--------------
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--------------------------------------------CGCTGAAATGGTTGGCCTGCCGTTGGTTTCAGTGCT
CGTTGGCGAGATGAAAATTAGGGTAGAAAACCGCAC-------GCAGGAAGCACTGGAACTTGGACGCGGATTGACTATT
TGCCTAATTAAAATTGCCGCCACAGCTCGATAAGCATGCATGGCATAAATGTGTTTCAAGGGGTTTTTAAATATCATCTG
ATTAACTAACTAATACTCCAAAAAGAGCATCATCCCAATTTGTCCT-CTCTCGATCCATATAGTTTAAGCGAGCCAGCAA
CCACGTCACCAGCCCTTTTGCGCTTTTGCTCTCT--TCC---TCCTCTGTGTATATATCGAGCCCTAGCTTACTTAACCA
GATCACATAGAGAGACACATTAGCGCGCAGACAGAAAA-----ACTTAATTAGTACGCGCAGAGATGGCGAGGGTACACT
CTTCGCCGTCGTTTCCTTCTTCTTCGTCGCCGGCGGCGGCGGCG------TGCGCGGGCGAGAGAAGCGGGAAGGTGTTC
ACGCTGTGGCTCAAGTCGCTGGTGCTCAACGGGCGGGGGTGCACCGTGTACGACTCCGACGGCCACATCGTCTACCGCGT
CGACAACTACGGCTCCAAGTGCAGCGACAACGTCTGCCTCATGGACCTCCGCGGCAACGTCGTCGTCAACATACACAAGA
AGGTGTGTACAGCGTACTTCTTTTCTATAGCCAAGAAGCTC-----------------------------------GATC
GCGTTTTCTGGCAAGTTTACTTATGATTGTGGGTTCATGCAGAAGCTCGCGTTTGGCAAGTGGGAAGGGTACAAGTGGAC
CGGCCGGAAGCAAGAGGCGAGCGCGTGGTTCAAGGTGGCGCGGCCGCGCAGCGGCATCTTCCACCGGAGCGGCGGCCGCC
CGTCGTCGTCGCCGTGCGAGTTCGAGAGCGACGCCGGCTGCGCCATGCGGTACAGGATCGACGACGACGGCGGGGCGCGC
GCCGGGAAGCGGGCGTGCTGCAGGATCGTGGACGCCGGCACGGGGCTGGTGGTGGCGGAGGTGAAGAGGAAGGTGACGGC
GGGCGGGGTGGCTCTCGGGGAGGACGTGCTCGCCCTGGTGGTGGAGCCCGGCGTCGACGACTCGCTCATCATGGGGCTCG
TGCTCGTCTACGGGCTCATGAATCGCACCATGTGAAGCAAAACCAGAACAGAATAGAGACTTTTATAGTCTTTCTTCGTG
TGAATTACCGTGT----AACTACGAGTAGAACGACATCGTAGTGTGACACAGATGAC-TGATCTACAAGTGATTTTGATT
CCATGTAGTGCGGCACGACATCTCCATCAAACTTGTGATGACTCCGTTAATCTCAAGATTCGCGTATATGCGATCATTTG
GGTTTGTACTGCCAAAAACGTTCAGCGTCGCCTAAGATGGGTATAACAAAACACACTTTGTTCCCCTGGTTCGATCAGTG
CAAGTTGTTTATTCCCACCCGCTGACTTCAATCGTCGTATGTGAACTCCGTGTAACTAGTCTTTTTTCGAAAACAATCAA
ATTGCAAGTGTTGTTTCGCCTTCCCCGTTGTAGATTCTAACTCTCCACCAGGGCATGTGATTCCGTTTCGGTCAGGTCGC
TGGACAG-TTGACCTAAAGGTAGAAACCACTAAGGAACATACCGCATCCAT----GTCTTGATTAAGGCCTTGTA--ATA
CAAGGTGT-----TTATTTGTAAAGAGTAGATGCTTAATTAGACACCCCTTCTACAGAGACAAGCACTAATGCTTGAGAA
AAACTCAGTTTATTTTACTATAAGCACCTCTTCTAAGCACCCTGCACTGTATCTGTATACAAGACCTAAATGGATTCACA
CTGGTCTAAGCACC------CTGAACTGTATTCTGATGCTCAGTCTACATACAGGTTTG------CAAGGAGAATGGTGG
ACCAACCAGGTCCTACGCTATCTGTCGAAACTCCCAACTGACATTACAAAACAATTGACTCAAAAAAATTGCCTATAAAT
GAAGAACCAACAGAGCTATTCATTATCTATCTTCTCAGTCGCTTCACTCTAATGCTTCTGCTCTATGTACAGGCTACACA
TAAGCTACATGAAGTAGCTTAGAGGCGTCTTCTTTCTAGATCCGCCTTCGCCGTAAAGCTCGTTCCACTGAACAAGCTCG
TTCATATTTGTCGAATCAGATGATATACTTGCACATACCTACACACAAGGCAAGTTACGTTAGGATCACACTTTTATCAA
CAACTTGGAGATGAGAAAACATAAAATGACAATGCGGGTAACCTTAATTTATTCTAGTACTCCCTCGTCTCAAAGCAAGT
ACTAAACTT-----------
>chr2A_4
---TTTTCCTT-TTCCGCTTTGGTGACGACGGGCGTGAGTGCTGCCTCCCGCCTGCTACGGCTGACTAGACATCTCGACC
TGATCTACTTGCCTTATTTAAGCACTTCTAATCCGCATTATTGCCTGATAAGTAGTAGAGTAT-------TGCTGTTGCT
TCGTCCCGTCAGCAACTGCAGTTCCAAGCCC-ATGCAAAAAGCGACTGGC-AGCATCTCGACGCATGCACCTTTCTTGCT
ACTACTTTTAAGTCCGATCCTATGAGGTACCAAGGGCCGTTGTGAATGTCAAAATGTGCGTGCCTTTCAGGCATGCATGT
CGCTGTCAACGCCTCCGGTTCGAGTTTACTAATCAAGCACGGCCATTTTGAGCTAGCTTTGTCTTACGCTGAAGA-----
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-----------------------------------------------TGAAATGGTTGGCCTGCTGTTGGTTTCAGTGCT
TG-----GGCATGAAAGATAGGGCACGAACCACACGCAGGGGGGCGGGGGGCACTAGAACTTGGACACGAATAGACTATT
TGCCC------AATTGCCGCCACAGCTCGATAAGCATGCATGGCATAAATGTGTTTCAAGGGGGTTTTAATATCTGG---
-TTAACTAACTAATACTCCAAAAAGAGCATCATCCCAACTTGTCTTCCTCTGGATCCAGATAGTTTAAGCGAGCCAGCAA
CCACGTCACCAGCACTTTTGCGCTTTTGCTCTCT--TCCCCATCCTCTGTGTATATATCGAGCCCTAGCTTACTTGACCA
GATCACATAGAGAGGCACGTCAGTGTGCAGACGGACAGAGGGCAACAC-TTAGTACGGGTAGAGATGGCGAGGGTACACT
CTTCGCCGTCGTTTTCTTCTTCTTCGTCGCCGGCGG---------------------GCGAGGGAAGGGGGAAGGTGTTC
ACGCTGTGGCTCAAGTCGCTGGTGCTCAACGGGCGGGGGTGCACCGTGTACGACTCCGACGGCCACATCGTCTACCGCGT
CGACAACTACGGCTCCAAGTGCAGCGACAACGTCTGCCTCATGGACCTCCGCGGCAACATCGTCGTCAACATACACAAGA
AGGTGTGTACATTTTCCTTTGCTGAGAATATCATAAGG-TCTATGAAATACTATGTTGGCGCTCAAACGAATGTATGATC
GATGTTTCTGACTGGTTACTTA---ATTGTGGATTCCTGCAGAAGCTGGCGTTTGGCAAGTGGGAAGGGTACAAGTGGAC
CGGCCGGAAGCAAGAGGCCAGCGCGTGGTTCAAGGTGGCGCGGCCGCGCAGCGGCATCTTCCACCGGAGCGGCCGCCGCC
CGTCGTCGTCGCCGTGCGAGTTCGAGAGCGACGCCGGCCGCGCCATGCGGTACATGATCGACGACGACGGCGGGGCGCGC
GCAGGGAAGCGAGCGTGCTGCAGGATCGTGGACGCCGGCACCGGGCTGGTGGTGGCGGAGGTGAAGAGGAAGGTGACGGC
GGGCGGGGTGGCGCTCGGGGAGGACGTGCTCGCCCTGGTGGTGGAGCCCGGCGTCGACGACTCGCTCATCATGGGGCTCG
TGCTCGTCTACGGGCTCATGAATCGCACCATGTGAAGCAAAACCAGAACAGAATAGAGACTTGTATAGTCTTTCTTCGTG
TGAATTACCGTGTATGCAACTGCGAGTAGAACGACTTCGTAGTGTGACACAGATGACATGATCTACAAGTGATTTTGATT
CCATGTAGTGCGACACGACATCTCCATCAA-CTTGCGATGACTTTGTTAGTCTCAAGATTTGCGTATATGCGGTC-----
-GTTTGTACTGCCAAAAATGTTCAGCGTCGCCTAAGATGGGTATAACAAAACACACTTTGTTCCCCAGGTTCGATCAGTG
CAAGTTGTTCATTCCCACCCGATGACTTCAATCGTCCGATGGCCATCAGTGTTAACTACTACGCG---------------
----------------------------TGTAGATTCTAACTCTCGACCAGGGTCATGC---------------------
------G-TTGACCTAAAGGTGCAAATCACTGAGGAACATACCACATCAATTAAGGTCTTAATTAAGGCCTTGTACAATG
CAAAGATGCATAATTATTTGTAAAGAGTAGACACTCAATTAGGCACCCCTTCTATAGGGATAAGCACTGATGCTTAACTT
G------GTTTATTTTC---------------CTAAGCACCATGTA------CTGTATACAAGACCTAACTGGATTCGCA
CTGGCTGGAACATCAATTAACTGAACTGTATTCTGATGCTCAGTCTACATACAGGTTTGACCGTTCAAGGAGAATGGTGG
ACCAACCAGGTCCTACGCTATCTGTAGGAACTCCAAACTGACATTACAAAACAATTGACTCAAAAAAATTGCCTATAAAT
GAA-AACCAACAGAGCTATTCATTGCCTATCTTCTCAGTCGTTTCACTATAATGCTTCTGCTCTATGTACAGACTAGACA
TAAGCTACATGAAGTAGCTTAGAGGTGTCTTCTTTCTAGATCCGCCTTCACCGTAAAGCTCGTTCCACTGAACAAGCTCG
TTCATATTTGTCGAATCAGATGATATACTTGCACATACCTACACACGAGGCAAGTTACGTTAGGATCACACTTTTATCAA
CAACTTGGAGATGAAAAAACATAT-ATGACAATGCGGGTAACCTTAATTTATTCTAGTACTCCCTCCGTCCCG----AAG
TGTCTCAACTTTGGACTA--
>SNPs
-----------S--------------------------------------------------------------------
------------S--S-------S----------S-----------SS----------SSSSSSSSSSSS----------
----S--------------------S-----S-------S------S---S-----------------------------
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-S----------------------S-----------------------------------------S----SSS-SSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS------------------------------------
--------------------------------------S-----------------S-----------S-----------
--S--------------------S----------------------------------S--S--------------SS-S
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----------S-----------------------SS---------------------------------S----------
---------------------------------------------S-----S----S-----------------------
-------------------------------------S--S---SSSSSS------------------------------
-----------S-----------------------------------------------------------S--------
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----------------------------------S---S-----------------------------------------
---S----------------------------------------------------------------------------
------------------------S------------------------S------------------------------
-S--------------------------------------S---------------------------------------
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-----------------------------------------------------------------S--------------
--------------------------------------S-----------------------------------------
-----S--------------------------------------------------------------------------
---------------------------------------S--S-------------------------------------
--------------------S------------------S---------------S---------------------S--
----S----------------------------------------------------S----------------------
-------S------------------------------------S-----------------------------------
---------------------------------------------------S-----------------S----------
-------------------------------------------------------------------------S------
---------------------SS----SSSSS---S--------------------------------------------
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------------------------------------------------------------------------------S-
----------------------------------------------------S---------------------------
-----------------------------------S--------------------------------------------
-----------------------------------------------------S--------------------SSS---
-------------S----SS
>forward_603
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-----------------------TCCCCACTATGACCAGCCTT-------------------------------------
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>reverse_2218
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---------------------------------------------------------CGATTCCGTTTCGTCAGGTC---
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