>input_sequence_69340
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-------------------------------------------------------------------GAATATAGGGAGT
AAATACTGTGTGAGCCAAGATCTCAAAGATGAACAAGGGGAAGATTTTTAAGTTAGCCAAGGGATTCCGAGGAAGGGCTA
AAAACTGCATAAGAATCGCCAGGGAGCGTGTAGAAAAAGCATTGCAATATTCATACAGGGATCGGCGCAACAAGAAAA-G
GGACATGCGGTCTCTCTGGATCGAGCGCATCAATGCTGGTACACGACTCCATG---------------------------
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------------------------------------------GGGTATGTAGTATCTATTTACATTCAAGGTTTGACGAT
GAAATGAAATTTGTTGCATTCTCATGTTAAATT-TTTTTCCC--AAAGAAACCAAGCAGAATACGATAACAAAG------
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---------------------------------------------------------TATAAGCTACCGGGTTTCTAGTT
TTGCTACTGTA---CGCACACACAC--ACATGTGTCTGATGTATTGTCTGAACTTACTGCCCAGGTGAACTA-TGGCAAC
TTCATGCATGGACTGATGAAGGAGAACGTCCAACTCAACAGGAAGGTACTTTCGGAGCTGTCGATGCATGAGCCATACAG
CTTCAAGGCCCTCGTTGATGTATCCCGCACTGCATTCCCTGGGAACAGGCCGGCTGCCAAGAAGGAAGGACTAGCAAGCA
TTCTATAAACAATTCATTCCTCGACAATTCAG--------TCTAC--------------TGTGATGAA------------
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--------------CTCATGTGATGGGGGTATGTATCACATCACGTTTTAGTCCATGTCATTCGGTCTGTTGGCCTGCTG
AA-CAGAGGGTACATGTACTGTACTTTTGCACTTCTTTCTTCAGATAATGTGCTCTGTTTACCGTCA-------------
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>chr1B_1_TraesCS1B01G362900
CGCCGGATAGTGTCGGATTGGCTGGAAATGATTCTTTGTCGGTGGCAGGATTTGAATTAGCAAGCAGATCACACATTTGC
ACCATCTACTGCTGCTTGCATTTGCTATAATTTTCACGTTATTTTTTAATCTGACGGCCAATTCCAAGTGGAAACTGTCG
ATTGGAATACAGTACTACACAGTACCCGATCCTATTTTAGCGCAATTTTTTTT-CATCTCTGGTAGACACTAAACA----
AGCACATAT-----------------------------------------------------------------------
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---------------------CCAGTTTTAACATTCATTTTGTCA-------TAGACGAGAATGGGAAA--GGCGAAAGT
AACTTTGGATCCTATGACCCATATAGTTTTTCTTGATGTGCGTATCGAAGAAGTACATGTATATAACCGTCCCACCAGAT
GTTTGAACTTACTTGGGTATGTTTATTTGATAAGCAAGTTTAGTGAGCACACAAAGAGAAATTATGAGTGTAAGCGATTC
AAAAA-TAGGTGGAGTCATTCAAAACAGACTGTCGGCACAGTTCATGATGCTATTGCTGCTAGTGTCGTACCTTGATGAT
TAGTTTTTATCGTGACTGCTTTTCTTGGGGGAAACCCTTGTAATGCCTTCACAACCTCTTTTTATCTAACTTGTTGTCAA
GTACAAATTACATCTTATTTTTGTTGTATTATTTATTTTATAATGTTAATAATATCTATGATAAACACAGCAAGAAATTA
CACAATATAATTTAAG----------------------------------------------------------------
-----------------------------------------------------------------------------ATT
CACATAATTACAGTCCATGGACTTTTCATCAGAAAATAAAATAAACTAAGGGGCAGAATAACTGATACTTACAGTCTATA
GACTTCTCTATGCCGCAGCTCCTGTGGGTAGAGAAGCTTAAACTGGTTCCTGAAGAAGTCTAGGC-TGAAAATAACTGTC
CTTAAGTATGTTTTATTCATATGCATTCCCTTCTCGAGGAATA---AATGTCTGAAGTATTGGCGTGTAC----------
-----TCTGAACTTCTATTTCATTACAGTAATTCATAATTTGCTCCAATTTCTTACTTTGATGTTGTGAATATAGGGAGT
AAATACTGTGTGAGCCAAGATCTCAAAGATGAACAAGGGGAAGATTTTTAAGTTAGCCAAGGGATTCCGAGGAAGGGCTA
AAAACTGCATAAGAATCGCCAGGGAGCGTGTAGAAAAAGCATTGCAATATTCATACAGGGATCGGCGCAACAAGAAAA-G
GGACATGCGGTCTCTCTGGATCGAGCGCATCAATGCTGGTACACGACTCCATG---------------------------
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------------------------------------------GGGTATGTAGTATCTATTTACATTCAAGGTTTGACGAT
GAAATGAAATTTGTTGCATTCTCATGTTAAATT-TTTTTCCC--AAAGAAACCAAGCAGAATACGATAACAAAG------
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---------------------------------------------------------TATAAGCTACCGGGTTTCTAGTT
TTGCTACTGTA---CGCACACACAC--ACATGTGTCTGATGTATTGTCTGAACTTACTGCCCAGGTGAACTA-TGGCAAC
TTCATGCATGGACTGATGAAGGAGAACGTCCAACTCAACAGGAAGGTACTTTCGGAGCTGTCGATGCATGAGCCATACAG
CTTCAAGGCCCTCGTTGATGTATCCCGCACTGCATTCCCTGGGAACAGGCCGGCTGCCAAGAAGGAAGGACTAGCAAGCA
TTCTATAAACAATTCATTCCTCGACAATTCAG--------TCTAC--------------TGTGATGAA------------
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--------------CTCATGTGATGGGGGTATGTATCACATCACGTTTTAGTCCATGTCATTCGGTCTGTTGGCCTGCTG
AA-CAGAGGGTACATGTACTGTACTTTTGCACTTCTTTCTTCAGATAATGTGCTCTGTTTACCGTCAATAAATCCAGTAG
AGCAGAAAGGTTT---TAAACCATGT-AAAAAACAAGATGTGGTTATTTTGGGCAGAAAGTTTTTCTAGCTTTCG-----
----------------TCTGAAGTCATGTAGAGTAGTCCTTATAAAGACATGCTGAATAGGCCGTACCATCTTGTTATCG
ACAACAGGCCATCCTTGAATAGCCACTGCGTGTTGATTTGTACTCCCTCCGTTCGGAATTACTCGTCCAAGAAATGAATG
TATCTAGATGTATTTTAGTTGTAGATACATTCATTTTTATCCATTTTATGACAAGTAATTCCGAACGGAGGGAGTATTAT
GTTGCACAAAACCCTGGCCCTTCTCGCTGGCAATATTTCATGCATGGCTCTGCAGTTCTGTTTATTCAT---TTAC----
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--------ATCCTTAT-CATGCCCGCCTCTGTAACCCTGCTGTTTTGA---ACTTCTCCCTTCTCCTGATGGGCGCTGTA
TC------------------------------------------------------------------------------
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-------------------------------------------------------------------------AGCAGCC
AGATTATTGA----------TCAAACTGATGTTATCATGAT---------AATGGTGTGGCTGGGAGCGATCTTCTCCAG
GCATCGTT----AGTATGGCTGATTTGAAAACAAGTTAGTAAAT------------------------------------
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--------------------------------------------------AGTACTACCAAAAGATGCAGGCAGAAAATA
GTTGGAAACAAATTCTAC-TGAAGTCTAAAACAAGTTGTACTGGCAGAAAATGCTCAGATGGTTCCAAGTTCACTC----
----ACACTTGAGACTTAACCCACACGAGGGTTCAACAGTTGTACTGGAGTCTCAACAGGTCCATACACACATAAAG---
---------------------------GTATATCAAAGCAAACTTCAGCACACATCGCCG----TCCCA----A------
--------------ATTCACGCACGGCTGCCGTCAGTTGTCGACCTGAGCCGCTCCGCCGGTGACCGGGATGCCGGGGCT
GGCGCCGGCGCC------GTTGTTGGTCACC---------------------GCCCGCCC------------------CT
TCTCCTCGGCGAGACGG---GCTCTGCGCCAGTGGTCCCTGGTGTAGATGTGATTGATCATGCCGCGCTTGTCACAGCCG
TGCACGCCACACAGGCCGCACGAGAGGCTGTCGTCCGCCTGGCGCA
>chr1A_6
-----GATAGTGCGGGATTGGTTGGAAATGATTCTTTGTTGGTGGCGG---TTGAATTAGCAAGCAGATCACACATTTGC
AACATCTACTGCTGCTTGCATTTGCTATAATTTTCACGTTATTTTTTAATCGGACGGCT---------------------
-----AATTCAGTAGTATGCAGTACCCGGTCCTTTTTGAGCGCAA-TTTTTTT-CATCTCTGGTAGTCACTAAACAAATG
AGCACATAT-----------------------------------------------------------------------
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---------------------CCAGTTTTAACATTCATTTTGTCACATATCATAGATGAGAATGGGAAATGGGGGAAAGT
AATGATGGATCCTATGACCTGTATAGTTTCTCTTGATGTGCGTATCGAAGAAGTACATGTAAATAACTGTCCCACCTGAT
GTTTGAACTTACTTGGGTATGTTAATTTGATAAACAAGTTCAGTGAGCGCACAAAGAGAAATTATGAGTGTAAGCGATTC
A-AAA-TAGGTGGAGTCATTCAAAACGGACTGTCGGCACAGTTCATGATGCTATTGCTGCTAGTGTCGTACCTTGATGAT
TAGTTTTTATCGTGACTGCTTTTCTTGGGGGGAAACCTTGTAATGCCTTCACAACCTCTTTTTATCTAACTTGTTGTCAA
GTACCAATTACATCTTATTTTTGTTGTAATATTTGTTTTATGATGTTAATAATATCTATGATAAACACAGCAAGAAATTA
CACAATATAAGTTAAG----------------------------------------------------------------
-----------------------------------------------------------------------------ATT
CACATAATTACAGTCCATGGCCTCTTCATCAGAACATAAAATAAACTAAGGGGCAGAATAACTGATACTTACAGTCTATA
GACTTCTCTATGCCACAGCTCTTGTGGGTAGAGAAGCTTAAACTGGTTCCTGAAGAAGTCTAGGT-TGAAAATAACTGTT
CTTAAGTATGTTTTATTCATATGCATTCCCTTCTCGGGGAATA---AATGTCTGAAGTATTGGCTCCAACTTCTCTATGT
TTTATTCTGAACTTCTATCTCATTACAGTAATTCATAATTTGCTCCAACTTCTTACTTTTATGTTGTGAATATAGGGAGG
AAATACTGTGTGAGCCAAGACCTCAAAGATGAACAAGGGGAAGATTTTTAAGTTAGCCAAGGGATTCCGAGGAAGGGCTA
AAAACTGCATAAGAATCGCCAGGGAGCGTGTAGAAAAAGCATTGCAATATTCTTACAGGGATCGGCGCAACAAGAAAA-G
GGACATGCGGTCTCTCTGGATCGAGCGCATCAATGCTGGTACACGACTCCATG---------------------------
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------------------------------------------GGGTATGTAGTATCTATTAACATACGAGGTTTGACAGG
GAAATGA-GTTTGTTACATTCTCATGTTA---T-TTTTTTCC--GAAGAAACCAGGCAGAATACGATAACAAAGCAGGGA
CAGAGCTACCTTGTAAGCAATGGGGTCAATTGACCCCAATGAAATTAGTAAATCCTTCACTAATTTAGTACTAATCATTA
CTCATTTATAGAAGATGACCCCACTGTCATAAACCTGACCCCATCAATTTTTTTCTAGCTTCGTCCCTGTAACAA-----
------------------------------------------------AG-------TATAAGTTATCGGGTTTCTAGTT
TTGCTACTGAA---CGCACACG--C--ACATGTGTTTGATGTATTGTCTGAACTTACTGCCCAGGTGAACTA-TGGCAAC
TTCATGCATGGACTGATGAAGGAGAATGTCCAACTCAACAGGAAGGTACTTTCGGAGCTGTCGATGCATGAGCCATACAG
CTTCAAGGCCCTCGTTGATGTATCCCGCACTGCATTCCCTGGGAACAGGCCGGCTGCCAAGAAGGAAGGACGAGCAAGCA
TTCTATAAACAATTCATTCCTCGACAATTCAG--------TCTAC--------------TGTGATGAA------------
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--------------CTCATGTGATGGGGGTATGTATCACATCACGTTTTAGTCCATGTCATTCGGTCTGTTGGCCTGCTG
AA-CAGAGGGTACATGTACTGTACTTTTGCACTTCTTTCTTCAGATAATGTGCTCTGTTTACCGTCAATAAATCCAGTAG
AGCAGAAAGGTTTTAATAAACCATGTAAAAAA--AAGATGTGGTTATTTTGGGCAGAAAGTTTTTCTAGCTTTCA-----
----------------TCTGAAGTCATGTA--GTAGTCCTTATGAAGACATGCTGAATAGGCTGCACCATCTTGTTATCG
AGAACAGGCCATCCTT-AATACCCACTGCGTGTTGATTTGTGTTGCACATT-----------------------------
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-----------CCCTGGCCCTTTTCGCTGGCAGTATTTCATGCATGGCTCTGCAGTTCTGTTTATTCAT---TTACTCTC
CCCCGTTCCTAAATATAAGTCTTTGTAGAGATTCCACTGTGGACTACATACGGAGCAAAATGAGTGAATCTACACTCTAA
AATGCATCCACATACATCTGCATGTTGTCCATAGCGAATTCTCTACAAAGACTTATATTTAGGAATGGAGGGAGAATGGA
GGGAGTACATCCTTTTGCATGCCTGCCTTTGTAACCCTGCTGTTTTGA---AGTTCTCCCTTCTCCTGATGGGCGCTGTA
TC------------------------------------------------------------------------------
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-------------------------------------------------------------------------AGCAGCC
AGATTATTGA----------TCAAACTGCTGTTATCATGAT---------AATGGTGTGGCTGGGAGCGATCTTCTCCAG
GCATCGTTTGCTGGTATGGCTGATTTGAAAACAAGTTACTCCCTCCGTCCCATAATATAAGAACGTTTTTGACACTAGTG
TAGTGTCAAAAATATTCTTATATTATGGGACGGAGGGAGTAGTAAATAGTACTCCCTCCGTAAAGAAATATAAGAGTGTT
TAGATCACTAATGTAGTGATCTAAACACTCTTATATTTCTTTACGGAGGGAGTACTACCAAAAGATGCAGGCAGAAAATA
GTTGGAAAGAAATTGTAC-TGAAGTCTAAAACAAGTTGTACTGGCAGAAAATGCTCAGATAGTTCCAAGTTCACTC----
----ACACTTGAGACTTAACCCACACGAGGGTTCAACAATTGTACTGGAGTCTCAACAGGTCCATACACACATACAGTCT
CAACAGGTCCATACACACATAAAGGTAGTACATCACAACAAACTTCAGCACACATCGCCG----TCCCA----A------
--------------ATTCACACACGGCTGCCGTCAGTTGTCGACCTGAGCCACTCCGTCGGTGACCGGGATGCCGG----
--------CGCCAGTGCCGTCGTTGTTCAC---------------------CGCCCGCTT------------------CT
TCTCCTCGGCGATACGG---GCTCTGCGCCAGTGGTCCCTTGTGTAGATGTGATTGATCATGCCGCGCTTGTCACAGCCG
TGCACGGCACACAGGCCGCACGAGAGGCTGTCGTCCGCCTGGCGCA
>chr1D_6
-----GATAGTGCGGGATTGGTTGGAAATGATTCTTTGTTGGTGGCAGGATTCGAATTAGCAAGCAGGTCACACATTTGC
AACATCTACTGCTGCTTGCATTTGCTATAATTCTCACGTTATTTTT-AATCTGACGGCTAATTCCAAGTGGAAACTGTCG
ATTGGAATACAGTAGCATGCAGTGTCCGGTCCTATTTGAGCGCAA-TTTTTTTCCATCTCTAGTAGACACTACACAAATG
AGCACATATATTTGTTAGTACCTCTGTTGACGTTTTTGCAGCTCAAATTGAATTGAACTGCAAAAACGTCTTATATTCAG
GAACAGAGGATGTGGTAAGCAATTTTTTATCGCAGGAATTACTCTCGTTGATTGTATGTTCTAAAAACAGGGCACACTTT
TTGTTGACCCAAAAACAATATCCAGTTTTAACATTCATTTTGTCACATATCATAGATGAGAGTGGGAAATCGGCGAAAGT
AACTTTGGATCCTATGACCCATATAGTTTTTCTTGATGTGCGTATCGAAGAAGTACATGTATATAACCGTCCCACCAGAT
GTTTGAACTTACTTGGGTATGTTTATTTGATAAGCAAGTTTAGTAAGCACGCAGAGAGAAATTATGAGTGTAAGCGATTC
A-AAAATAGGTGGAGTCATTCAGAATGGACTGTCGGCACAGTTCATGATGCTATTGCTGCTAGTGTCGTACCTTGATGAT
TAGTTTTTATCGTGACTGCTTTTCTTGGGGGAAACCCTTGTAATGCCTTCACAACCTCTTTTTATCTAACTTGTTGTCAA
GTACCAATTACATCTTTATTTTGTTTTAATATTTATTTTATGATGTTAATAATATCTATGATAAACACAGCAAGAAATTA
CACAATATAAGTTAAGGCGCTGTTCGGCAGTCCGCCCGCTCCGTAAAAATTGAGAATCTCGGGAGTACCGTTTCGCTGGC
TCTGCACTTTTTAACTAGAACTCCGTCAGCTCCGGGAGCGGCCTCGCTGAGCGGAGGGGCTCCGAACAGGCCCTAAGATT
CACACAATTGCAGTCCATGGACTTTTCATCAG-----AAAATAAACTAAGGGGCAGAAGATCTGACACTTACAGTCCATA
GACTTCTCTGTGCCGCAGCTCCTGTGGGTAGAGAAGCTTAAACTGGTTCCTGAAGAAGTCTAGGCCCGAAAATAACTGTC
CTTAAGTACGTTTTATTCATATGCATTCCCTTCTCGGGGAATA---AATGTCTGAAGTATTGGTGTGTAC----------
-----TCTGAACTTCTATCTCACTACAGTAATTCATAATTTGCTCCAATTTCTTACTTTGATGTTGTGAATATAGGGAGG
AAATACTGTGTGAGCCAAGAGCTCAAAGATGAACAAGGGGAAGATCTTTAAGTTAGCCAAGGGATTCCGAGGAAGGGCTA
AAAACTGCATAAGAATCGCCAGGGAGCGTGTAGAAAAAGCATTGCAATATTCTTACAGGGATCGGCGCAACAAGAAAA-G
GGACATGCGGTCTCTCTGGATCGAGCGCATCAATGCTGGTACACGACTCCATG---------------------------
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------------------------------------------GGGTATGTAGTATCTATTTACATTCAAGGTTTGACAAT
GAAATGA-ATTTGTTGCATTCTCATGTTA---A-ATTTTTCCCCAAAGAAACCAAGCAGAATACGA--------------
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---------------------------------------------------------------------TAACAA-----
------------------------------------------------AG-------TATAAGTTATCGGGTTTGTAGTT
TTGCTACTGTA---CGCACACG--C--ACATGTGTTTGATGTATTGTCTGAACTTACTGCCCAGGTGAACTA-TGGCAAC
TTCATGCATGGACTGATGAAGGAGAATGTCCAACTCAACAGGAAGGTACTTTCAGAGCTGTCGATGCATGAGCCATACAG
CTTCAAGGCTCTTGTTGATGTATCTCGCACTGCGTTCCCTGGGAACAGGCCGGCTGCCAAGAAGGAAGGACTAGCAAGTA
TTCTATGAACAATTCAGTCCGCCGGTTG---------------AAACCTACCAAAGCCTTGTGATGAA------------
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--------------CTCATGTGATGGGGGTATGTATCACATCATGTTTTAGTCCATATTATTCGGTCTGTTGGCCTGTTG
AA-CA--------------------------CTTCTTTCTTTGGATAATGTGCTCTGTTTACCGTCAATAAATCCAGTAG
AGCAGAATGTTTT---TAAACCATGT-AAAAGAAGAGATCTGGTCTTTTTGGGCAGAAAGTTTTTCTTGCTTTTA-----
----------------TCTGAAGTCAT-----GTAGTCCTTGTGAAGATATGCTGGATAGGCCACACCATCTTGTTAT--
------GGCCATCCTTGAATAGCTACTGCCTGTTGATTTGTATGCGCA--------------------------------
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----------------------------------------------GCTCTGCAGTTCTGTTCATTTAT---TTAC----
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--------ATCCTTTTACATGCCTGCCTCTGTAACCCCACTGCTTAGG---ACTTCTCCCTTCTCCTGATGGGTGCTGTA
TCTCCC--------------------------------------------------------------------------
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--------------------------------------------------------------GGGGATCTTTCAGCAGCC
AGAAGCTACTATTCTTGAGTTCAAACTGCTGTTATCATGATATGTAGAGAAATGGCAAGGCTTGGAGCGATCTTCACCAG
GCATCGTTTGCTAGTATGGCTGATTGGACAACAAGTTAGTAAAC------------------------------------
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-----------------------------------------------------ACTACCAAAAGATACTGGAAGAAAATA
GTTGGAAAAAAATTGTAC-TGAAGTCTAAAACAAGTTGTACTGGCAGAAAATGCTCAGATAGTTCCAAGTTCACTC----
----ACACTT-------AACCCACACGGGGGTTCAACAGTTGTACTGGAGTCTCAACAGGTCCATACACACATAAAG---
---------------------------GTACATCACAACAAACTTCAGCACACATCACCG----TCCCA----A------
--------------ATTCACGCACGGCTGCCGTCAGTTATCGACCTGAGCCGCTCCGTCGGTGACCGGGATGCCGG----
--------TGCC------GGCGTTGTTCACT---------------------GCCCGCCC------------------CT
TCTCCTCGGCGATACGG---GCTCTGCGCCAGTGATCCCTGGTGTAGATGTGATTGATCATGCCGCGCTTGTCACAGCCG
TGCACGCCACACAGGCCGCACGAGAGGCTGTCGTCCGCCTGGCGCA
>chr1B_821
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----------------------------TATAGAAGCTTAAACTGGTTCCTAGAGAAGTCTAGGC-CGAAAATAACTGTC
TTTAAGTACGTTTTATACATATGCATCTCCTACTGAGGGAATAAATAATGTCTTAAGTATTTGCGTGTAC----------
-----TCTGAACTTCTATCTCACTGCAGTAATTCATAATTTGCTCCATTTTCTTACTTTGATGTTGTGAATATAGGGATG
AAATATTGTGTGAGTCAAGATCTCA---------------AAGATTTTTGAGCTAGCTAAGGGATTCAGAGAAAGGGCTA
AAAACTGCATTAGAATTGCCAGGGAGCGTGTAGAAAAGGCATTGCAATATTCGTATATGGATTGGCGCATTAAG-AAAAG
GGACATGCAATCTCTCTGGATCTAGCGCATCAATGCTGGTACACGACTCCATG---------------------------
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------------------------------------------AGGTATGTAGTATCTATTTACATACGAGTTTTGACAAG
GAAATGA-GTTTGCTGCATTCTCATGTTA---A-TTTTTTT-CTGAAATAAACAAGCAGAATACGA--------------
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---------------------------------------------------------------------TAACCA-----
------------------------------------------------AGTGGCAAATATAAGTTATCGGGTTTCTAGTT
TTGCTACTCTA---CGCACATACATGAACGTGTGTTTGATATATTGTCTGAACTGACTGCCCAGGTGAACTA-TGGCAAC
GTCAGGCATGGACTGATGAAGGAGAATGTCCAACTCAACAGGAAGGTGCTTTCGGAGCTGTAGATGCATGAGCCATACAA
CTTCAAGGCTCTCGTTGATGTATCTCGCACTGCATTCCCTGGGAACAGGCCGGCTGCCAAG-------------------
--------------------------------------------------------CCTTGCAATGAA------------
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--------------CTCATGTGATGGGTATATCATCAACTAGT-----------ATGTTATTCTATCTGTTAGCCTGTTG
AA-CAGAGGTTACATGAATTACCTGCT-----------------------------------------------------
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-------------------------GTTGGCAGTATTTCATGCATGGCTCTGCAGTTCTGTTCATTTAT---GTAC----
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--------ATCCTTTTACCTGCCTACCTCTGTAACCCTGCTGCTTTGA---ACTTCTCCCTTCTCCTGAT----------
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>chr1B_846
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-----------------------------------------------------AGAAGTCTAGGC-CGAAAATAACTGTC
TTTAAGTACGTTTTATTCATATGCATCTCCTATTGGGGGAATAAATAATGTCTTAAGTATTTGCGTGTAC----------
-----TCTGAACTTCTATCTCACTGCAGTAATTCATAATTTGCTCCATTTTCTTACTTTGATGTTGTGAATATAGGGATG
AAATATTGTGTGAGTCAAGAGCTCAAAGATGAAGAAGGGGAAGATTTTTAAGCTAGCTAAGGGATTCAGAGGAAGGGCTA
AAAACTGCATTAGAATTGCCAGGGAGCGTGTAGAAAAGGCATTGCAATATTCGTATAGGGATCGGCGCATTAAG-AAA-G
GGACATGCAATCTCTCTGGATCTAGCGCATCAATGCTGGTACACGACTCCATG---------------------------
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------------------------------------------AGGTATGTAGTATCTATTTACATACGAGTTTTGACAAG
GAAATGA-GTTTGTTGCGTTCTCATGTTA---ATTTTTTTT-CTGAAATAAACAAGCAGAATACGA--------------
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---------------------------------------------------------------------TAACCA-----
------------------------------------------------AGTGGCAAATATAAGTTATCGGGTTTCTAGTT
TTGCTACTGTA---CGCACATACATGAACGTGTGTTTGATATATTGTCTGAACTGACTGCCCAGGTGAACTA-TGGCAGC
ATCATGCATGGACTGATGAAGGAGAATGTCCAACTCAACAGGAAGGTGCTTTCGGAGCTGTAGATGCATGAGCCATACAA
CTTCAAGGCTCTCGTTGATGTATCTCGCACTGCATTCCCTGGGAACAGGCCGGCTGCCAAGAAGGAAGGACTAGCAAGTA
TTCTATAAGAAATTTCCCCATCGACAGTTCAG--------TCCAC--------------TGGCTACCGTTTCATCTCAAG
GTAACTGCTAAATGTTACCCCCCNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNCTCATGTGATGGGTATATCATCAACTAGT-----------ATGCTATTCTATCTGTTAGCCTGTTG
AAACAGAGGTTACATGAATTACCTGTT-----------------------------------------------------
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-------------------------GCTGGCAGTATTTCATGCATGGCTCTGCAGTTCTGTTCATTTAT---TTAC----
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--------ATCCTTTTACCTGCCTATCTCTGTAACCCTGCTGCTTTGA---ACTTCTCCCTTCTCCTGATCACTACCGGA
ATCACGGCCGATGCCGACGGCCTTTTGTGGGGGCCGTCAGCATACCCGGACATATGGCAACGGCCTGGTCGAAGCCGTAG
GCACAGATAAGCCGCCGGTCTAACTCTGTCTACGCCGACGGTAGCCATAGGCATAGATAGGTCGCCGGAATACCTCCTTG
TATGCCGGCGGCGGCCGTCGGTATATATCGGCCATCGGCACATATGTGGGCCCGCCGACCAGGATACAGACGGCAGGCCG
ACGCCGTCAAATCTATATCGACGGCCCCGATGGCAGGCTATCGGCATAGATATTACATGTTTTCTGTCGGCTGTCAGCAC
CACGTGCCACTTATGCCGACGGCCTTGCCGTATGCATATATATTACATGTTTTCTGTCGGCTGTGGGCACCACGTGCCAC
TTATGCCGACGGCCTTGCCGTATGCATATATATTATCTGTTTTCTACATTTTTTTTCAATATATGTAAAGCTAAAATTTG
ATTAATTTGAATCTGACTTATGTAAACTTAACATAAACAAATTATATATCGATTTGGGTAGAATTTTCCATAGATTATGA
ACATGCAGCATGTTTTTTTTCCAGTATATTAGAATTTTTTGATTCGTCTGCAGTAATTGGAACGTTCATGGAAAGGGTCG
TAAACCGAACAGCATTATCACTGACCTGTTGAAGGTTTTTTGGCCGAGCCTATTCTGCCAGCGGCTAGACAGGGAATCGG
AGCTGCGGGTTTTGGCCACGACCTGGGACCACTACAAGGCTGCCAGCCTCGCGGAGTACGGGACGACCGCTAAGGCCGTG
ATCGCAAATTTTTGGGTAAGTTCTCTTCAGGATCATTTTTCTTGAGTTTTGTTCATATTTTATCATCGGATCACTCACCT
CATGCCTTGTTTGATTCTGGTGTTATGCATGGTTGTAGCAATTCTGTAGGGTTCTTGAGGAGCACAAGGCCAAAGCTGAC
ATGGTCCTGCTGGTGGCTGCAAGGAAGAAAGCTCGTCAGATGCAGTACGAGGTGCGCTGGGTTGCCATATCGCACTATTA
CCATAACTACCTTCATAAAAAGATGAGCAAGAAAGAAGGACAAAAGCAACGACTTACCTTGAACAAGGAGCAGTACATGA
AGGTAAGTATTACATACTTTTCATTCTGAGTATAAACAGTCAATTTCATTGTTTTGTGATGACATGTCATGCTTCCATTA
TTTACGTTATTCCTACTTGGTGCTACGGAAAGATGAGGGAGGGGCGAGTTTGGTGGATAGATGGCTCAGTCAGGATGCAG
AGCTTTTTGCCAAGAGCAGCAAGAACCGGGCTAACCATGGAAAACACGAAACACACGGCCAAGGAAACGGGAACCACTTG
GGCTACAAGGCCATGAAGGTATATCTATATGCATGATGCATTCTTTTTCTTCTTTTTACCATCATATTCTTATGTATGGC
TAACTTCTGTTTCACATTGCAGGAGGACAAGTTGAAGAAGCCGCTCTCAGACATGGAATCGTGGAAGCTGGCCCGTGCAC
GAAGTAAGTGCAAGGAAGGCAAGAGCGAGTACTACAGCAATGCCGAGGAGAACCTAGAGTCTTACAAGGAGTCGTTTGAG
AGGTTGCATCCTGGTCCGGATGCTCCTGACGCCGTCCAGTCTCAGCTCGATGAGACGACAGTGGTGGCCATCCAGCTGAA
GTACCATGGCCGCTACCTGTGCTTCGATGGCTTGATCACTCCTTCTATCTCCCACACACGGCTTCGAGCTACCAACCCGA
GCCCGAGCGGCAGTACGGGCCGTTCGCAGCCTAGCTTAGCCAGCCAACATGTTGTAAGTATTTCCTACCTTATCTTGTTT
CTTTCTCACTTTCTCACTTTATTTTCAGCATTGCCCACTTACAAACAACCTAATTTTTTAAGGCATATCAGGCCTTTGTC
GAGCTTAAGCATGTCGAGCTGCGGGAGTACTTGCAACGAGTAAAGGAAAAAGAGGATTACAACCGTCGGATGATGATGGT
TAGTTTAGCCCACTTAGAACCAAGCTAAAATTTGCATTTTGATTTCTTCTGACCTTCGTGTTTGCTTGGTTAATTAATAT
CCAGTCTATGTTCTCGTCTATGCAAAACCACATGGATCCACCATCAATGGGACCCCCCCCCACCACCTTCTAGAGAACCC
CCATACGTGCCCATGTTCGCTGAATGGGTGGCACTAGGTGGTGGGAGTCCGGTTAGTACATTGCTTAATTATTCACCAAC
TAGTTCTCATTGATTCAATACTATCATTTTACCCTTACAATCTCTTTTCAAATATGGGCCCCCATGGTTAGCATCATCGG
CTTTTCCAACTGGTGTTGGAGGCTCGACTCCTGCTTCAGAGAGCCCAGACACTCCGATCTGGCAAGGTGGTGCTGGTCTT
GGCGGTGCTCAGGGCAATGATCCTAGTCTTGGTCGATGATGTGATCCATGTCTTACAATACTTTCCATGGTCCGTACTTC
TTAGCGTTCTTTAGATGACGATGATTATGTCCGTGTCTCATACCTATATTCATGAAATTTCGACAATGATGATGTTGATC
TTTAGATGATGATGATGATATTGATCTTTAGATGATGATGATGTTGATGATCTTCAGATGATGATGATGATCTTTAGATG
ATGATGTTGATGATCTTTCATATTTATGTCTAAATATGGTTTGATGTGAATTCAAATGCTATCAATTTGAATGGAAAATG
CAAAACAAAGCCTACTAAAAAATAAAACAGAACTATGCCACGCCTTGGAGAAGCCAGAGGCCGCCACATGGCAGGGGTAT
GCCGACGGCCTGGCCGTCGGCATATCCCGCTGTTAGAAACAAAGAGAGACCGCCACGTGGCCAGGGTATGCCGACGGCCA
GGCCGTCGGCATACCCCTTTGCCAGAAGCAACCAGAGGAGGCCACGTGACAAGGATAAGCCTACGACCCCACGTGGCAAG
GATAAACCGACAGCCAGGGCCATCGGCTTATCCTTGCCACGTTGCCTCCTCTAGTCACGCTCGGTGATGGTGCCGTCAGT
TGCCGTTTGGTGGTTTTCTGTGTCGGCAGTGTTTCTATGTCGACGGCCGTACAAATATCGTCGGCATACATCTCTATGCC
GACATCCTATCTATGCCGACGGTATGACAAGACTATGACGTCCGTGTCGACGCCGACGGGCCTATGCCGATGGCCGCCGT
CGGCATAGGTGTATACCGGTATACGGCCTATACCCGGTAGGGACATGGTTGTTGTGTCTCCTGGGGATCTTTCAGCAGCC
AAAAGCTATGATTCTTGAGTTT----------------------------------------------------------
--------------CATGACTGATTTGACAAGTTAAA-------------------------------------------
--------------------------------------------------------------------------------
----------------------------------------------------TACTAGCAAAAGATACTGGCAGGAAATA
CATTGAAGGAAATTGTACTTGAAGTCTAAAACAAGTTGTACTTGCAGGAAATGCTCAGATAGTTTCAAGTTCTCTC----
----ACA----------AACCCACACAAGGGCTCAACAATTGTGATGGAGTCTCAATA-GCCCACACACATAC-------
--------------------------AGTACACTACTACAAAGTTCAGCACACACCGCCG----TCCCATGCATATA---
-------------TAGTCACGCACGGCTGCCATCAGTTGTCGACATGAGCCTCTCCGTCGGTGACCGAGATGCCGT----
--------CGCC------TTCTTTGTTCACC---------------------GCCTCTGGCAGTGCCTCCGATGCCCGCT
TCTCCTCGGCGAGACAG---GCTCTGCGCCAGTGGTCCCTGGTGTAGATGTGATTGATCATGCCGCGCTTGTCACAGCCG
TGCACGGCGCACAGACCACACGAGAGGCTGCCGTCCGCCTGGCGCA
>chr1B_1029
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---------------CAAGAGCTCAAAGATGAACAAGGGGAAGATTTTTAAGCTAGCTAAGAGATTCAGAGGAAGGGCTA
-AAACTACAAAAGAATCGCCAGGGAGCATGTTGAAAAAGCATTGCAATATTCGTACAGGGATCGGTGCAACAAGAAAA-G
GGACATGCAATCTCTCTGGATTGAGCGCATCAATGCTGGTACACGACTCCATGGGGTATGTTTTTTTTAAATGGTCACCG
TGGGGAAAGACTCCCCACCTGAATATACTTCAATGTGGCCTTAATGCCATAAGAATGATCCAGTTTATGAGGAAATCCGG
GTCGAAAAGCATACAAGAAGATCAAGGACAACCCATGAAAGGCACAAATAGATGAGGGGAGTCGTCGAAGGATCACAATA
CCAAGACTTGGCAAGCAGCCTAATGCACCGCATCGGCGTGCCTATCAAACACCACGGCGGAACAGAGGAGTATCCACAAT
CAACGGGTGACAAGCACGAACCTTGACTCGGAGCTCCGCCATGAAAATTCGGGAACGATTAGCAGGTTGGGAAGGCATCT
TGCAGCATCAATGAGCAAAGATGAACCAAGACAACGCCAAGAGCACGAAGCTCGTAGCACCACAACGGCAGCCATGGGAG
GTCCCACCACCAACCCCCATCACCAAACAGATCAGCAAAACCAGCAAGGAGGAGGACTTCAACTTCCATCTTCATCTGAC
CAAGCAAGGAGAGTCTTGAACATTGGTCGTCTGGTCGCCACCCAACAACACCCCGGAGAGGTAGGTGTCATACAGGAACG
AGGTGATCCAAAGAGGATAACGCCCCTGCTAACCCGGCTTCGGATGAAAAAAGCAGAACACTCCAGGGCATGATCGAGCC
AAAATCACGTTGACAGAGCACCACCATCCCACACCACCACCTCACACCCCCCGTCGACCCCAATCCGGCCGTACCACCAC
CACCAACATCCCCATAGCGAGCAGCTATCCAACAAAACAACCAGCCGACTTCAGACGATGCCTTCAAGAAGGGATGCAAC
GCATATAGCGGCGCCATCATACGTTCCAGGCGGACCTGGAACCTGGGTTTCCCTGAAGTCGCGACTAGGATGGCAAGCTC
AACATTACAACAACGGCTTCAAGAAGGTTTTGTGGTGCCCATATATAAGCGTCACCGTCGCTGGCTCCGGTGAGAGCACG
ACTTTCGCCGTGTTGAGCACACACATCCAAAGCGCCGATTGATCAAGGTAGACTGCTCACCTGCAGCACCAGAAGCATTA
GGCCTAGCAGCCCTGACGCCACTCAGACTCGTCGGCAGCAACCACCCCTGCCGCAGGCGCGCCGCCGAGCGGAACGACCG
CACCACATGAGTTTGGATCTGAGGGAGGGAGCTGCCGGAGACGCAGAGGAAGACCTCCACGCCGCGCCCACGCATCTGGC
ACAACGACGATGGCGACAGAGCAAGCGGCCGGAGCCGAGCGCGTCCAGCTCCTCCAAGTTGACCGTAGGGCAGAGCTCGC
CATGCCCGAGCGCTGTCCTCAGCCGCGGGCAAGTTCCTCGCCGCCGCCGTCGGCCACACAGCTTTGCCATGCGGCGTCTT
CCGGCGGCAGCGGAGAGGAATGTGGATTTTGCGGCGGCTAGGGTTTGGGCGTCTGCCCGAGCCGCTCGCACGGGAGCGAC
CACAACCCGAAATTTACTCACATAAGTTTCCCATCCTCCATGGGGTATGTAGTATCTATTTAC-TACGAGGTTTGACAAT
GAAATGA-GTTTGTTGCATTCTGATGTTA---A-TTATTTTCCTGAAGAAACCAAGGAGAACATGA--------------
--------------------------------------------------------------------------------
---------------------------------------------------------------------TAATAAAGTAC
TCCCTACGTCCTATGATATAAAATGTTTTTGCAAGCTAAGACGGAGGGAG-------TATAAGTTATTGGGTTTCTAGTT
TTGCTGCTACTATGCGCACATG--C--ACATGTGTTTGATATATTGTCTGAACTGACTGCTCAGGTGAACTATTGGCAAC
TTCATGCATAGACTGATGAAGGAGAAT-----------------------------------------------------
------------------TGTATCTCGCACTTCATTCCCTGGGAGCAGGCCGCCTGCCAAAAAGATAGGACTAACAAGT-
TTGTATAAACAATTCCTCCCTCGACAATTCAG--------TCCAAACCTACCAAAACCTTGTGAGGAA------------
--------------------------------------------------------------------------------
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--------------CTCATGTGATGGTGCTGGCCGG--------------------------------------------
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--------------------------------------------------------------------------CACCAG
GCATCGTTTGCTAGCATGTATGGTTTGATAAAAAGGACTTG------TA-------------------------------
--------------------------------------------------------------------------------
----------------------------------------------------------CAAAAGATACTGGCAGAAAATA
GCTGGAAGAAAATTGTAC--GAAGTCTAAAATAAGTTGTACTGAAAGA--------------TTTCAAGTTGTCTC----
----ACA----------CACCCACACAAGGGCTCAACAATTGTACTGAAGTCTCAACA-GCCCATACACACATA------
-------------------------------------------TTCAGCACACACCGCCGAGCGTCCCATGCACGGGACC
TGGCCGCGCCTTTTAGTCACGCACGGCTGCCCTCAGTTGTCGACCTGAGCCGCTCCCT----------------GT----
--------CGCC------GTCTTTGTTCACTGCCTCTAGCGCTGCCTCCGATGCCCGCTT------------------CT
TCTCCTCGGCGAGACGG---GCTCTCCGCCAGTGGTCCCTGGTGTAGAGGTGACTGATCATGCCGCGCTTGTCGCAGCCG
TGCACGCCACACAGGCCGCACGAGAGGCTGTCGTCGGCCTGGCGCA
>chr1D_1395
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------------------------------------------ATTGTCTGAACTGACTGCCCAGGTGAACTA-CGGCAAC
TTCATGCATGGACTGATGAAGGAGAATGTCCAACTCAACAGTAAAGTACTTTCAGAGCTGTCGATGAAGGAGAAT-----
------------------TGTATCTCGCACTGCATTCCCTGGGAACAGGCCGCCTGCCAAGAAGG----------AAGTA
TTCTATAAACAATTCCTCCCTCGACAATTCAGCCTACTAGTCCAAACCTACCAAAACCTTGTGACGAA------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
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--------------CTCTTGTGATAGGGCTATGTATCAACAT-----------CACGTTATTCAGTCTGTTAGCCTGTTG
AA-CAGAGGT-----GTACTGCACTTCCT--------------------------------------ATAAATCCAGTAG
AGCGGAAA---TT---TAAACCATGT-AAAAA--AAGATGTGGTTATTTTGGGCAGACAGTTTTTCTTCCTATTTTGAAC
AGAGGTGTACTGAACTTCTGAAGTCAT-----GTAGTCCTTATGAAGGTATGCTGAATAG--------------------
-----------TCCTTGAATACCCACTGCGTGTTGATTTCTATGTAT---------------------------------
--------------------------------------------------------------------------------
----------------GCCCTTCTCGCTGGCAGTATTTCATGCATGGCTCTGCAGTTCTGTTTATTTATGTAGTAC----
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------ATCCTTTTGCATGCCTGCCTCTGTAACCCTGCTGCTTTGAGCTAATTCCCCCTTCTCCTGAGAATCGCCG-A
TCTCCT--------------------------------------------------------------------------
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--------------------------------------------------------------TGGGATCTTTCAGCAACC
AGAAGCTATGGTTCTTGAGTTCAAACTGCCGTTATCATGTTTTGCAGATAAATGGTAAGGCTGGGAGCGACCTTCACCAG
GCATCATTTGCTAGCATGGCTGATTTGATAACAAGTTAGAAAAGGACTA-------------------------------
--------------------------------------------------------------------------------
----------------------------------------------------------CAAATGATACTGGCAGAAAATA
GCTGGAAGCAAATTGTAC-TTAAGTCTAAAATAAGTTGTACTGAAAGA--------------TTTCAAGTTGTCTCACAC
ACGGACA----------CACCCACACAAGGGCTCAACAATTGTACTGAAGTCTCAACA-GCCCATACACACATACAGTAC
ATTACT----------------------------ACAACAAAGTTCAGCACACACCGCCG----TCCCATGCAA------
--------------AGTCACGGACGGCTGCCCTCAGTTGTCGACCTGAGCCGCTCCGTCAGTGACCGGGACGCCGT----
--------CGCC------GTCTTTGTTCACTGCCTCTAGCGCTGCCTCCGACGCCCGCTT------------------CT
TCTCCTCGGCGAGACGGCCGGCTCTACGCCAGTGGTCCCTGGTGTAGAAGTGACTGATCATGCCGCGCTTGTCGCAGCCG
TGCACGCCACACAGACCGCACGAGAGGCTGTGGTCTGCCTGGCGCA
>SNPs
SSSSS-------SS-------S-----------------S----------------------------------------
-S--------------------------------------------------------S---------------------
--------------S--SS---------S--------S-------S----------------------------------
--------------------------------------------------------------------------------
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--------------------------------------------------------S-----------------------
--------------------------------------------------------------------------------
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-S------------------------S-----------------------------------------------------
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----S-----------------------S------------S--------------------------------------
----------S---------------------------------------------------------------------
--------------------------------------------------------------------------------
----------------------------------S---------------------------------------------
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------------------------------------S-------------------------------------------
------------------S------------------------------------------------------------S
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----------------------------------------------------S---------------------------
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-----------------------------------------------------------------------------S--
-------S---------------------SSS-------S----------------------------------------
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---------------------------------------------------------------S--S-------------
-----------------------------------S--------------------------------------------
--------------------------S-----------------------------------------------------
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---------------------------------S----------------------------------------S-----
------------------------------SS-----------S--------------------S---------------
-S----------------------------------------S----SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSS---------------------S-----------------------------------------------
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--------------S--------S--------------------------------------------------------
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----------------------------S---------------------------------------------------
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--------------S---------------------------------------------S-------------------
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------------------------------S----S-S------------------------------------------
---------------------------------------------------------S------------------SSSS
SSSSSSSS------------S----S------------------------------------------------------
--------------------------------------------------------------------------------
----------------------------------------------
>forward_22
---CGGATAGTGTCGGATTGGC----------------------------------------------------------
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>reverse_4448
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-----------------------------------------------TCCGTTCGGAATTACTCGTCC------------
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----------------------------------------------
