>input_sequence_69348
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----------------------------------------ATGGCTTCCATCGTGTCCAAGCTCGCGCGGGCAGCCTTAG
CAACCCGCGCCTCTCCCTCAGCCGTTGGAGGTATTGCTGGTGGCGGTCGCCCTGCAGCCGCCATCCGTGTCTCCCCTGCA
GGTAATCCCAAAGGAGTTCTTA----TT-CGATATGAATACTTCAGAATTTGGGTATAA----TTTCTTATTATCAGTAG
ATATGTCTGAATAAACAGGTAG-GGACTGGACCCTATTCATTAGGGATTGTTCTAATCACCACACTTCTAACAAACATGT
TGTTTTGATTTAGTAATACCAACTGA-AATTTGTTATAATACCAAGCTCTGCCTTGCAAGGCTAAAT-AATGAAATGAAC
TCTGCTGAGACTGAGAGCAATAGTACAAATGATCGTATTTTCGACAAATCAAATTGTAACTCTATTTGCCTACTCAACGA
CAGGAGGCCCCAAGTCAGAAGA---AGAA---------GAGAAAGCCAGACCCAAGTCACAAGTAGCTCCAGATGATGAA
ATCATACACCCCCATCTCGCT-GTTGATGAGAATGCACTTAAGTCCGACGAAGCCATGTGGGCCTTCTATGAGCACTGGT
GCAAGTTTCATGGCATATCGCGTGACCGTCTTGAGATGGAACGCCGGTTCAACACATTTAGTGATACAGCAAGGCTTGTG
CACAAGATCAACAATTCTCTTGTGGATGGCGAGTTGTTAATGACCAGATTTTCAGATCAGACCAAGGCGGAGAGATCTCG
TCGTTCACTAGGATATAGGCGCACGAAAAAATGA----------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
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--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
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--------------------------------------------------------------------------------
----------
>chr3A_1_TraesCS3A01G319300
ATCATCTAGGACTTCCTGTAACACCCACAAGATTCTCCGAGGCACTTTCAGACCCTTCTCTCCACTCTTCATTACACAAT
TGCATTCATACACACCCCTAAACCGTTAAGCGCATGACCCTACAGGTTCGAGCATATGCGGACATGTTTGGAACACATTA
CAATCAATACTCATTAGCGGGATCTGGATACCCATATTGACTCCCGCATATCATTGAAGATCTTTATCAAGTGAACCTTG
TATTACCGTAAATAATTCCTTTTGCTTCACAAAATGTTACACACCCTGAAGAGACTATGACAGTATCTCGTGATCAATAT
TTGAACATTATACCTAGTTATCCTCATTATTGGTCTATATTCTTTACTCCTTTATGTATTCCAGTATTCTCGTGACTAAC
TCCTTAATCACAATATTTGGACAGACGATACTAAAGACTGTAATACCGAGAGGGCCCAGAGGGTATCTATTCATCATCGG
ATGAGTAAATCACAGTCTTGACACAACTAGCGTCATGACATACTCTTTCTTAGTTACACATAGTTGCAACCCATGTGCAA
CCCCTAGACCATATGAATCACGATGCGAAATCAAACGACTAGGGAACTCATTGAGCTCCAACATAATTTTCAGTCGAGAG
ATCGATTAGCAAAACCAATTTTTTGAAATTATATAATCCATTCACCTAATTTTCCAGCATATATGGTGAAGGGTTTTTAT
TTTTGCTGCTTGATTTTGTTTGGACACATAGTAAACATTGTTTTAGTGTGATGTGAACCAATTTTCTTGAAATATAACAT
TTTTCTCGACGTAAATGAAATACTATGCGTATTTATTTATTTTCGTTCTAATAGGAAGTGTAAATTATAGTAGGAGTCCC
CCACAAAAAAAAATTATAGCAGGAGGCTGTACACAGACAAATATAGAAAGAAAATCAAAAGGAATGAACGAAAAGAACTT
ACAAACCCTAAATCCAGATCTATCCCCTCCGACCTAGGCTATGGCTTCCATCGTGTCCAAGCTCGCGCGGGCAGCCTTAG
CAACCCGCGCCTCTCCCTCAGCCGTTGGAGGTATTGCTGGTGGCGGTCGCCCTGCAGCCGCCATCCGTGTCTCCCCTGCA
GGTAATCCCAAAGGAGTTCTTA----TT-CGATATGAATACTTCAGAATTTGGGTATAA----TTTCTTATTATCAGTAG
ATATGTCTGAATAAACAGGTAG-GGACTGGACCCTATTCATTAGGGATTGTTCTAATCACCACACTTCTAACAAACATGT
TGTTTTGATTTAGTAATACCAACTGA-AATTTGTTATAATACCAAGCTCTGCCTTGCAAGGCTAAAT-AATGAAATGAAC
TCTGCTGAGACTGAGAGCAATAGTACAAATGATCGTATTTTCGACAAATCAAATTGTAACTCTATTTGCCTACTCAACGA
CAGGAGGCCCCAAGTCAGAAGA---AGAA---------GAGAAAGCCAGACCCAAGTCACAAGTAGCTCCAGATGATGAA
ATCATACACCCCCATCTCGCT-GTTGATGAGAATGCACTTAAGTCCGACGAAGCCATGTGGGCCTTCTATGAGCACTGGT
GCAAGTTTCATGGCATATCGCGTGACCGTCTTGAGATGGAACGCCGGTTCAACACATTTAGTGATACAGCAAGGCTTGTG
CACAAGATCAACAATTCTCTTGTGGATGGCGAGTTGTTAATGACCAGATTTTCAGATCAGACCAAGGCGGAGAGATCTCG
TCGTTCACTAGGATATAGGCGCACGAAAAAATGATCTCCGCCCTTGCTGATGTACTCTTCTGTGCCCCTTAAGCCCTAAG
TTATGCTTCTGTATA---CCAAGACAGGCCTC----TAAGTTCTAGCAGTAACGTGTGTCGCTCTGTTGTATGAACTCAT
TTTAGCTTTAATGAAAGCCTGTATCTGCGTGTGCATTGGACAAGTGGTATCTTTGGCTTTGTTGTATGAGCTCATTTAGC
TTTAATAGATGCTATG-TTTCTGTATCTGCTCCGTTTGTGGCTTTTGGTGCAGAATTCTAA---TACTCCTGGTCAACTT
GGCAGACAATTTCTTTTTTTTTGGTTAAATACAGATCATTCTTAATACTAGACACCACCAAATTTGCTAGCATATAACCA
AAGGCATTTAT----ATGACTCGTTGCAGCAAATGAGAACATGTATGCAGCAAAAAGAGAAACAATGTTCTCGTTGGTT-
ACTTGGATTGGTTCTTCCATGCAGCAAATGAGAACATTGTTTCTCCTTCTTGGTGTTGCATTGTTCTCTGTTTGTTTCAT
TGGTTTCCTTTGTTTTGTGTTGCGGTGCTGTTTCTTTTCGTGGGAGGATGTATCTTGGTGGCCCAGAATATACATGTTCT
TATCGCTGGGTTTTTTTTNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNCTCATTTTAGTGCATTT
ACACAGAAACGGATGTTCTATAACCACTGTTGCAAGGGTGGTAAAATAAACTTGCCAGTGTATAAGCCGTGGCTGACTCC
TCTTGATCGGCTGGTTAGGTTTGGTGTAGGGAGTGAGTCGATGGAGTTTATGCACTTGGTTAGGTCTTATAACAGCATGT
TTGATTTTTC
>chr3A_1
ATCATCTAGGACTTCCTGGAACACCCACTAGATTCTCCGAGGCACTTTCAGACCCTTCTCTCCACTCTTCATTACACAAT
TGCATTCATACACACCCCTAAACCATTAAGCGCATGACCCTACAGGTTCGAGCATATGCGGACATGTTTGGAACACATTA
CAATCAATACTCATTAGCGGGATCTGGATACCCATATTGACTCCCGCATATCATTGAAGATCTTTATCAAGTGAACCTTG
TATTACCGTAAATAATTCCTTTTGCTTCACAAAATGTTACACACCCTAAAGAGACTATGACAGTATCTCGTGATCAATAT
TTGAACACTATACCTAGTTATCCTCATTATTGGTCTATATTATTTACTCCTTTATGTATTCCGGTATTCTCGTGACTAAC
TCCTTAATCACAATATTTGGACAGACGATACTAAAGACTGTAATACCGAGAGGGCCCAGAGGGTATCTATTCATTATCGG
ATGAGTAAATCACAGTCTTGACACAACTAGCGTCATGACATACTCTTTCTTAGTTACACATAGTTGCAACCCATGTGCAA
CCCCTAGACCATATGAATCACGATGCGAAATCAAACGACTAGGGAACTCATTGAGCTCCAACATAATTTTCAGTCGAGAG
ATCGATTAGCAAAACCGATTTTTTGAAATTATATAATCCATTCACCTAATTTTCCAGCATATACGATGAAGGGTTTTTAT
TTTTGCTGCTTCATTTTGTTTGGACACA--GAAAACATTGTTTTAGTCTGATGTGAACCAATTTTCTTGAAATATAACAT
TTTTCTCGGTGTAAATGAAATACTGTGTGTATTTATTTATTTTCGTTCTAATAGGAAGTGTAAATTATAGCAGGAGTCCC
CCGCGAAAAAAAATTATAGCAGGAGGCTGTACGCAGACAAATACAGAAAGAAAATCAAAAGGAATAAACGAAAAGAACTT
ACAAACCCTAAATCCAGATCTATCCTCTCTGACCTAGGCTATGGCTTCCATCGTGTCCAAGCTCGCGCGGGCAGCCTTAG
CAACCCGCGCCTCTCCCTCAGCCATTGGAGGTATTGCTGGTGGCGGTCGCCCTACAGCCGCCATCCGTGTCTCCCCTGCA
GGTAATCCCAAAGGAGTTCTTA----TT-CGATATGAATACTTCAGAATTTGAGTATAA----TTTCTTATTATCAGTAG
ATATATCTGAATAAACAGGTAG-GGACTGGACCCTATTCATTAGGGATTGTTCTAATCACCACATTTCTAACAAACATGT
TGTTTTGATTTAGTAATACCAACTGA-AATTTGTTATAATACCGAGCTCTGCCTTGCAAGGCTAAAT-AATGAAATGAAC
TCTGCTGAGACTGAGAGCAATAGTACAAATGATCGTATTTTCCACAAATCAAATTGTAACTCTATTTGCCTACTCAACGA
CAGGAGGCCCCAAGTCAGAAGA---TGAA---------GAGAAAGCCAGATCCAAGTCACAAGTAGCTCCAGATGACGAA
ATCATACACCCCCATCTCGCTCGTTGATGAGAATGCACTTAAGTCCGACGAAGCCATGTGGGCCTTCTATGAGCACTGGT
GCAAGTTTCATGGCATATCGCGGGACCGTCGTGAGATGGAACGCCGGTTCAACACATTTAGTGATACAGCAAGGCTTGTG
CACAAGATCAACAATTCTCTTGTGGATGGCGAGTTGTCAATGACCAGATTTTCAGATCAGACCAAGGCGGAGA-ATCTCG
TTGTTCACTAGGATATAGGCGCACGAAAAAATGATCTCCGCCCTTGCTGATGTACTCTTCTGTGCCCCTTAAGCCCTAAG
TTACGCTTCTGTATA---CCAAGACAGGCCTC----TAAGTTCTAGCAGTAACGTGTGTCGCTCTGTTGTATGAACTCAT
TTTAGCTTTAATGAAAGCCTGTATCTGTGTGTCCATTGGACAAGTGATATCTTTGGCTTTGTTGTATGAGCTCATTTAGC
TTTAATAGATGCTATG-TTTCTGTATCTGCTCCGTCTGTGGCTTTTGGTGCAGAATTATAA---TACTCCTGGTCAACTT
GGCAGACAATTTCTTTTTTTT-GGTTAAATACAGATCATTCTTAATACTAGACACCACCAAATTTGCTAGCATATAACCA
AAGGCATTTAT----ATGACTCGTTGCAGCAAATGATAACATGTATGCAGCAAAAAGAGAAACAATGTTCTCGTTGGTA-
ACTTGGATTGGTTCTTCCTTGCAGCAAATGAGAACATTGTTTCTCCTTCTTGGTGTTGCATTGTTCTCTGTTTGTTTCAT
TGGTTTCCTTTGTTTTGTGTTGCGATGCTGTTTCTTTTCGTGGGAGGATGTATCTTGGTGGCCCGGAATATACATGTTCT
TATCGCTGGGTTTTTTG--GGGGGGTATAATGTGTGTGTTA---------------------------------------
--------------------------------------------------------------------------------
---------------------------------------------------------------CTCATTTTAGTGCATTT
ACACAGAAACGGATGTTCTATAACCACTGTTGCAATGGTGGTAAAATAAACTTGCCAGTGTATAAGCCGTGGCTGACTCC
TCTTGATCGGCTGGTTAGGTTTGGTGTAGGGAGTGAGTCGATGGAGTTTATGCAGTTGGTTAGGTCTTATAACAGCATGT
TTGCTTTTTC
>chr3D_666
--------------------------------------------------------------------------------
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--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
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--------------------------------------------------------------------------------
-------------------------AAATTATATAATTCATTCACGTAATTTTGCAGTATGGTGAAATAAATTTTG----
-TTTGCTGCTTGATTTTGTTTGGACACATAGAAAACATTGTTTTAGTCTGGTATGAACCAAATTTTGTGACACACATCAT
TTTTCCGT-------TGTAATAGAAATACTATTTATTTGTTTCCGTTT---TAGGAAGTGTAAATTGTAGCAG-------
-----------------------------------------------------------AGGAATAAAC-AAAAGAACTC
ACAAACCCTAAATCCAGATCTATCCCCTCCGACCTAGGCTATGGCTTCCATCGTGTCCAGGCTCGCGCGGGCAGCCTCTG
CAACCCGCGCCTCTCCGCCAGCCGTTGGAGGTACTGCTGGCGGCGGTCGCCCTGCAGCCGCCATCCGTGTCTCTGCTGCA
GGTAATCCCAAAGGAGTTCTTCTTATTT-CGATACGAGTGCTTCAGACTTTGGGTATACTTTCTTTCTTATCATCAGTAG
ATATATCTGAATAAACAGGCAGAG-ACTGGACCTTATTCATTAGGAGTTGTTCTAATCACCACACTTCTAACAAGCATGT
TG-TTTGATTTAGTAATACCAACTGGTAATTTGTTATAATAGCGAGCTCTGCCTTGCAAGGCTCAATCAATCAAATTAAC
TCTGCTGAGACTGAGAGCG-TAGTCCAAATGATTGTATTATCCACAAATTAAATTGTAACTCTATC--CTTACTCAATAA
CAGGAGGCCTCAAGTCAGAAGA---TGAAGAAGAGGAGGAGAAAGTTAGACCCAAGTCACAAGTAGCTCCAGATGACGCA
CCCAGACGTCGCCCTCTCCTT-GTTGATGAGAATGCACTAACGTCTGATGAAGCCATGTGGGCCTTCTATGAGCACTGGT
GCAAGTTTCATGGCATATCACGTGACCGTTCTGAGATGGAACGCCAGTTCAAGACATTTAGTGATACCGCAAGGCTTGTG
CACAAGGTGAACAATTCTCTTGTGCATGGCGAGTTGGCGATGAGCAAATTTGCAGATCGGACCAAGAAGGAGATGTCTCG
TCCTAGCCTAGGATCTAGGCGCACAAAAAAATGATCTCATCCCTTTATGATGTACTCTTGTGTGACCCTTAAGCCACAAG
TTATGCTTCTCTTGTGATCCAAGACATGCCTC----TAATTTCTAGCAGTAATGTGTGTC----------------TCAT
TTTAGCTTTGGTATAAGCCTGTATCTGCGTGTATATTGGACAAG-AGTATCTTTCGCTTTGTTGTATGAGCTCATTTAGC
TTTAATAAATGCTACATTTTCTGTATCTGCTCCGTT-GTGCCTTTTGGTGCCGAATTATAATTGCACTCTTGGTCAACTT
GAGGCAGACGT--TTTTTTAA-TGTTAAATACAGATCATTCTTAATGCTAGACGCCACC---------------------
--------------------------------------------------------------------------------
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----------
>chr3B_952
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-----------------------------------------------------------------------AAAGAACCT
GCAAACCCTAAATTCAGATCTATCCCCTCCGACCTGGGCTATGCCTTCCATCGTGTCGAAGCACGCGCGGGCGGCCTTTG
CAACCCGCGCCTCTCCCTCAGCTGTTGGAGGCATTGCTGGTGGCGGTCGCCCTGCAGCCGCCATCCGTGTCTCCCCTGCA
GGTAATTCCAAAGCAGTTCTTCTTGTTT-TGATACGAGTACTTCAGAAATTGGGTATAAT---TTTCTTATTATCAGTAC
ATATATCTGAATAAACAGGCAG-G-ACTGGACCCTATTCATTAGGAGTTATTCTAATCACCACACTTCTAACAAGCATGT
TG-TTTGATCTAGTAATACCAACTGACAATTTGTTATAATACCGAGCTCTGCCTTGCAAGGCTAAATCAATGAAATGAAC
TCTGCTGAGACTGAGAGCAATAGTACAAATGATCGTATTTTCCACAAAGCAAATTGTAACTCTATTTGCCTACTCAACGA
CAGAAGGCCCCAAATCAGAAGAAGG---A---------GAGAAAGCCAGACCCAAGTCACAAGTAGCTCCAGATGACGAA
ATCATACACCCCCATCTCGCT-GTTGATGAGAATGCACTTAAGTCCGAGGAAGCCATGTGGGCCTTCTATGAGCACTGGT
GCAAGTTTCATGGCATTTCGCGTGACCGTCGTGAGATGGAACGCCGGTTCAAGACATTTAGCGATACCGCAAGGCTTGTG
CACAAGATCAACAATTCTCTTGTGGATGGCGAGTTGTCGATGACCAGATTTTCAGACCAGACCAAGGCGGAGAGGTCTTG
TCGTTCACTAGGATATAGGCGCACAAAAAAATGATCTCCGCCCTTGCTGATGTACTCTTGTGTGCCCCTTAAGCCCTAAG
TTATGCTTCTGTATA---CCAAGACAGGCCTC----T----TCTAGCAGTAACGTGCGTCGCTCTGTTGTATGAACTCAT
TTTAGCTTTAATAAAAGCCTGTATCTGCGTGTGCATTGGACAAGTC-TATCTTTGGCTTTGTTGTTTGAGCTCATTTAGC
TTTAGTAGATGCTATA-TTTCTGTATCTGCTCC---------TTTTGGTGCAAAATTATAGTTGTACTCCTGGTCAACTT
GGCAGACGGTTTCTTTTTTTA-GGTTAAATACAGATCATTCTTAATACTATACACCACCAAATTTGCTAGCGTATAACCA
AAGGCATTTAT----ATGACTCCCTGCAGCAAATGAGAACATGTATGCAGCAAAAGGAGAAACAATGTTCTCGTTTGCTG
ACTTTGATTGGTTCTTCCTTGCAGCAAATGAGAACATTGTTTCTCCTTTTTGGTGCTACATTGTTCTCTGTTTGTTTCAT
TGGTTTCCTTTGTTTTGTTTTGCAGTGCAGCTTCTTTTCGTGGGAAGCTGTATCTTGGTGGCCCGGAATATACATGTTCT
TATGGCTGGGTTTTTTTTTGGGGGGTATAATGTGCGTGTTA---------------------------------------
--------------------------------------------------------------------------------
---------------------------------------------------------------CTCATTTTAGTGCATTT
ACACAGAAACGGATGTTCTATAACCACAGTTGCAAGTGTGGTAAAATACACTTGCCAGTGTATAAGCTGTGGCTGGCTCC
TC--GATCGGCTGGTTAGGTTTGGTGTAGGGAGTGAGTTGATGGAGTTTATGCGGTTGGTTAGGTCTTATAACAGCATGT
TTGCTTTTTC
>chr3D_952
--------------------------------------------------------------------------------
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-----------------------------------------------------------------------AAAGAACCC
GCAAACCCTAAATCCAGATCTGTCCCCTCTGACCTGGGCTATGCCTTCCATCGTGTGCATGCTCGCGCGGGCGGCCTTTG
CAACCCGCGCCTCTCCCTCAGCTGTTGGAGGTATTGCTGGTGGCGGTCGCCCTGCAGCCGCCATCCGTGTCTCCCCTGCA
GGTAATTCCAAAGGAGTTCTTG----TTTCGATACGAGTATTTCTGAATTTGGGTATAC----TTTCTTAGTATCAGTAC
ATATATCTGAATAAACAGGCAG-GGATTGGATCCTATTCATTAGGATTTGTTCTGATCACCACACTTCTAACAAGCATGT
TG-TTTGATTTAGTAATACCAACTTATAATTTGTTATAATAGCGAGTTCTGCCTTAGAAGGCTCAATCAATCAAATTAAC
TCCGCTGAAACTGAGAGCT-TAGTTCAAATGATTGTATTATCCACAAATCAAATTGCAACTCTACC--CTTACTCAACGA
CAGGAGGCCTTAAGTCAGAAGATGATGAA---GAGGAGGAGAAAGCCAGGCCCAAGTCACAAGCAGCTCCAGATGACGCA
CCCAGACGTCGCCATCTCGCT-GTTGATGAGAATGCACTAACGTTCGATGAAGACATGTGGGCCTACTATGAGCACTTTT
GCAAGATTCATGGCATATCGCGTGACCGTCGTGAGATGGAACTCCCGTTCAAGAAATTTAGTGATGTCGTAAGGCTTGTG
TTCAAGATCGACAATTCTGTTGTGGATGGCGAGTTGTCGATGACCAGATTTTCAGATCAGACCAAGGCGGAGAGGTCCTG
TCGTTCACTAGGATATAGGCGCACAAACAAATGATCTCCGCCCTTGCTGATGTACTCTTGTGTGCCCCTTAAGCCCTAAG
TTATGCTTCTGTATA---CCAAGACATGCCTCTAAGT----TCTAGCAGTAACGCGCGTCGCTCTGTTGTATGAACTCAT
TTTAGCTTTAATAAAAGACTGTATCTGCGTGTGCATTGGACAAGTAGTAACTTTGGCTTTGTTGTATGAGCTCATTTAGC
TTTAATAGATGCTATA-TTTCTGTATCTGCTCCGTTTGTGCCTTTTGGTGCAGAATTATAA---TACTCCTGGTCAACTT
GGCAGACGGTTTCTTTTTTTA-GGTTAAATACAGATCATTCTTAATACTAGACACCACCAAATTTGCTAGCATATAACCA
AAGGCATTTATATATATGACTCCTTGCAGCAAATGAGAACATGTATGCAGCAAGAAGCGAAACAATGTTGTCGTTTGCTG
ACTTGGATTGGTTCTTCGTTGCAGCAAATGAGAAGATTGTTTATCCTTCTTGGTGTTGCATTGTTCTCTGTTTGTTTCAT
TTGTTTCCTTTGTTTTATTTTGCGGTGCTGCTTCTTTTCGTGGGAGGATGTATCTTGGTGGCCCGGAATATACATGTTCT
TATCGCTGGGTTTTATTTT--GGGGTATAATGTGTGTGTTA---------------------------------------
--------------------------------------------------------------------------------
---------------------------------------------------------------CTCATTTTAGTGCATTT
ACACAGAAACGGATGTTCTATAACCACTGTTGCAAGAGTGGTAAAATACACTTGCCAGTGTATAAGCCGTGGCTGGCTCC
TCTTGATCGGCTGGTTAGGTTTGCTGTAGGGAGTGAGTCGATGGAGTGTATGCGGTTGGTTAGGCCTTATAACAGCATGT
TTACTTTTTC
>chr3A_961
--------------------------------------------------------------------------------
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ACAAACCCTAAATACAGATCTATCCACTCCGACCTAGACTATGGCTTCCATCATGTCCAAGCTCGCGTGGGACGCCTTGG
CAACCCGCGCCTCTCCCTCAGCAGTTGGAGGTATTGCTAGTGGCTGTCGACCTGCAGCCACCATCCGTGTTTCCCCTGCA
GGTAATCCCATAGGAGCTCTTA----TTTCAATACAAATACTTTAGAATCTGGGTATAA----TTTCTTATTACTAGTAG
ACATATCTGAATAAACAGGCAG-GGATTGGACCCTATTCATTAGGTGTTATTCTAATCACCACACTTCTAACAAGCATGT
TG-TTTGATATAGTTATATCGACTGATAATTTGTT-----------------CTCGCAAGGCTAAATCAATCAAATTAGC
TCTGCTGAGACTGAGAGCAATAGTACAAATGATCGTATTTTCCACAAATCAAATTGTAACTCTATT--CCTACTCAACTC
CAGGAGGCCCCAAGTCAGAAGGAGAAGAA---------GAGAAAGCCAGACCCAAGTCACAAGTAGCTCCAGATGACGAA
ATCATGCATCCCCATCTCGCT-GTTAATGAGAATGCACTTAAGTCCGACGAAGCCATATGGGCCTTCTATGAGCAATGGT
GCAAGTTTCATGGCATATCGTGGGACCGCACTGAGATGGAACGTCGGTTCAAGATATTTAGTGATACCGCAAGGCTTGTG
CACAAGATGAACAATTCTCTTGTGGATGGCGAGTTGTCAATGACCAAATTTTCAGATCGCACCAAGGAGGAGAGGTCTCG
TCT---ACTAGGATCTAGGCGCACAAAAAAGTGACCTCACCCCTTTCTGATGCACTCTTGTGTGGCCCTTAAGCCCTAAG
TTATCAATCTCTTATGATCGAAGACATGCCTTTG-----------GCAGTAATGTGTGTCGCTCTGTTGTATGAACTCAT
TTCAGCTTTAATATAAGCTTGTATCTGTGTGTATACTGGATAAGTAGTATCTAACACTTTGTTGTATGAGCTTATTTAGC
TTTAATAAATGCTATATTTTCTATATCTGCTCTT-------------GTGCAGAATTCTAATTGCACTCCTGGTCAACAT
AGCAGATGGTTTGTTATTTTA-GGTTAAATACATATCATTCTTAATACTAGA----------------------------
--------------------------------------------------------------------------------
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----------
>chr3A_1262
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-----------------------------------------------------------------------CAAGCATGT
TG-TTTGATTTAGTAATACCAACTTATAATTTGTTATAATAGCGAGTTCTGCCTTGCAAGGCTCAATCAATCAAATTAAC
TCTGCTGAAACTGAGAGCG-TAGTTCAAATGATTGCATTATCAACGAATCAAATTGTAACTCTATC--CTTACTCAACGA
CAGGAGGCCTCAAGTCAGAAGATGATGAA---GAGGAGGAGAAAGCCAGGCCCAAGTCACAAGCAGCTCCAGATGACGCA
CCCAGACGTCGCCATCTCGCT-GTTGATGAGAATGCACTAACGTCCCATGAAGACATGTGGGCCTACTATGAGCACTTTT
GCAAGATTCATGGCATATCGCGTGACCTTCGTGAGATGGAACTCCCGTTCAAGAAATTTAGTGATGTCGTAAGGCTTGTG
TTCAAGATCGACAATTCTGCTGTGGATGGCGAGTTGTCGATGACCAGATTTTCAGATCAGACCAAGGCGGAGAGGTCCTG
TCGTTCACTAGGATATAGGCGCACAAAAAAATGATCTCCGCCCTTGCTGATGTACTCTTGTGTGCCCCTTAAGCCCTAAG
TTATGCTTCTGTATA---CCAAGACATGCCTCTAAGT----TCTAGCAGTAACACGCGTCGCTCTGTTGTATGAACTCAT
TTTAGCTTTAATAGAAACCTGTATCTGCGTGTGCATTGGACAAGTAGTAACTTTGGCTTTGTTGTATGAGCTCATTTAGC
TTTAATAGATGCTATA-TTTCTGTATCTGCTCCGTTTGTGCCTTTTGGTGCAGAATTATAA---TACTCCTGGTCAACTT
GGCAGATGGTTTCTTTTTTTA-GGTTAAATACATATCATTCTTAATACTAGACACCACCAAATTTGCTAGCATATAACCA
AAGGCATTTATATATATGACTCCTTGCAGCCAATGAGAACATGTATGCAGCAAGAAGTGAAACAATGTTGTCGTTTGCTG
ACTTGGATTGGTTCTTCGTTGCAGCAAATGAGATGATTGTTTCTCCTTCTTGGTGTTGCATTGTTCTCTGTTTGTTTCAT
TGGTTTCCTTTGTTTTATTTTGCGGTGCTGCTTCTTTTCGTGGGAGGATGTATCTTGGTGGCCCGGAATATACATGTTCT
TATCGCTGGGTTTTATTTT--GGGGTGTAATGTGTGTGTTA---------------------------------------
--------------------------------------------------------------------------------
---------------------------------------------------------------CTCATTTTAGTGCATTT
ACACAGAAACGGATGTTCTATAACCACTGTT--------------ATACACTTGCCAGTGTATAAGCCGTGGCTGGCTCC
TCTTGATCGGCTGGTTAGGTTTGCTGTAGGGAGTGAGTCGATGGAGTGTATGGGGTTGGTTAGGCCTTATAACAGCATGT
TTACTTTTTC
>SNPs
------------------S---------S---------------------------------------------------
------------------------S-------------------------------------------------------
--------------------------------------------------------------------------------
-----------------------------------------------S--------------------------------
-------S---------------------------------S--------------------S-----------------
--------------------------------------------------------------------------S-----
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
----------------S----------------------------------------------S-S--------------
-------------------------------S---------------S--------------------------------
--------SS-----------------S------------------------------------------S---------
--S-S---------------------------S----------S---------------------S--------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
----S---------------------------------------------------------------------------
-------------------------------------------S------------------------------------
------------------------------------------S-------------------------------------
----------------------------------------------------------------------------S---
--------------------------------------------------------------------------------
------------------------------S-------------------------------------------------
-------------------------------------S------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
---------------------S----------------------------------------------------------
--------------------------------------------------------------------------------
------------------S-------------------------------------------------------------
----------------------------------------------------------------S---------------
------------------SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS-----------------
--------------------------------------------------------------------------------
------------------------------------------------------S-------------------------
---S------
>forward_29
--------GGACTTCCTGTAACACCCACA---------------------------------------------------
--------------------------------------------------------------------------------
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----------
>reverse_1631
--------------------------------------------------------------------------------
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--------------------------------------------------------------------------------
------------------------------TTGAGATGGAACGCCGGTTC------------------------------
--------------------------------------------------------------------------------
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--------------------------------------------------------------------------------
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--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
----------
>forward_475
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
----------------------------------------------------GGCCCAGAGGGTATCTATTCATC-----
--------------------------------------------------------------------------------
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>reverse_2259
--------------------------------------------------------------------------------
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------------------ATGCAGCAAATGAGAACATTGT----------------------------------------
--------------------------------------------------------------------------------
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----------
