>input_sequence_69366
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-----ATGCGCCTGCTAACCAGGGGATCAAGATGCCCCGCGCCTTCGTCCGCGGACCGCCGTGGCCGCTCCCCGCCACCT
TCGCCGCGCTCTACATCTGCTGCCACCATCGAGCTACGCACCCCTTCCAGTGTGGACAGGTTGCGCAGAGTGGCGCCATG
CTTCGGCGCCAAGATCACACCAGACTCTGCTTTTTGGTCCCCTTCTCTGACGGTTCAGAACACGGAAGCCCTGGCGGACC
CGGATGCTTCTGTTGATGCGGCGCCGTTTACCTCGCCCTCGGCTATCACCCCCGTCTTTCAGGCAGCGGGGGCTGCCTCC
AGTGTTGCCTCGCCGTCCCCGGTGGTTGGAACACCGCTGTTTGTTCCGGCCCAGCCTCCTCTCCTTCCTGCACCAAGCTC
CATCGCGCCAAGGGCTCTCAGGAATCGAAGGAAGACGCTGGCCGGTGTGCAAGGTTTCAACCTGAGTAGGCGTAGCCCCC
GGCTACGCGAGAAGAAGCACACCTTGCCCATTGCGCAGCTCGCCGAGCAACTGCTCTGTCGTCGGCTTGGTATCGTTGCT
GATGGTGAGCCCATCACCGAGGCTGCTATCGGCAAGTTCGTCGACCTCTTCCATGGCGAGCTCCCTGACATCGCTGTTGC
TGCGCTTCGTGCTCTTTTCCAGCTCGACTGCGACCTTGCAACTGCTGTTGAAGAAGCCTTGATCGTGCATGGCGGTGAAG
ATGGCCCAGACCTCCAAGACAGTGTTGCTGCTGCTGCATCAGCCTCTGCCTGA---------------------------
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>chr1D_1_TraesCS1D01G151000
AGTAAGGGAAAAATTATGAACGTAAAGGAGCCAAACAGTACAGGGGTGAAAGTGTAAAATCTCAAAAACATGAAGGGGCC
ACAAACACAACGG-TACAGAAGTGAAAGCGCTAAATCTCAAAAGCCCAAACACGGTAGCACAGGGTCATACGTGTGAAGT
CTCGGAAAACATAAAGGGGCCAGGCAGAAAAGTACAGCGGTGATAGCGCTAAATCTCAAAAGCCCAAACACGGTAGCACA
GGGTCATACGTGTGAAGTCTCGGAAAACATAAAGGGGCCAAGCAGAAAAGTACAGGGGTGATAGCGCA-----------A
AATTTGAACAATTTCTCAATTTGTGCATGTCATCCTTGCACAAGGCCC-TGCTAATCTTCTTTGTATTGTTCCAATTTTA
TCAAATGTCCCTGAATG-------GTGATCTCATGCCTCGGCTTATAAAATGGTCTGGGCGAAGCTCGGCAAGCGATGTG
GGACTAAACGCTGGCACCGCTTCCGTCCCACAACCCTCCTTTGGGCCGTCCGATTCAATACTAACGGGCCAGATCCAAGG
CCACGCTGACGTC--CTGTCCAGCACGATTTTGCAGGGGATCTTCTGCGGCTTCTGACACGCGCGTGCCCTTGTGGGTTT
TCTCTAGCCGTCTCAC-GTGACTTCGAGACCGGACTGCCGTGTACAAGGTACAAGTACGTTCTCGTGAAACTCGTATTCT
ACGTA--------------TAAACTGTTCATCTGACCGTGCTCATAGCAGCAATTTTTATACGCTCTCTATCACGTAACA
CA--------CACATACGATGTGTACAACAGCAGTTTCCTCTGCAAGACAACAGTAAAATTCTTGGGCGCCTGCTTCAGC
CCGTTGGTGGACACGCCCTCTTCCGCTGGGGGCCTTTCTGCTGCTTCGCCGGCCAAGACCTCTTCGCCTGCTGCTCGCCC
TTCCACAACTGTGGGGGAGCCGCAGGGCCAGCCTCCTGCTGGGTCAGGCTTCGCGCTGTTGCTGCGCAATGGAGAGCCGA
GGCCCATGCGCCTGCTAACCAGGGGATCAAGATGCCCCGCGCCTTCGTCCGCGGACCGCCGTGGCCGCTCCCCGCCACCT
TCGCCGCGCTCTACATCTGCTGCCACCATCGAGCTACGCACCCCTTCCAGTGTGGACAGGTTGCGCAGAGTGGCGCCATG
CTTCGGCGCCAAGATCACACCAGACTCTGCTTTTTGGTCCCCTTCTCTGACGGTTCAGAACACGGAAGCCCTGGCGGACC
CGGATGCTTCTGTTGATGCGGCGCCGTTTACCTCGCCCTCGGCTATCACCCCCGTCTTTCAGGCAGCGGGGGCTGCCTCC
AGTGTTGCCTCGCCGTCCCCGGTGGTTGGAACACCGCTGTTTGTTCCGGCCCAGCCTCCTCTCCTTCCTGCACCAAGCTC
CATCGCGCCAAGGGCTCTCAGGAATCGAAGGAAGACGCTGGCCGGTGTGCAAGGTTTCAACCTGAGTAGGCGTAGCCCCC
GGCTACGCGAGAAGAAGCACACCTTGCCCATTGCGCAGCTCGCCGAGCAACTGCTCTGTCGTCGGCTTGGTATCGTTGCT
GATGGTGAGCCCATCACCGAGGCTGCTATCGGCAAGTTCGTCGACCTCTTCCATGGCGAGCTCCCTGACATCGCTGTTGC
TGCGCTTCGTGCTCTTTTCCAGCTCGACTGCGACCTTGCAACTGCTGTTGAAGAAGCCTTGATCGTGCATGGCGGTGAAG
ATGGCCCAGACCTCCAAGACAGTGTTGCTGCTGCTGCATCAGCCTCTGCCTGAGCTTGCTTGTTGCTGTTTTCTGGTGCT
TCCCAGTTAACCATGTTAGAACATCATCATCTAGTCTACAGCGTTAAGACCCCAGGTGCTTGTATGCCTGTTTGTAGCCT
GCTCCTGTTGCGACTGCTGCTTGTTGCCTTGGCACGGCCATGGTGTGATGTACCTCCTGACTACTGTTTGCCACCAATGC
AAAACTTCCAGTTTTTAGTATCATGTCTTCTCCTTGGTGTTTGCTTTGGTATTACTCCCTCCGTTCCTAAATACTTGTCT
TTCTAGCCATTTCAAATGAATATCACATACGGATGTATGTAGACATATTTTAGAGTGTAGATTCACTCATTTTACTCCGT
ATGTAGTCACTTGTTGAAATGCCTAGAAAGACAAGTATTTAGGAACGGAGGGAGTAGATGTTAACACAACGCCTGCATTT
ATCTGTCCTGAACTGGAACGTCCGTGGGCTCAATTGCCCTGATCATCGTGCAACTGTTCGGGAAACGATCACCTCCACCC
CTTGCCACCTGGTTTGCTTGCAAGAAACCAAACTGGAGGTGGTTGACTCCTTCATTGCCACCTCCATTGGTGGCCAAAGA
CTCAGCCATTTCGCTCAGCGTCCGGCTGCTGGCACTCGAGGAGGCATTCTTTTGCTATGCGATGACCAATGTATCAAGGT
GGACCATGTCCATTTTGGCCCTTTTTCGCTTTCTGCTATGGTGACTCTGATTTCCTCCAACCTCACCTTTAAGATCACTA
CGGTGTATGGACCAACGCGGCCAAACCTAAAAGATGCATTCTTCAAGGGTTGATGAGAAGCCGGCGGCTGGGGTGATGTG
GCTTGTCAATGGAGATTTCAATCAGATACATCGAGCTCGAGATAAAAATAAGCCAAACGTGGATTCCAGCCGCATCACTA
GATTTCGAGCTGCGCTCAATTCTTGCGAACTCAAGGAGGTTCACCTTCAAAACCGCAGATTCACTTGGAGCAATGAGAGG
TCCAACCCAACTC
>chr1D_1
AGTAAGGGAAAAATTATGAACGTAAAGGAGCCAAACAGTACAGGGGTGAAAGTGTAAAATCTCAAAAACATGAAGGGGCC
ACAAACACAACGG-TACAGAAGTGAAAGCGCTAAATCTCGAAAGCCCAA-------------------------------
-------------------------A------------------------------------------CACGGTAGCACA
GGGTCATAAGTGTGAAGTCTCGGAAAACATAAAGGGGCCAAGCAGAAAAGTACAGGGGTGATAGCGCAAAATCTCGAAAA
AATTTGAACCATTTCTCCATTTGTGCGTGTCATCCTTGCGCAGCGACCATGCTAATCTTCTCTGTATCGTTCCAATTTTA
TCGGATGTCGCCGAAGAGACGAGAGTGCTCTCATGCCTCGGCTTATAAACTGGTCTGGGCGAAGCTCGGCAAGCGATGTG
GGACTAAACGCTGGCACCGCTTCCCTCCCACAACCCTCCTTTGGGCCGTCCGATTCAATACTAACGGGCCAGATCCAAGG
CCACGCTGACGTC--CTGTCCAGCACGATTTTGCAGGGGATCTTCTGCGGCTTCTGACACGCGCGTGCCCTTGTGGGTTT
TCTCTAGCCGTCTCAC-GTGACTTCGAGACCGGACTGCCGTGTACAAGGTACAAGTACGTTCTCGTGAAACTCGTATTCT
ACGTA--------------TAAACTGTTCATCTGACCGTGCTCATAGCAGCAGTTTTTGTACACTTTCTATCACGTAACA
CA--------CACATACGATGTGTACAACAGCAGTTTCATCTACAAGACAACAGTAAAATTC------------------
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>chr1A_1
AGTAAGGGAAATATTATGAACGTAAAGGAGCCAAACAGTACAGGGGTGAAAGTGTGAAATCTCACAAACATGAAGGGGCC
ACATACACAACGAATACAGGAGTGAAAGCGCTAAATCTCGAAA-------------------------------------
-------AACGTTAAGGGTCCAAACA------------------------------------------CACGGTAGCACA
GGGTCATAAGTGTGAAGTCTCGGAAAACATAAAGGGGTCAAGAAGAAAAGTACAGGGACCAAAGCGCAAAATCTTGAAAA
AATTTGGACCATTTCTCGATTTATTCGTGTCATCCTTGCGCAGGAGCCATGCTAATCTTCTCTATATCGTTCCAATTTTA
TCGGATGTCCCCGAAGGGAGAAGAGAGCTCTCACACGTCGGCTTATAAACTGGTCTGCGCGAAGCTCGGCAAGCCATGTG
GGACTAAACGCTGGCACCGCTTCCCTCCCGCAGCCCTCCCGTGGGCCGTCCGATTCAATGCCAACGGGCCAGATCCAAGG
CCACGCTGACGTC--CTGTCCAGCACGATTTTGCGGGGGATCTTCTGTGGCTGCTGACACGCGCGTGCCCTTATGGGTTT
TCTCTAGCCGTCTCAC-GTGACTTCGAGACCGGACTGCCGTGAAAAAGGTGCAAGTACGTTCTCGTGAAACTCGTATTCT
ACGTATACTTATTTCTGTATAAAGTGTTCATCTGACCGTGCTCATATCAG-------TATACTCTTTCTATCACGTAACA
GTGTAACACCCACATACGATGTGTACAACAGCAGTTACCTCTGCAAGACAACAGTAAAATTC------------------
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>chr1B_1
AGTAAGGGAAAAATTATGAACGTAAAGGAGCCAAACCGTACAGGGGTAAAAATGTAAAATCTTAAAAAGATGAAGGGGCC
ACAAACACAACGG-TACAGATGTGAAAGCGCTAAATCTCGAAAGGCCAA-------------------------------
-------------------------A------------------------------------------CACGGTAGCACA
GGGTCATAAGTGTGAAGTCTCGAAAAACAAAAA--GGCCAAGCAGAAAAGTACAGGGGTCAAAGCGCAAAATCTCAAAAA
AAATTGGACCATTTCTCGATTTGTGCGTGTCATCCTTGCGCAGGGGCCACGCTAATCTTCTCTGTATCGTTCCAATTTTA
TCGGATGTCCCCGAAGGGACGGGACAGATCACACGCCTCGACTTATAAACTGGTGTGCGTGTAGCTCGGCAAGCGATGTG
GGACTAAACGCTGGCACCGCTTCCCTCCCGCAGCCCTCCCATGGGCTGTCCGATTAAATACCAACGGACCAGATCCAAGG
CCGCGCTGACGTCCTCTGTCCAGCACGATTTTGCTGGGGATCTTCTGCGGCTGCCGACAC-CGCGTGCCCTTGTGGGTTT
TCTCTAGCCGTCTCACTGTGACTTGGAGACCGGACTGCCGTGAAAAAGGTGCAAGTACGTT-------------------
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>SNPs
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---------------------------------------S---------SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSS---S-S-----S---SS--SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS------------
--------S-----------------------------------------------------------------------
---------S-------S--------S------------S--S--S---------------S-----S------------
--SS-------S---S---------------------------------S------------------------------
------------------------S-------------------------------------------------------
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----------------------------------------------------S---------S--S--------------
--------------------------------------------------------------SSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSS
>forward_189
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---------CATAAAGGGGCCAGGCAGAA---------------------------------------------------
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>reverse_1281
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CGGATGCTTCTGTTGATGCG------------------------------------------------------------
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>forward_1226
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------CGCCAAGATCACACCAGACT------------------------------------------------------
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>reverse_2573
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------------CAACGCGGCCAAACCTAAAA------------------------------------------------
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