>input_sequence_69324
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----------------------------------------ATGGACGATTTACTCTCGCCGTACTCCTCTTTCCTTCCAC
CCTCGCCGTGCTCCAAACTCTCCACCGTCCACGAACAGCAACTTGAGTTCGTATCCCAGGATCTTCCCGAACCATGGCTG
TTCGACGGCAGCATGATGTCCAACAAAGCGGACAGTGAGCTGTG---GCCTATGGGGAGCCCGCTCGCCGGGAGCACTGT
GCACTCCGAGCTACCGCCGAGCCTCCCGGCAACGCCGCAGGATCCTGTGAAGAGGCGGGGACGGAAACCCGGATCCTGCT
CC------------A---CGGTCAGCCACGTGCAGGCCGAGCGGCAGCGCCGCAACAAACTGAACCGTCGATTTTGTGAC
CTCCGCGCTGCCGTCCCCACCGTGTCCCGCATGGACAAGGCATCACTCCTCTCCGACGCCACCATCTACATCACGGAGCT
GCGCTCCCGCTTGGAGCGCCTCGAG---GAGGCCAAAAAGGCACTGGAGCAGAGCTCCGCGGCC----------------
-----------------------------GCTTCTCGCGATGGACTAGCTGCCG------AATTCCTACAGGTGGATGAA
ACGGTAGACATGCAGATGGTGGGGCGTGATGCAGCCGTGGTGCGTGTGACCACCGCGGCGAGC---------CACGCGCC
CGCGCGGCTGATGGGCGCGCTCCGGTCGCTGGACCTGCAGGTGCAGCATGCCTGCGTTAGCCGCGTGCACGGCGTGACCC
GGCAGAGCGTTCTCGTTGACGTGCCAACCTCGATGCAG------GATGAGGACAGTCTCCGCTCGGCTGTGCTCCAGACG
CTGCAGGATAGCGCCTAG--------------------------------------------------------------
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-----------------------------------------------------------------
>chr7D_1_TraesCS7D01G102200
GCATGAAAACGGATCAGGTGTAGTCCATATTGAAATCTCGGAAAAAAACTTATATTTAGAAACAGAGGAAGTATAGGCTT
AACCTAAGTTTAAATCCTAGCTTGAATGCTTGATTCAACCAACCAGTCACAAATCTGCGTCAAATAAATTGTGCTCATGT
ACGTGTGTTTTGTGGGACGGGTCGAAGAGATTATCACATTATACCAGCGTCTTCCGGCAGGATCGACCCAACAGCCTGCC
AGCTTCTATATGTGAGAGTAGTATATATGCTTCCTACATAGGTAGAAAATGCCCTTTGGTGCTCGTGCTCCATGGAGCTT
GTTCTTTTGAAAAATTCAATTTTTTTTTAATTGCTACCAAAATTCTGAAAAACACCCACAGTATGCATACGGTTGTATAC
TGCATTTGTGTTCATTTTTTAAGATGAAATAAATTGACACACAAGCTACACAGAAACGACAAAACGGTAATTTTGAAAAC
TATATAAAACCAATGATTTTCACTTTTTGTGTAGCTCGCGAATCAATTTATTTTCTCATCAAATTTTACACACATGTAGT
ATACATCCATATGCCATTGTGGAAAAAAATTTCAGAATTTTTAAAACTTTGAAATGTTTTGTTTAAGGGTTTTATTGAGC
CCGAGCTCCAAAACGTTGGACTACAGACTACCACTACATATACTTTGTTATGTCATCTAGTCCTCGCCTGGTGGTACATA
AATACTTCCGGTAGGAAAATGAACTCAACATGGTTTTCACATGACTGTTTTTCCCTATCCTATGATGTTACGGGCTTATT
CTCTGATTCAGGAAGGTGTTCATTAAACCTGTCATGTCGATTTAACAACTAGTGTTTCCAAGTTTGCGACCTCAAGCTTA
CAACCAGTACATATAGAGGCATAGAGCATACCCAAGCCTTATCAGATGTCATCGTAGTTACATTGAGCATTTCTGCTTGC
CACGTCAAGGTGAGAGAGAAACAACACCGAGCTGCTGTCCATGGACGATTTACTCTCGCCGTACTCCTCTTTCCTTCCAC
CCTCGCCGTGCTCCAAACTCTCCACCGTCCACGAACAGCAACTTGAGTTCGTATCCCAGGATCTTCCCGAACCATGGCTG
TTCGACGGCAGCATGATGTCCAACAAAGCGGACAGTGAGCTGTG---GCCTATGGGGAGCCCGCTCGCCGGGAGCACTGT
GCACTCCGAGCTACCGCCGAGCCTCCCGGCAACGCCGCAGGATCCTGTGAAGAGGCGGGGACGGAAACCCGGATCCTGCT
CC------------A---CGGTCAGCCACGTGCAGGCCGAGCGGCAGCGCCGCAACAAACTGAACCGTCGATTTTGTGAC
CTCCGCGCTGCCGTCCCCACCGTGTCCCGCATGGACAAGGCATCACTCCTCTCCGACGCCACCATCTACATCACGGAGCT
GCGCTCCCGCTTGGAGCGCCTCGAG---GAGGCCAAAAAGGCACTGGAGCAGAGCTCCGCGGCC----------------
-----------------------------GCTTCTCGCGATGGACTAGCTGCCG------AATTCCTACAGGTGGATGAA
ACGGTAGACATGCAGATGGTGGGGCGTGATGCAGCCGTGGTGCGTGTGACCACCGCGGCGAGC---------CACGCGCC
CGCGCGGCTGATGGGCGCGCTCCGGTCGCTGGACCTGCAGGTGCAGCATGCCTGCGTTAGCCGCGTGCACGGCGTGACCC
GGCAGAGCGTTCTCGTTGACGTGCCAACCTCGATGCAG------GATGAGGACAGTCTCCGCTCGGCTGTGCTCCAGACG
CTGCAGGATAGCGCCTAGCCCGCTCGGCTGTAAAAACATTCATCTTATCATCTCCCATGTATGTTTGTGTACGGACACCA
TCCTTGAGGTTAACGCAGGTGGAACAGTGGTTGCTAGATCAATGTAAGGGATATCGGATGATCTACGGGATAACAATAAA
GTGATGAAATAAATGTTTACAATATTATTATTCTTCTTCTTATTAGTAGTAGTATTATCTTCAGCAGGGACCTAAACAAA
GTTTTTGTACCACATAACATTTA-TCATTGCGGAGTGTAACAGAGAATACAATTTAGA-TTTTTTTGGCTATCTCTGAAA
CAGGGAGACGTGATTTTTCAGTAAGTCTGCTTAACCGTCTTTCTGGCGGGATAGACTTCACATGGGTTTCACGACCGCCT
AGAGGTCGTTCTGGGG-CATCTTACTT-GCGTAAACACGGGGACTATGGATGTGTTGGCTAGTTCGGATGATGAGTTTCA
CCTTAAACTCCATATTCGGAGCAAGGCCGACAACTTCACATGGACCCTCGTCGCTGTGTATAGGGCAGCCCAGGATTAGT
TCAAGACTGATTTTCTCCGTGAATAGGTTAATCTGGCAAAAGATAATCCCTACCCCATTCTTATAGGAGGGGATTTTAAT
TTGCTTTGATTCCCAAGTGAGAAAAGCCGC---AGGTTTGATAATCATTGGCCTTTCCTTTTCAAAGCTGTCATCGACAG
TCTAGATTTGCGAGAGGTTTTCATGGTTGGAAGACAATTCACTTGGGCGAACAGTCTTCCTGACCCAACATATGAGAAAC
TAGATCGCGTTTTAATGGATACCGATTGGGAATCTAAATTTCCTAAGGTGTCTGTTTGTGCGCTACCTCGTATCGAGGCC
ATATCAGACCACACACCCATCTTCCTAACTACTGGTTTGCCACGACCACATCATAGATGCAAGTTCAAGTTTGAACTTGG
TTGGTTGCTTCAGGATGGCTTCCATGACATGGTCAAGGGGGTATGGCAGAAACCAGTGGCCGGGC
>chrUn_941
CATATGATCATATC------------------------------------------------------------------
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-----------------------------------------------------------------------TCTGCTTGT
CACTTCCAAGCGATAGAGTAGCGATATCGTGCTGCCGTCCATGGACGATCTCCTCTCTCCGTCCTCCTCCTTCGTTCCAC
CCTCACCGTCCTCCCACTTCTCCACCGTAGGCCAGCAGGTGCTCGAGTTCGTGTCCCGGGAAATTCCCGAACAATGGCTG
TTCGACGACGGCACGATGTCCCAGAACGCGGACAGGGAGCTGT---CTCCCACGGGGAGAACGCTCCTCCGGAGCGCTGA
GCTCTCCGAGCTGCCACCGAGCCTCCCGGCAACGCTGCAGTGCCAAACCAACCGGCGGGGCCGGAAAACCGGGCCCCGCT
CTGACGGTCGCCATAGCGCCGTCAGCCATGTGCAGGCCGAGCGGCTGCGCCGCGACAAACTGAACCGTCGATTTTGCGAT
CTCCGAGCTGCCGTCCCCAACGTGTCCCGCATGGACAAGGCATCACTCCTGGCAGACGCCGTCGCCTACATCGCGGAGCT
GCGCTCCCGCGTGGCGCGCCTCGGGGACGAGGCCAACAAGGAACTGGAGCAGAGCTCTGTGGCC----------------
-----------------------------GCTT------------------CCA------AGTTCGTGCAGGTAGATGAA
GCGGTGGACGTGCGGATGGTGGGAAGTGACGCGGCCGCGGTGCGTGTGACCACAGCAGCCAGC---------CACGCTCC
GGCGCGGCTGATGGGCGCGCTCCGGTCGCTGGAGCTGCAGGTGCAGCATGCCTGCGTTAGCCGCGTGCAAGGCGTGACCC
TGCAGGACGTCGTCGTGGACGTGCCACCCTCGATGCAG------GACGCTGATGGCCTCCGCTCGGCGCTGCTCCAGACG
CTGCAGGACAGCGCCTAGGCCGCT--------------------------------------------------------
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-----------------------------------------------------------------
>chr2B_941
CATATGATCATATC------------------------------------------------------------------
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-----------------------------------------------------------------------TCTGCTTGT
CACTTCCAAGCGATAGAGTAGCGATATCGTGCTGCCGTCCATGGACGATCTCCTCTCTCCGTCCTCCTCCTTCGTTCCAC
CCTCACCGTCCTCCCACTTCTCCACCGTAGGCCAGCAGGTGCTCGAGTTCGTGTCCCGGGAAATTCCCGAACAATGGCTG
TTCGACGACGGCACGATGTCCCAGAACGCGGACAGGGAGCTGT---CTCCCACGGGGAGAACGCTCCTCCGGAGCGCTGA
GCTCTCCGAGCTGCCACCGAGCCTCCCGGCAACGCTGCAGTGCCAAACCAACCGGCGGGGCCGGAAAACCGGGCCCCGCT
CTGACGGTCGCCATAGCGCCGTCAGCCATGTGCAGGCCGAGCGGCTGCGCCGCGACAAACTGAACCGTCGATTTTGCGAT
CTCCGAGCTGCCGTCCCCAACGTGTCCCGCATGGACAAGGCATCACTCCTGGCAGACGCCGTCGCCTACATCGCGGAGCT
GCGCTCCCGCGTGGCGCGCCTCGGGGACGAGGCCAACAAGGAACTGGAGCAGAGCTCTGTGGCC----------------
-----------------------------GCTT------------------CCA------AGTTCGTGCAGGTAGATGAA
GCGGTGGACGTGCGGATGGTGGGAAGTGACGCGGCCGCGGTGCGTGTGACCACAGCAGCCAGC---------CACGCTCC
GGCGCGGCTGATGGGCGCGCTCCGGTCGCTGGAGCTGCAGGTGCAGCATGCCTGCGTTAGCCGCGTGCAAGGCGTGACCC
TGCAGGACGTCGTCGTGGACGTGCCACCCTCGATGCAG------GACGCTGATGGCCTCCGCTCGGCGCTGCTCCAGACG
CTGCAGGACAGCGCCTAGGCCGCT--------------------------------------------------------
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-----------------------------------------------------------------
>chr2B_941
CATATGATCATATC------------------------------------------------------------------
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-----------------------------------------------------------------------TCTGCTTGT
CACTTCCAAGCGATAGAGTAGCGATATCGTGCTACCGTCCATGGACGATCTCCTCTCTCCGTCCTCCTCCTTCGTTCCAC
CCTCACCGTCCTCCCACTTCTCCACCGTAGGCCAGCAGGTGCTCGAGTTCGTGTCCCGGGAAATTCCCGAACAATGGCTG
TTCGACGACGGCACGATGTCCCAGAACGCGGACAGGGAGCTGT---CTCCCACGGGAAGAACGCTCCTCCGGAGCGCTGA
GCTCTCCGAGCTGCCACCGAGCCTCCCGGCAACGCTGCAGTGCCAAACCAACCGGCGGGGCCGGAAAACCGGGCCCCGCT
CTGACGGTCGCCATAGCGCCGTCAGCCATGTGCAGGCCGAGCGGCTGCGCCGCGACAAACTGAACCGTCGATTTTGCGAT
CTCCGAGCTGCCGTCCCCAACGTGTCCCGCATGGACAAGGCATCACTCCTGGCAGACGCCGTCGCCTACATCGCGGAGCT
GCGCTCCCGCGTGGCGCGCCTCGGGGACGAGGCCAACAAGGAACTAGAGCAGAGCTCTGTGGCC----------------
-----------------------------GCTT------------------CCA------AGTTCGTGCAGGTAGATGAA
GCGGTGGACGTGCGGATGGTGGGAAGTGACGCGGCCGCGGTGCGTGTGACCACAGCAGCCAGC---------CACGCTCC
GGCGCGGCTGATGGGCGCGCTCCGGTCGCTGGAGCTGCAGGTGCAGCATGCCTGCGTTAGCGGCGTGCAAGGCGTGACCC
TGCAGGACGTCGTCGTGGACGTGCCACCCTCGATGCAG------GACGCTGATGGCCTCCGCTCGGCGCTGCTCCAGACG
CTGCAGGACAGCGCCTAGGCCGCT--------------------------------------------------------
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>chr1B_954
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-------------------------------------------------------------------------TGCTTGT
CACTCCTAGGCGACAGAGCAGCGATATCGAGGTGCCGTCCATGGACAATCTACTCTCTCCGTCCTCCTGCTTCCTTCCAC
CCTCGGCGTCCTCCCAATTCTCCACGGTGGGCCAACACGTGGTCGAGTTCGTGCCCCTG---CTTCACGAGCAATGGCCG
TTCGACGACGGCACGATGTCCCAGAACGAGGACAGGGAGCTGTGGGCGCCTATGGGGAGCACTCTTCCCCGGAGCCCTGA
GCTCTCGGAGCTGCCGTCGAGCGTCACGGCAACGCCGCTGTCCAATGGTAAGCGGCGTGGCCGGAAACCCGGGCCCCGCT
CCGAGTCTCGCCAAA---CCGTCAACCACGTGCAGGCCGAGCGGCAG-GCCGCGACAAATTGGACCGTCGATTTTGCGAC
CTCCGCGCTGTCGTCCCCAACGTGTCCCGTATGGACAAGGCATCACTCCTTGCTGACGCTGCCACCTACATCGGAGAGCT
ACGCACCCGCGTAGCGCACCTCGAGGACGAGGCCAACAAGACATTGGAGAAGGGAGCTGCGGCCGCCGCTTCTC------
------------------GCGGTGGTACAGCTT------------------CCA------AGTTCCTGCAGGTAGATGAA
ACGGTGGACGTGCGGATGGTGGGACGAGACGGGGCCGCCGTGCGTGTGACCACCACTGCCACC---------CACGCTCC
CGCGCAGCTGATGGGCGCCCTCCGGTCACTGGAGCTGCAGGTGCAGCATGCCTGCGTTAGCCACGTGCAGGGCGTGACCC
TGCAAGACGTCCTCGTGGACGTGCCAACCTCGATGCAG------GACGCCGACGACCTCCGCTCGGCGCTGCTCCAGGCG
CTGCAGGACAGC--------------------------------------------------------------------
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>chr2A_988
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---------------------------CGAGCTGCCGTCCATGGACGATCTCCTCTCTCCGTGCTCCTCCTTCCTTCCAC
CCTCACCGTCCTCCCACTTCTCCACCGTAGGCCAGCAGGTGCTCGAGTTCGTGTCCCGGGAAGTTCCCGAACAATGGCTG
TTCGACGACGGCACGATGTGCCAGAACGCGGACAGGGAGCTGT---CTCCCACAGGGAGAACGCTCCTCCGGAGCGCTGA
GCTCTCCGAGCTGCCACCGAGCCTCCCGGCAACGCTGCAGTGCCAAACCAAGCGGCGGGGCCGGAAACCCGGGCCCCGCT
CTGACGGTCGCCATAGCGCGGTCAGCCACGTGCAGGCCGAGCGGCTGCGCCGCGACAAACTGAACCGTCGGTTTTGCGAC
CTCCGAGCTGCCGTCCCCAACGTGTCCCGTATGAACAAGGCATCACTCCTGGCAGACGCCGTCGCCTACATCGCGGAGCT
GCGCTCCCGCGTGGCGCGCCTCGAGGACGAGGCCAACAAGGAACTGGAGCAGAGCTCTGTGGCC----------------
-----------------------------GCTT------------------CCA------AGTTCCTGCAGGTAGATGAA
GCGGTGGACGTGCGGATGGTGGGAAGTGACGCGGCCGCGGTGCGTGTGACCACAGCGGCCAGC---------CACGCTCC
GGCGCGGCTGATGGGCGCGCTCCGGTCGCTGGAGCTGCAGGTGCAGCATGCCTGCGTTAGCCGCGTGCAAGGCGTGACCC
TGCAGGACGTCGTCGTGGACGTGCCACCCTCGATGCAG------GACGCCGACGGCCTCCGCTCGGCGCTGCTCCAGACG
CTGCAGGACAGCGCCTAGGCCGC---------------------------------------------------------
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>chr1D_990
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-----------------------------AGGTGCCGT-CATGGACAATCTACTCTCTCCGTCCTCCTGCTTCCTTCCAC
CTTCGCCGTCCTCCCAATACTCCACGGTGGGCACACAGGTGATCGAGTTTGTGCCCCTG---CTTCACGAGCAATGGCTG
TTCGACGACGGCACGATGTCCCAGAACGAGGACAGGGAGCTGTGGGCGCCTATGGGGAGCACGCTTCCCCGGAGCCCTGA
GCTCTCGGAGCTGCCGTCGGGCGTCCCGGCAACGCCGCTGTCCAATGGTAAGCGGCGTGGCCGGAAACCCGGGCCCCGCT
CCGACTCTCGCCAAA---CCGTCGGCCACGTGCAGGCTGAGCGCCAGCGCCGCGACAAACTGAACCGTCGATTTTGCGAC
CTCCGCGCTGTCGTCCCCAACGTGTCCCGTATGGACAAGGCATCACTCCTTGCTGACGCCGCCACCTACATCGGGGAGCT
ACGCACCCGCGTAGCGCACTTGGAGGACGAGGCCAACAAGACATTGGAGAAGGGAGCTGCGGCCGCCGCTTCTC------
------------------GCGGTGGTCCAGCTT------------------CCA------AGTTCCTGCAGGTAGATGAA
ACTGTGGACGTGCGGATGGTGGGACGAGACGGGGCCGCGGTGCGTGTGACCACCACTGCCAAC---------CACGCTCC
CGCGCAGCTGATGGGCGCCCTCCGGTCACTGGAGCTGCAGGTGCAGCATGCCTGCGTTAGCCACGTGCAGGGCGTGACCC
TGCAAGACGTCCTCGTGGACATGCCAGCCTCGATGCAG------GACGCCGACGACCTCCGCTCGGCGCTGCTCCAGGCG
CTGCAGGA------------------------------------------------------------------------
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>chr5B_1278
CC------------------------------------------------------------------------------
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--------------A---CTGTCAGCCACGTGGAGGCCGAGCGGCAGCGCCGCGACAAACTGAACCGCCGCTTCTGCGAC
CTCCGCGCTGCCGTCCCCACCGTGTCCCGCATGGACAAGGCCTCCCTCCTCGCCGACGCCGCCGCATACATCGCCGAGCT
GCGCGCCCGCGTTGCCCGGCTCGAGGACGAGAGCAAGCAGG------------------CGGCCGCCGCGAGGTGGGACA
CTAACTCGGCCTCCCTCGGCGGTGGCGGCGCCT------------------CCTTCCAGCACTTTCTAGCAGGAGACGAG
ACGGTGGAAGTGCGGATGGTGGGGCGGGACGCGGCGGCGGTGCGCGTGACCACGGCCGCGGGGTCCGCCCCGCACGCGCC
GGCGCGGCTGATGAGCGCGCTCCGGTCGCTGGAGCTGCAGGTGCAGCACGCGTGCGTGAGCCGCGTGCAGGGCGCGACGG
TGCAGGACGTCGTGGTGGACGTGCCGGCCGCGCTGCAGCACGATGACGGCGCCGCCATCCGCTCCGCGCTGCTTCAGCGG
CTACGCGACAGCGCCTAGC-------------------------------------------------------------
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>chr5D_1278
CC------------------------------------------------------------------------------
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--------------A---CTGTCAGCCACGTGGAGGCCGAGCGGCAGCGCCGCGACAAACTGAACCGCCGCTTCTGCGAC
CTCCGCGCTGCCGTCCCCACCGTGTCCCGCATGGACAAGGCCTCCCTCCTCGCCGACGCCGCCGCATACATTGCCGAGCT
GCGCGCCCGTGTGGCCCGGCTCGAGGACGAGAGCAAGCAGG------------------CGGCCGCCGCGAGGTGGGACA
CTAACTCGGCGTCCCGCAGCGGTGGCGGCGCCT------------------CCTTGCAGCACTTTCTAGCCGGCGACGAG
ACGGTGGAGGTGCGGATGGTGGGGCGAGACGCCGCCGCAGTGCGCGTGACCACGGCCGCGGGGTCCGCTCCGTACGCGCC
GGCGAGGCTGATGAGCGCGCTCCGCTCGCTTGAGCTGCAGGTGCAGCACGCGTGCGTGAGCCGCGTGCAGGGCGCGACGG
TGCAGGACGTCGTGGTGGACGTGCCCACCGCGCTGCAGCATGATGACGGCGCCGCCCTCCGCTCCGCGCTGCTCCAGCGG
CTACGCGACAGCGCCTAGC-------------------------------------------------------------
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>chr7D_2008
TAAGCA--------------------------------------------------------------------------
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-------------------TTTATTCATTGCGGAGTGTAATAGGGAATACAATTTAGA-TTTTTT-GGCTATCTCTAAAA
CGGGGAGACGTGACTTCTCAGTAAGTCTTCTTAACCGTCTTTCTGGCGGGATAGAATACACTTGGGTTTCACGACCGCCT
AGAGGTCGTTCTGGGGGCATCTTACTTGGCGTAAACACGGGGACTATGGATGTTTTGTCTAGTTCGGATGGTGAGTTTCA
CGTTAAACTCCATATTCGCAACAAGGCCGACAACTTCACATGGACCCTCGTCGCCGTGTATGGGGCAGCCCAGGATGAAC
TCAAGGCTGATTTTCTCCGTGAATTGGTTAATCTGGCAAAAGATAATCCCTACTCCATTCTTATAGGAGGGGATTTCAAT
TTGCTTCGTTTTCCAAATGAGAAAAGCCGTGGTAGGTTTGATAATCATTGGCCTTTCCTTTTCAACGCTGTCATCGACAG
TCTCGATCTGCGAGAGGTTTCCATGATTGGAAGACAATTCACTTGGACGAATAGTCTTCCGGAACCGACAGACGAGAAAC
TAGATCGCGTTTTAATGGATACCGACTGGGAATCTAAATTTCCTATGGTGTCTGTTCGTGCTCTACCTCGTACCGAGGCC
ATATCAGACCACGCACCAATTCTCCTAACTACTGGTTTGCCACGACCACAACATAGATGCAAGTTCAAGTTCGAACTTGG
TTGGTTGCTCCGGGATGGCTTCCATGACATGGTCAAGAAGGTATGCGAGAAACCGGTGGCCGGG-
>chr4B_2008
TAAGCA--------------------------------------------------------------------------
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-------------------TTTATTCATTGCGGAGTGTAATAGGGAATACAATTTAGA-TTTTTT-GGCTATCTCTGAAA
CGGGGAGACGTGACTTCTCAGTAAGTCTGCTTAACCGTCTTTCTGGCGGGATAGAATACACTTGGGTTTCACGACCGCCT
AGAGGTCGTTCTGGGGGCATCTTACTTGGCGTAAACACGGGGACTATGGATGTTTTGGCTAGTTCGGATGGTGAGTTTCA
CGTTAAACTCCATATTCGTAACAAGGCCGGCAACTTCACATGGACCCTCGTCGCCGTGTATGGGGCAGCCCAGGATGACC
TCAAGGCTGATTTTCTCCGTGAATTGGTTAATCTGGCGAAAGATAATCCCTACCCCATTCTTATAGGAGGGGATTTCAAT
TTGCTTCGTTTTCCAAATGAGAAAAGCCGTGGTAGGTTTGATAATCATTGGCCTTTCCTTTTCCATGCTGTCATCGACAG
TCTCGATCTGCGAGAGGTTTCCATGATTGGAAGACAATTCACTTGGGCGAACAGTCTTCCGGAACCAACATACGAGAAAC
TAGATCGCGTTTTAATGGATACTGACTGGGAATCTAAATTTCCTATGGTGTCTGTTCGTGCTCTACCTCGTATCGAGGCC
ATATCAGACCACGCAGCAATTCTCCTAACTACTGGTTTGCCACGACCACAACATAGACGCAAGTTCAAGTTTGAACTTGG
TTGGTTGCTCCGGGATGGCTTCCATGACATGGTCAAGAAGGTATGGGAGAAACCGGTGGCCGGG-
>chr4A_2008
TAAGCA--------------------------------------------------------------------------
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-------------------TTTATTCATTGCGGAGTGTAATAGGGAATACAATTTAGA-TTTTTT-GGCTATCTCTGAAA
CGGGGAGACGTGACTTCTCAGTAAGTCTGCTTAACCGTCTTTCTGGCGGGATAGAATACACTTGGGTTTCACGACCGCCT
AGAGGTCGTTCTGGGGGCATCTTACTTGGCGTAAACACGGGGACTATGAATGTTTTGGCTAGTTCGGATGGTGAGTTTCA
CGTTAAACTCCATATTCGTAACAAGGCCGACAACTTCACATGGACCCTCGTCGCCGTGTATGGGGCAGCCCAGGATGAAC
TCAAGGCTGATTTTCTCCGTGAATTGGTTAATCTGGCGAAAGATAATCCCTACCCCATTCTTATAGGAGGGGATTTCAAT
TTGCTTCGTTTTCCAAATGAGAAAAGCCGTGGTAGGTTTGATAATCATTGGCCTTTCCTTTTCAATGTTGTCATCGATAG
TCTCGATCTGCGAGAGGTTTCCATGATTGGAAGACAATTCACTTGGGCGAACAGTCTTCCGGAACCAACATACGAGAAAC
TAGATCGCGTTTTAATGGATACTGACTGGGAATCTAAATTTCCTATGGTGTCTGTTCGTGCTCTACCTCGTATCGAGGCC
ATATCAGACCACGCACCAATTCTCCTAACTACTGGTTTGCCACAACCACAACATAGACGCAAGTTCAAGTTCGAACTTGG
TTGGTTGCTCCGGGATGGCTTCCATGACATGGTCAAGAAGGTATGGGAGAAACCGGTGGCCGGG-
>chr3B_2008
TAAGCA--------------------------------------------------------------------------
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-------------------TTTATTCATTGCGGAGTGTAATAAGGAATACAATTTAGA-TTTTTT-GGCTATCTCTGAAA
CGGGGAGACGTGACTTCTCAGTAAGTCTTCTTAACCGTCTTTCTGGCGGGATAGAATACACTTGGGTTTCACGACCGCCT
AGAGGTCGTTCTGGGGGCATCTTACTTGGCGTAAACACGGGGACTATGGATGTTTTGGCTAGTTCGGATGGTGAGTTTCA
CGTTAAACTCCATATTCGTAACAAGGCCGACAACTTCACATGGACCCTCGTCGCCGTGTATGGGGCAGCCTAGGATGAAC
TCAAGGCTGATTTTCTCCGTGAATTGGTTAATCTGGCGAAAGATAATCCCTACCCCATTCTTATAGGAGGGGATTTCAAT
TTGCTTCGTTTTCCAAATGAGAAAAGCCGTGGTAGGTTTGATAATCATTGGCCTTTCCTTTTCAATGCTGTCATCGACAG
TCTCGATCTGCGAGAGGTTTCCATGATTGGAAGACAATTCACTCGGGCGAACAGTCTTCCGGAACCAACATACGAGAAAC
TAGATCGCGTTTTAATGGATACTGACTGGGAATCTAAATTTCCTATGGTGTCTGTTCGTGCTCTACCTCGTATCGAGGCC
ATATCAGACCACACACCAATTCTCCTAACTACTGGTTTGCCACGACCACAACATAGACGCAAGTTCAAGTTCGAACTTGG
TTGATTGCTCCGGGATGGCTTCCATGACATGGTCAAGAAGGTATGGGAGAAACCGGTGGCCGGG-
>chr1D_2008
TAAGCA--------------------------------------------------------------------------
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-------------------TTTATTCATTGCGGAGTGTAATAGGGAATACAATTTAGA-TTTTTT-GGCTATCTCTGAAA
CAGGGAGACGTGACTTCTCAGTAAGTCTGCTTAACCGTCTTTCTGGCGGGATAGAATACACTTGGGTTTCACGACCGCCT
AGAGGTCGTTCTGGGGGCATCTTACTTGGCGTAAACATGGGGACTATGGATTTTTTGGCTAGTTCGGATGGTGAGTTTCA
CGTTAAACTCCATATTCGCAACAAGGCCGACAACTTCACATGGACCCTCGTCGCCGTGTATGGGGCAGCCCAGGATGAAC
TCAAGGTTGATTTTCTCCGTGAATTGGTTAATCTGGCGAAAGATAATCCCTACCCCATTCTTATAGGAGGGGATTTCAAT
TTGCTTCGTTTTCCAAATGAGAAAAGCCGTGGTAGGTTTGATAATCATTGGCCTTTCCTTTTCAACGATGTCATCGACAC
TCTCGATCTGCGAGAGGTTTCCATGATTGGAAGACAATTCACTTGGGCGAACAGTCTTCCGGAACCGACATACGAGAAAC
TAGATCGCGTTTTAATGGATACCGACTGGGAATCTAAATTTCCTATGGTGTCTGTTCGTGCTCTACCTCGTTTCGAGGCC
ATATCAGACCACACACCAATTCTCCTAACTACTGGTTTGCCACGACCACAACATAGATGCAAGTTCAAGTTCGAACTTGG
TTGGTTGCTCCGGGATGGCTTCCATGACATGGTCAAGAAGGTATGGGAGAAACCGGTGGCCAGGG
>chr6D_2008
TAAGCA--------------------------------------------------------------------------
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-------------------TTTATTCATTGCGGAGTGTAATAGGGAATACAATTTAGA-TTTTTT-GGCTATCTCTGAAA
CGGGGAGACGTGACTTCTCAGTAAGTCTGCTTAACCATCTTTCTGGCGGGATAGAATACACTTGGGTTTCACGACCGCCT
AGAGGTCGTTCTGGGGGCATCTTACTTGGCGTAAACACGGGGACTATGGATGTTTTGGCTAGTTCGGATGGTGAGTTTCA
CGTTAAACTCCATATTCGCAACAAGGCCGACAACTTCACATGGACCCTCGTCGCCGTGTATGGGGCAGCCCAGGATGAAC
TCAAGGTTGATTTTCTCCGTGAATTGGTTAATCTGGCGAAAGATAATCCCTACCCCATTCTTATAGGAGGGGATTTCAAT
TTGCTTCGTTTTCCAAATGAGAAAAGCCGTGGTAGGTTTGATAATCACTGGCCTTTCCTTTTCAATGCTGTCATCGACAG
TCTCGATCTGCGAGAGGTTTCCATGATTGGAAGACAATTCACTTGGGCGAACAGTCTTCCGGAACCGACATATGAGAAAC
TAGATCGCAATTTAATGGATACCGACTGGGAATCTAAATTTCCTATGGTGTCTGTTCGTGCTCTACCTCGTATCGAGGCC
ATATCAGATCACGCACCAATTCTCCTAACTACTGGTTTGCCACGACCACAACATAGACGCAAGTTCAAGTTCGAACTTGG
TTGGTTGCTCCGGGATGGCTTCCATGACATGGTCAAGAAGGTATGGGAGAAGCCGGTGGCCGGGC
>chr6D_2009
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---------------AACACTTATCCATTGCGGAATGTAATAGGGAATACAATTTAGATTTC-TT-GGCTATCTCTGAAA
TAGGGAAACGTGATTTCTCAGTAAGTCTGCTAAACCGTCTGTCTGGCGGGATAGACTTTACTTGGGTTTCTCGACCGCCT
AGAGGTCGTTCTGGGGGCATTTTACTTGGCGTAAATACAGGGACTATGGATGTTTTGGCTAGTTCGGATGGTGGGTTTCA
CATTAAACTCCATATTCGCAACAAGGCCGACAACTTCACATGGACCCTCGTTGCCGTGTATGGGGCAGCCCAAGACGAGT
TCAAGGCTGATTTTCTCCGTGAATTGGTTAATCTGGCAAAAGATAATCCCTACCCCATTCTTATAGGTGGGGATTTTAAT
TTGCTTCGATTCCCAAATGAGAAAAGCCGCGGTAGGTTTGATAATCATTCGCCTTTCCTTTTCAACGCTGTCATCGACAG
TCTAGATCTGCGAGAGGTTTCCATGATTGGAAGACAATTCACTTGGGCGAACAGTTTTCCAGAACCGACATATGAGAAAC
TAGATCGCGTTTTAATGGATACCGACTAGGAATCTAAATTTCCCATGGTGTCTGTTCGTGCTCTACCTCGTATTGAGGCT
ATATCAGACCACACACCCATTCTCCTAACTACTGGTTTGCCACGACCACAACATAGACGCAAGTTCAAATTTGAACTTGG
GTGATTGCTTCGGGATGGCTTCCATGATATGGTCAAGGAGGTGTGGGAGAAACCAGTGGCCGGGC
>chr2D_2009
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---------------AACATTTATTCATTGCGGAATGTAATAGAGAATACAATTTAGATTTTTTT-GGCTATCTCTGAAA
CGGGGAGACGTGATTTCTCAGGAAGTCTTCTTAACCGTCTTTCTGGCGGGATAGACTTTACTTGGGTTTCACGACCGCCT
AGAGGTCGTTCTGGGGGCATTTTACTTGGCGTAAATACAGGGACTATGGATGTGTTGACTAGTTCGGATGGTGAGTTTCA
CGTTAAACTCCATATTCGCAACAAGGCCGACAACTTCACATGGACCCTCGTCGCCGTGTATGGGGCAATCCAGGATGAGT
TCAAGGCCGATTTTCTCCGTGAATTGGTTAATCTGGCGAAAGATAATCCCTATCCCATTCTTATAGGTGGGGATTTCAAT
TTGCTTCGATTTCCAAATGAGAAAAGCCGCGGTAGGTTTGATAATCATTGGCCTTTTCTTTTCAATGCTGTCATCGACAG
TCTAGATCTGCGAGAGGTTTCCATGATTGGAAGACAATTCACTTGGGTGAACAGTCTTCCCAAGCCGACATGTGAGAAAC
TAGATCGCGTCTTAATGGATACCGACTGGGAATCTAAATTTTCTATGGTGTTTGTTCGTGCTCTACCTCGTATCGAGGCT
ATATCAGACCACGCACCCATTCTCCTAACTACTGGGTTGCCACGACCACAACATAGACGCAAGTTCAAGTTTGAACTTGG
GTGGTTGCTTCGGGATGGCTTCCATGACATGGTTAAGGAGGTGTGGGAGAAACCAGTAGCCGGGC
>chr3A_2009
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---------------AACATTTATTCATTGCGGAGTGTAATAGGAAATACAATTTAGA-TTTTTT-GGCTATCTCTGAAA
CGGGGAGACGTGACTTCTCCGTAAGTCTGCTTAACCGTCTTTCTGGTGGGATAGAATACACTTGGGTTTCACGACCGCCT
AGAGGTCGTTCTGGGGGCATCTTACTTGGCGTAAACACGGGGACAATGGATGTTTTGGCTAGTTCGGATGGTGAGTTTCA
CGTTAAACTCCATATTCGCAACAAGGCCGACAACTTCACATGGACCCTCGCCGCCGTGTATGGGGCAGCCCAGGATGAAC
TCAAGGCTGATTTTCTCCGTGAATTGGTTAATCTGGCGAAAGATAATCCCTACCCCATTCTTATAGGAGGGGATTTCCAT
TTGCTTCGATTTCCAAATGAGAAAAGCCGCGGTAGATTTGATAATCATTGGCCTTTCCTTTTCAACGATGTCATCGACAG
TCTCGATCTGCGAGAGGTTTCCATGATTGGAAGACAATTCACTTGG-CGAACAGTCTTCCGGGACCGGCATACGAGAAAC
TAGATCGCGTTTTAATGGATACCGACTGCGAATCTAAATTTCCTATGGTGTCTGTTCATGCTCTACCTCGTATCGAGGCC
ATATCAGACCACGCACCAATTCTCCTAACTACTGGTTTGCCACGACCACAACATAGACGCAAGTTCAAGTTCGGACTTGG
TTGGTTGCTCCAGGATGGCTTCCATGACATGGTCAAGGAGGTATGGGAGAAACCGGTGGCCGGGC
>SNPs
S--SS--SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS--------S
---S--S---S--S----S-S-S-S-S--------S-------------S-------S----S------S----------
---------S----S--S----------SSS-S-----SSS--S--------S----S---S----------S-------
-------S-S---S-------S-S--S--------S------------------------S-----S--S-----S---S
--S---------S---------------------------SSS-S--SS---S-------S-----------SS--S---
-----------------------------------------------------S----------------------S---
---------------------------------------------------S--------S---S-------S-------
----------S---S---------------------S--------------------S----------------------
---------------------------------SSSSSSSSSSSSSSSSSS--S-------S-----------S------
-----S---S---S---------------S--S----S------------------------------------------
---------------------------------S-----------------------------------S----------
S----SS---S-----S-----------------------------S-SS---S-S-----------SS-----------
--------S---------------SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSS-------------------------S------------------------S--------------
----------------S--------------------------------------------S------------------
----------------------------------------------------------------------S---------
-S----------------S-S---------------------------------S------S--------------S---
-----S------------------S-------------------------------------------------------
------S---------S------------------------------------------------S--------------
-------S------------S----S----------------------------------S--S----------------
-------------------------S-------------------S----------S----S------------------
--------------------SS----------------------------S-----------------------------
--------------------------------------S-------S------------------
>forward_720
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------------------------------------------------------------TCCTCGCCTGGTGGTACATA
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>reverse_2686
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---------------------------------------------AGGTGTCTGTTTGTGCGCTA---------------
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