>input_sequence_69353
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-AGAATTTTGAAACACACTATAGCTACAAACGAACGTAACTTGATTCACACACCAGCTATCAGCGTCATTTTCATATATG
GCAGCCCGTGCCGGCGTCTTCTGCAAGGCCTCAAGGTTCCGTTGGCTATGCTTGGTGCGCAGCGTGGTCGCCACAGCGGT
CGCCGTGTTCGCCGGCGTCCTCGTTGTCTGGGCGGTGTTCCTGCTGTTCAATCCCCTCAAGCTCCAACTCCGGATCCCTA
GCAGCTCCGTGGTGGTAAGAAGAGTCCCCGAATCCGGTGACCG---GTACCGTTTCACCTTCTTTCTCCAGGCTACCAAC
CTCAGAAATCGCACCTCCATCTACTACCACAACGTCACCATCCGGCTCGCCGACAGCCAGGAGTACCTATCCTTGCCACG
GGAGAATCGGACCTTCATCGCTACGTTCAACCTGAG---GGCTAAGATATTCTTGTCTCAAGGGAAGGAGGCCGAATACT
TCTTGACGGAGCCCGTAGGCATGAAGTTGAACCTGTCGTACCTCCGGAAGCTCTTCCCCAACCAAACAGGCCACAACACC
ATCGACGTGGCCATGGAGGTGGATGGCTTCCTCACCGACTACGGGCCGGGTGTGGCCCACCGCGCCACCTACATCTGCAT
CCCGCTCAAACTCATGGGCAACTCCCCGCTGTCGTCGCTGTCCGACGAGAGCAACGCCTATTGCGCGCCTACTTACTAAT
GTTTTTTTAT-GATCGATGGATGTACTCGACCCCATTGCTTGTTTTGCCCCATTGAA-----------------------
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>chr5D_1_TraesCS5D01G567400
CAAAAGTCCGAACTGATGGAGGGAGGTGGGCAATATATTTCAACACTAACTGGATCAAAGGCACCGGGATTCCCCTCCCC
ATCGATGGCCGCTGGAGCAGTACGCAGAAGGGAGGTGAATTCACGGGTTTGTCGGTGAGGACTGGAGGGGAGAGTTTACC
CTAGCCATCTAGCTAGGGTTAGGAGAGGAAACAAGAGGAAGTCTTTGCCATGTTTTAACTACAGAAAGATTTTATTATGT
CTGAAACTATTTAAAATTTTGATCAAGGTTTTGTAAACTAAAAAATATTTTCAGAAAGCTATGAAAAAATTAGTGATATC
TAACATGTGTTTCGGCTAGGATCCTTTATATTTGAAAATGGAATGAGCACTAGTGCCGATCTCAAAGTCATTGTGCGGCC
ATGACAACAGGGATGCCTACTCCCAACAGTACCAATAGGCGAGGAAAAAATTGAAGAATTTACTTCATCTGATCATTGTG
TGTATCGACTATGCATGAATCGTGCATAGTCCATGAAGATAAAGCGGTGTGGAGCATACACTTGAAACAAATGCATTAAG
GAAAATAATATAATTACTTTGGAAAATAAATGTTTGCCTGCATGGATACGTAAGTAGCAACAAAGGAAAATGACAGCCGG
CCCTTTTTCTTTTTGAAAAGAAAAAGGTAATCATGCGCTGCATGGGTACGTACAACACTGAAATTAGCCAAGATCTGCGT
ATGGGCCTCTCTCTTTGCTTTTGGGATGGTTATAACTTTTTTCCTCCGAAACACACAGCCTTTTCTTTT-CTTTTCTTTT
CTTTTCGAAAAGAAAAGATAATCCTGTGCTGCACGCATGGG---------------------------------------
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-------------------------------------------------------------------------------T
ACCCACCTCATTGAAATCAGCCAAAATCTACGTAGGGCCCTTTCTTTGCCTTTGGGGTAGTTGA-TTTTTTCTTTTCTCT
GAGGCACACAACCGGTCCTTTTTG-TCTTTTTCAAAAGAACATATATTTATGCGCTGCATAGGTACGTACCTCATGGGTT
CAGAATTTTGAAACACACTATAGCTACAAACGAACGTAACTTGATTCACACACCAGCTATCAGCGTCATTTTCATATATG
GCAGCCCGTGCCGGCGTCTTCTGCAAGGCCTCAAGGTTCCGTTGGCTATGCTTGGTGCGCAGCGTGGTCGCCACAGCGGT
CGCCGTGTTCGCCGGCGTCCTCGTTGTCTGGGCGGTGTTCCTGCTGTTCAATCCCCTCAAGCTCCAACTCCGGATCCCTA
GCAGCTCCGTGGTGGTAAGAAGAGTCCCCGAATCCGGTGACCG---GTACCGTTTCACCTTCTTTCTCCAGGCTACCAAC
CTCAGAAATCGCACCTCCATCTACTACCACAACGTCACCATCCGGCTCGCCGACAGCCAGGAGTACCTATCCTTGCCACG
GGAGAATCGGACCTTCATCGCTACGTTCAACCTGAG---GGCTAAGATATTCTTGTCTCAAGGGAAGGAGGCCGAATACT
TCTTGACGGAGCCCGTAGGCATGAAGTTGAACCTGTCGTACCTCCGGAAGCTCTTCCCCAACCAAACAGGCCACAACACC
ATCGACGTGGCCATGGAGGTGGATGGCTTCCTCACCGACTACGGGCCGGGTGTGGCCCACCGCGCCACCTACATCTGCAT
CCCGCTCAAACTCATGGGCAACTCCCCGCTGTCGTCGCTGTCCGACGAGAGCAACGCCTATTGCGCGCCTACTTACTAAT
GTTTTTTTAT-GATCGATGGATGTACTCGACCCCATTGCTTGTTTTGCCCCATTGAAGTACTACTTTGTGCGGCCTGAAT
TCTTAACTATCACTCCCTCCATTCCACTAATGCTTATCATGGTTTTAGATCAAATTTGAACTGAAACCATGACAGCAGTT
ATGTAACGGATGGAGTACTATATACATTTTCTTTGAATTTTATTTTACGAGGGAGCATGTGTGCTCAGATCAAAAGAGCA
CTTTAGCCTCTCAGGCCGATTGCTTGTTTTACTGCTAGTCGATCTTCTTTGTTCATTGTAGTATATCCACTGTCGCTAGC
TAATCCGTGTTTTTTGCACAGGCTGTTAATCTAGAGAAACGCTTAAAATCCAACAGCTGATACACGCGAAACTTCAACCG
CGCTCTTGTCTGATGATTTTTATTTTTTTCTCTCTAGCTGCCTTATGCTCTCGCATCGGCCCAGGTTTTAACAGATCAAA
CGGCCACACAGTGACCAGCTGAAATTTCAGCCAGCTAACCGACACCTATCACTCGCCTATATAAAAGAGAGGTGTGTTCC
CTATACAGATAAGAAATCACATACAAGTAATGAGTTATCAAAAGGCCCTCAATACCGATCGAAAAGAAGCGCTAAGGGTC
CAGAAGACCGTCTCCACCACCACTGTGCCCTGCCAATCACGGTTAGTGACTGACTACTATTCCCCTCCAGAGGTGTTCTA
ATTAAGAGATCTAAGATGATCCTGTTATGTTAATCCTGGAGACTTGATTGTAACAACATACAGTCCGCTACAAGGTCATT
GCTCTCCTCCCTCATTTGTTGGAGCTCGAAGCACTGGACGGTTAGCATTCAAGGTAACTAGCCATATTAATAGTATATCT
ATCGAACACATTTAGACTAGCCACAATGGAGAGTAACATACACATATTCTTAGACTATGTTACTACCTTCATAGTGGGGA
GTAACATAAGTATGGTAACATGCAAAGCTTCATTTATTATTTTATAGACTCATATTGCATTGGAACATGTGATGTTACAG
TAACTAGCTAAGTTACT
>chr5B_42
AACTAC----------------------------------------TAACTCGATCGAAGGCACCGGGATTCCCCTCCCC
ATCAATGGCCGTTGGAGCAGTAGGCATAAGGGAGGTGAATTCACGGGTTTGTCGGTGAAGACTGGAGGGGAGAGTTTACC
CTAGCCATCTAGCTAGGGTTAGGAGAGGAAACAAGAGGAAGTCTTTGCCATGTTTTAACTACAGAAAGGTTTTATTGTGT
CTGAAACTATTTAAAATTTTGATCAAAGTTTTGTAAACTAAAAAATATTTTCAAAAAGCTATAAAT---TTAGTGATATC
TAACATGTGTTTCGGCTAGGATCCTTTATATTTGAAAATGGAATGAGCACTAGTGCCGATCTCAAAGTCATTGTGCGGCC
ATGACAAAAGGGATGCCTACTCCCAACAGTATCAATAGGCGAGGACAAAATTGAAGAATTTACTTCATCTGATCATTGTG
TGTATCGACTAAGCATGAATCGTGCATAGTCCATGAAGATAAAGCGGTGTGGAGCATGCACTTGAAACAAATGCATTAAG
GAAAATAATATAATTACTTTGGAAAATAAATGTTTGCCTGCATGGATACGTAAGTAGCAACAAAGGAAAATGACAGCCGG
TCCTTTTTCTTTTTGAAAAGAAAAAGATAATCATGCGCTGCATGGGTACGTACAACACTGAAATTAGCCAAAAACTGCGT
GTGGGCCTCTCTCTTTGCTTTTGGGATGGTTATAACTTTTTTCCTCCGAAACACACAGCCTTTTCTTTT-CTTTT-----
CTTTTTAAAAAGAAAAGATAATCATGTGCTGCA----TGGGTACCTATCTCATTTTCTTTCATGGTAATGCGTGCCTCAT
TTATATCATAAGGATCAGAGTACAAGCTACGTATATATCGACCTGACAAAACTGAAAAGACAGCAGAACGCTAGCCTTTG
CACACAAGAACACCAGCCAACAAGTAAAATTACAAACAAGACTGAAGAATCCTCTGAGCTTGACACCAACGTCCGTCACC
TGCCTCTGGCACCACCATGGCAGCCACCAAAGAAGAAAATGACGGATCACCTCCACACCCGAGCTCGACGCGGCTCCATC
GCTGATATGCAGCTTTGCGGACCTCCAAGGTGGCTCGCCAATAAAGGCGAAGCCATTGCCGTTGAACGAATCAGACAGGG
GCAGCACCCCGGACACGTCATCGAACTCCAGATCCGGCACCTCCGCGCAACTAAGACGTTGGAGGAGCAAACCATACCTG
CCTGCCACGAACCACGAACCCAGATCCACCATCTTTCATATGCCGCCGATGCAGACCACAATCTGCATCCCCTCCTGGAC
TACCTCCCAAACTCCACGTCGGCGCTGGAGCAAACACCGGCGCAACGGCGGAGCCCGAGGACACAGGTCCACCACGAGGA
TGCCTCCGCCGCCGCACCATCCTTGCTTGAACAGTCTGGTTTCCAAATCCATCCAAAAAGCGGATCGCCTCGTTGGAGAA
GGATCTGAAGATTTATTAGTCGGCGCTGTCATCGCCACCGTCCACCATCGAAGCCATGACGATGAACAACCCAAAATCCT
AATAAAACTAATGCCTAAAACAATCCACACGCGTGGATCCGGTGACCCCCTTACCACCGACGACCGAGGTCGTCAGCGGA
GGGGAGCCGCCGGAGGACGGCGACGGAGAAAGACGCCCTGGCAGCGGCAGGAGGCGAGATCGCCTTTCTTTCTTCTCCTT
ACCTACCTCATTGAAATC-GCCAAAATCTACGTAGGGCCCTTTCTTTGCCATTAGGGTAGTTGGTTTTTTTCTTTTCTCT
GAGACACACAACCGGTCCTTTTTTC-CTTTTTGAAAAGAAC-------TATGCGCTGCATAGATACGTACCTCATCGGTT
CAGAATTTTGAA-----------------------------------ACACACCAGCTGTCAGCGTCATTTTCATATATG
GCAGCCGGCGCCAGCGTCTTCTGCAAGGCCTCAAGGTTCCGTTGGCTATGCTTGGTGCGC-----------CACGGCGGT
CGCCGTGTTCGCCGGCGTCCTCGTTGTCTGGGCGGTGTTCCTGCTGTTCAATCCCCTCAAGCTCCAACTCCGGATCCCTA
GCAGCTCCGTGGCGGTAAGAAGACTCTCGGAATCCGGTGACCAGCAGTACCGTTTCACCTTCTATCTCCAGGCTGCCAAC
ATCAGAAATCGCACCTCCATCTACTACCACAACGTCACCATCCGGCTCGCCGACAGCCGCGAGTACCTATCCTTGCGACG
GGAGGATCGGACCTTCATCGCTACCTTCAAGCTGACGGCGGCTAAGATATTCTTGTCTCAAGGGAAGGAGGCCGACTACT
ACCTG----------------------------------------------------------------------ACAGC
ATCGAGGTGTCCATGGAGGTGGATGGCTTCCTCACCGACTATGGGCCGGGTGTGGCCCACCGCGCCACCTACATCTGCAT
TCCGCTCAAACTGGTCGGCAACTCCCGGCTGCCGTTACTGTCTGACGAGAAGAGCGCCAATTGCGCGCCTACTTACTAAT
GTGTCTTATGAT--------------------------------------------------------------------
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>chr4A_757
TTTTTCTC------------------------------------------------------------------------
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------------------------------------------CCTCTGAAACACACAGCCTTTTCTTTTTCTTTT-----
CTTTTCGAAAAGAAAAGAAAATCATGTGCTGCA----TGGG---------------------------------------
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-------------------------------------------------------------------------------T
ACCTACCTCATTGAAATCAGCCAAAATCTACGTAGGGCCCTTTCTTTGCCTTTGGGGTAGTTGATTTTTTTCTTTTCTCT
GAGACACACAGCCGGTCCTTTTTTTTCTTTTTGAAAAGAAC-------TATGCGCTGCATAGATACGTACCTCATCGGTT
CAGAATTTTGAA-----------------------------------ACACACCAGCTATCAGCGTCATTTTCATATATG
GCAGCCGGCGCCGGCGTCTTGTGCAAGGCCTCAAGGTTCCGTTGGCTATGCTTGGTGCGCAGCGTGGTCGCCACGGCGGT
CGCCGTGTTCGCCGGCGTCCTCGTTGTCTGGGCAGTGTTCCTGCTGTTCAATCCCCTCAAGCTCCAACTCCGGATCCCTA
GCAGCTCCGTGGCGGTAAGAAGAGTCTCCGAATCCGGTGACCT---GTACCGTTTCACCTTCTTTCTCCAGGCTACCAAC
CTCAGAAATCGCACCTCCATCTACTACCACAACGTCACCATCCGGCTCGCCGACAGCCAGGAGTACCTATCCTTGCCACC
GGAGAACCGGACCTTCATCGCTACGTTCAACCTGAA---GGCTAAGATATTCTTGTCTCAAGGGAAGGAGGCCGAATACA
TCTTGACGGAGCGCGTAGGCATGAAGTTGAACCTGTCGTACCTCCGGAAGCTCTTGCCCAACCAAACAGGCCACAACAGC
ATCGACGTGGCCATGGAGGTGGATGGCTTCATCACCGACTACGGCCCGGGTGTGGCCCACCGCGCCACCTACATCTGCAT
CCCGCTCAAACTCATGGGCAACTCCCCGCTGTCGTCGCTGTTCGACGAGAGCAACGCCTATTGCGCGCCTACTTACTAAT
GTTTTATGATGGATGGATGGATGTACTCGACCCGATTGCTTGTT------------------------------------
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>SNPs
S-SS-S--SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS-----S----S-----------------------
---S-------S----------S---S-------------------------------S---------------------
--------------------------------------------------------------------S-------S---
--------------------------S--------------------------S--------S--SSSS-----------
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-------S-----------------------S-------------S----------------------------------
-----------S---------------------------------------------S----------------------
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S-------------------------S--------------------------------------------S-S------
S--------------------------------------------------------------------------SSSSS
-----------------------S---------SSSS-------------------------------------------
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---S----------------------------------------------------------------------------
---S-------------------S--------S--------SSSSSSS--------------S------------S----
------------SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS---------------------------------
------S-S-----------------------------------------------------------------S-----
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------------S-------------S---------------S-------------------------------------
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-----------------------------------S--------------------------------------------
------------S------------------------------------------S----------------------S-
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-------S------S------------------S----------SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSS
>forward_24
----AGTCCGAACTGATGGAGGGA--------------------------------------------------------
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>reverse_2889
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--------TCTCAGGCCGATTGCTTGTT----------------------------------------------------
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