>input_sequence_69305
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------------------------------------------------------------------ATGGGGAGCATGGA
CGGCCACCCGCTCCAGGGCAACCACGGCTACGCCCACGTCCCTGCCGGCAGCAACAACGACGAGGACGACGCGTCGCCGC
CGCCCTCGGCCGGTGGGGGGTCCTCGGGTTCGGGGCGCCGGCCGCGCGGCAGGCCCCCGGGGTCCAAGAACAAGCCCAAG
CCCCCCGTCGTGGTGACGCGGGAGAGCCCCAACGCGATGCGCTCCCACGTGTTGGAGATCGCCAGCGGGGCCGACATCGT
CGAGGCCATCGCGGCCTTCTCCCGCCGCAGGCAGCGCGGCGTCTCAGTCCTCAGCGGGAGCGGCGCCGTCACCAACGTCA
CGCTGCGCCAGCCCGCAGGGACCGGGGCGGCCGCCGTCGCCCTAAGGGGGCGGTTCGAGATACTCTCCCTGTCTGGCGCC
TTCCTCCCGGCGCCGGCGCCGCCCGGGGCGACGGGGCTCGCCGTGTACCTCGCGGGCGGGCAGGGGCAGGTGGTCGGGGG
CAGCGTGATGGGGGAGCTGCTCGCGTCGGGCCCCGTCATGGTGATCGCGGCCACGTTCGGCAACGCCACGTACGAAAGGC
TGCCGCTGGATCAAGACGCTGAGGAGGGCGCCGTGCTGTCCGGGTCGGAGGGCGCCGCCACGCAGCTGGAGCAGCAGGGC
AGCGGAGGCGCCGCCGTGCCCCCACCGATGTACGCCGTGCCGCAGACGCCGCCCGGCGACATGTTCGGGCAGTGGGGACA
GGCAGCCGTGGCGCGGCCTCCACCGACGTCATTCTAG-------------------------------------------
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>chr4B_1_TraesCS4B01G209800
CGAAAATTTACACGCTACTTGCACACTCGATCATCGTTGATGCCTAAAAAATTCTGAATTTT---------GTTACTACT
TTTTATAAATTTACTCTTCATCGGGTGTAGATGAGCCCGGGCTCAGACTTGAATTACCAGTCTTATAAGGACTAGTCGAT
TCTAATATATGGCGTTTGGTATTTTCACAAGAGAAGTGTGATTTTCAAATTGAGCACATGCATGTAAAGTCGTATGTGTT
------GAACACATCCTCCAAACTAAAAAGCGGGAATCGACTATGGATGGGTTGGCACTTGGCAGGGCAGGCAAAAGAGG
GAAGGGTCATTATGGACTCCGTCGTCTTGGTCCATGGCATTCAAAAGGGGCACGTGCTTAAACAGCTCCGTGCTTCCAAA
GGCCTCTCGGCGCGCAGCTGTTCCGTTTTCGTCCATTTGCACGACATTTTTTCAAAGCCCACCTGACCCGATCAGAATGC
CATGCCTCCCTCTCCTAAACACTGCTTAACGTGCGTACGCATGTGGCCACTGCCCACTGGGCCACACGCTCACACTAACT
AACCGCGACGTACTACCAGCGCCGTTACATTTGCCACAGGGCCGTGCCGTGCATATATACTGCCTCGGTACCCAGTCGGG
AGCCAAGAGATGAGCCTCCCGTTTGATCGTAGCAGAGTGGTTTTGATTGTGCCAGTGCGGCTACGACTGCTACCCCGCGC
CCGCGCCCGCGCCGACGAGAGCAGAAGAAGCGAAGCGAA-TTCTAGAAGGAGCCGTAAATAAATACTCCTCCT---AGCC
GGTGAGAGCAACGCCAACGCCCATAGTTCCGTCCCATACCATACAACCACTAGCTAGCAACCAGAGATTCACT---GCCG
CCGCCGCCGCCGCTTGCATTGGAGGCGCTCTTGCAGGAGCCTAAGGCT----GTGCCATCTTCGTTCTTCGGCGACGACC
GCGAAAATTGTAGGGCTGGCAGACTGGTGGCCGGCCGGCGCGGCGGCCGAAGCCCAAGCCCAAGAGATGGGGAGCATGGA
CGGCCACCCGCTCCAGGGCAACCACGGCTACGCCCACGTCCCTGCCGGCAGCAACAACGACGAGGACGACGCGTCGCCGC
CGCCCTCGGCCGGTGGGGGGTCCTCGGGTTCGGGGCGCCGGCCGCGCGGCAGGCCCCCGGGGTCCAAGAACAAGCCCAAG
CCCCCCGTCGTGGTGACGCGGGAGAGCCCCAACGCGATGCGCTCCCACGTGTTGGAGATCGCCAGCGGGGCCGACATCGT
CGAGGCCATCGCGGCCTTCTCCCGCCGCAGGCAGCGCGGCGTCTCAGTCCTCAGCGGGAGCGGCGCCGTCACCAACGTCA
CGCTGCGCCAGCCCGCAGGGACCGGGGCGGCCGCCGTCGCCCTAAGGGGGCGGTTCGAGATACTCTCCCTGTCTGGCGCC
TTCCTCCCGGCGCCGGCGCCGCCCGGGGCGACGGGGCTCGCCGTGTACCTCGCGGGCGGGCAGGGGCAGGTGGTCGGGGG
CAGCGTGATGGGGGAGCTGCTCGCGTCGGGCCCCGTCATGGTGATCGCGGCCACGTTCGGCAACGCCACGTACGAAAGGC
TGCCGCTGGATCAAGACGCTGAGGAGGGCGCCGTGCTGTCCGGGTCGGAGGGCGCCGCCACGCAGCTGGAGCAGCAGGGC
AGCGGAGGCGCCGCCGTGCCCCCACCGATGTACGCCGTGCCGCAGACGCCGCCCGGCGACATGTTCGGGCAGTGGGGACA
GGCAGCCGTGGCGCGGCCTCCACCGACGTCATTCTAGCACTGCACCGGCGAGGCGAATCGCGCGCGCAGTTCTTCTACCT
AGCTAGTTTAGCTTTCTGCTTCTTCCCTAGTTGTTTGCCTAGCTTCCATTATCTTGTTAATTAATGTGCTATGTCATGCA
TGGGTACTTGTATGATAT-TTTTTTTCCTTTTTTGTTTTCATTCCTCTTCCGTCTTTGAAGCTTGGGAATGTGAAATTCC
TACACGAATCAAGAACTCAAGGAACAATGGCTGCTCCTCAATCAGCTTCTTATAATTTCCAATGATCAATTGGCGTTCGC
CTCCTAATGTACAATGGTCGATTCTTATAATTCATTTAACTGGATAGCATGTCCAACCGCCCCTCGCGCGGCTGGTGTGG
TGAGCAATCCTCCAATCATCAGAAAAATTAGATAAGCATGTTCAATCCAGTTCCATAAGAAACAATTATTCCGGCTTCTT
GAGCTATGTACGGCCATGCATGCTTGTATGGTTGTATGCTTGGTTTGGGATATGCAAGTTCTTGGTTCACGATAGCTATA
TGTGAGCCGCCTGAATTTGCAATATGGGTGAGTCGATTTTTGGAAGAGGAAGAAATTCATCGGAAGGAAGGAAGGGATGA
AGGAAGGAGCAGCCATCGGCGATCTATCTTAGGGTGGCAGGCTCGTCGGCGATTTATTTTAGGGGTGGGGGGCGGGCATG
CAGGTTCGTCGAAAATTTTTGTTCCTCATCGGGTTAGAGGGATGGTCGTGGGTGGCGTCAGCACGACGGTGGGTGATGGT
TGGGGAGGAGGGCGGGGCGACGAGGCAGGCGCAGGAGCATCGTCAGCAGCGGGCGATGGCAACGGGCGGTTGGGCCGGTG
GTATGTCGGGCGGTTTGAGTAAAAAGATGAACAAAAGATTTGGGCTAGAGGTTGAAGAAAGATATATAATCGTTCATTTT
TCATCCAACGACCTAAAACAAATCGATGGACTCAAATCTTTTTCCATGCGACTGTCATCTAGCCACTCCCTTCGCGTG
>chr4D_1
CGAAAATTTGCACCCTCCTTGCACACTCGATCACAGTCGATACCTAAAAAATTCTGAATTTTTTGAATTTTGTTACTATT
TTATATGAAATTATTGTTCATCGGGTGTAGATGAGCCCGTGCTCATACTTGAATTACCGGTCTTATAAGGACTAGTCGAT
TCTAATATATGACGTTTGGTATTTTCACAAGAGAAGTGTGATTTTCAAATTGAGCACATGCATGTAAAGTCATATGTGTT
------GAACACATCCTCCAAACTAAAAAGCGGGAATCGACTATTTGCACGA----------------------------
-------CATTATGGACTCCGTGGTCTTCGTCCATGGCATTCAAAAGGAGCACGTGGTTAAACAGCTCCGTGCTTCCAAA
GGCCTCTCGGCGCGCAGCTGTTCCGTTTTCGTCCATTTGCACGACATTTTTTCAAAGCCCACCTGACCCGATCAGAAGGC
CATGCCTCCCTCTCCTAAACACTGCTTAACGTGTGTACGCATGTGGCCACTGCCCACTGGGCCACGCGCTCAC--TAACT
AACCGCGACGTACTACCAGTGCCGTTACATCTGCC------------CGTGCATATATACTGCCTCGGTACCCAGTCGGG
AGCCAAGAGATGAGCCTCCCGTTTGATCGTAGCAGAGTGGTTTTGATTGTGCCAGTGCGACTACGACTGCTACCCCGCGC
CCGCGCC------GACGAGAGCAG-AGAAGCGAAGCGAA-TTCTAGAAGGAGCCGTAAATAAATACTCCTCCT---AGCC
GGTGAGAGCAACGCCAACGCCCATAGTTCCGTCCCATACCACACAACCACTAGCTAGCAACCAGAGACTCACTGCCGCCG
CCGCCGCCGCTGCTTGCATTGGAGGCGCT--------AGCCTAAGGCT----GTGCCATCTTCGTTCTTCGACGACGACC
GCGAAAATTGTAGGGCTGGCAGACTGGTGGCCGGCCGGCGCGGCGGCCGAAGCCCAAGCCGAGGAGATGGGGAGCATGGA
CGGCCACCCGCTCCAGGGCAACCACGCCTACGCCCACGTCCCTGCCGGCAGCAACAACGACGAGGACGACGCGTCGCCGC
CGCCCTCGGCCGGCGGGGGGTCCTCGGGGTCGGGCCGCCGGCCGCGCGGCAGGCCCCCGGGGTCCAAGAACAAGCCCAAG
CCGCCCGTGGTGGTGACGCGGGAGAGCCCCAACGCGATGCGCTCCCACGTGCTGGAGATCGCCAGCGGGGCCGACATCGT
CGAGGCCATCGCGGCCTTCTCCCGCCGCAGGCAGCGCGGCGTCTCCGTCCTCAGCGGGAGCGGCGCCGTCACCAACGTCA
CGCTGCGCCAGCCCGCGGGGACCGGGGCGGCCGCCGTCGCCCTGCGGGGGCGGTTCGAAATACTCTCCCTGTCCGGCGCC
TTCCTCCCGGCGCCGGCGCCGCCCGGGGCGACGGGGCTCGCCGTCTACCTCGCGGGCGGGCAGGGGCAGGTGGTCGGAGG
CAGCGTGATGGGGGAGCTGCTCGCGTCGGGCCCCGTCATGGTGATCGCGGCCACGTTCGGCAACGCCACGTACGAGAGGC
TGCCGCTGGATCAAGACGCCGAGGAGGGCGCTGTGCTGTCCGGGTCGGAGGGCGCCGCCACGCAGCTGGAGCAGCAGGGC
AGCGGGGGCGCCGCCGTGCCCCCGCCGATGTACGCCGTGCCGCAGACGCCGCCCAGCGACATGTTCGGGCAGTGGGGGCA
GGCGGCCGTGGCGCGGCCTCCGCCGACGTCATTCTAGCGCTGCACCGGCGAATCC--TCGCGCGCGCGGTTCCTCTACCT
AGCTAGTTTAGCTTTCTGCTTCTTCCCTAGTCGTTTGCCTAGCTTCCATTATCTTGTTAATTAATGTGCTATGTCATGCA
TGGGTACTTGTATGGTATATTTTTTCCCTTTTTTGTTTTCATTCCTCTTCCGTCTTTGAAGCTTGGGAATGTAAAATTCC
TACAGGTATCAAGAACCCAACGAACAATGGTTGCTCGTCAATTAGCTTCTTA--ATTTCCAATGATCAATTGGTTTTCGC
CTCCTAATTTCCAATGATCGATTCTTA-----------------------------------------------------
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>chr4A_2
-GAAAATTTACACGCTCCTTGCACACTCGATCATCGTCGATGCCTAAAAAATTCTGATTTTTTTGAATTTTGTTAGTATT
TT-TATGAATTTGCTGTTCATCAGGTGTAGATGAGCCCGGGCTCAGACTTGAATTACCAGTCTTATAAGGACTAGTCGAT
TCTAATATATGGCGTTTGCTATTTTCACAAGAGAGGTGTGATTTTCAAATTGAGCACATGCATGTAAAGTCGTATGTGTT
GAACTTGAACACATCCTGCACACCAAAAAGCGGGAATCAACCATGGG-----------TTGGCAGGGCAGGCAAA-GAGG
GAAGGGTCATTATGGACTCCGTCGTCTTCGTC-ATGGCATTCAAAAGAGGCACGTGCTTAAACAGCTCCGTGCTTCCGAA
GGCCTCTCGGCGCGCAGCTGTTCCGTTTTCGTCCATTTGCACGACATTTTTTCAAAGCCCACCTGACCCGATCAGAAGGC
CATGCCTCCCTCTCCTAAACACTGCTTAACGTGCGTACGCATGTGGCCACTGCCCACTGGCCGGGTCA--CAC--TAACT
AACCGCGACGTACTACCAGTGCCGTTACATTTGCCACAGGGCCGTACCTTGCATATATACTGCCTCGGTACCCAGTCGGG
AGCCAAGCGATGAGCGTCCCGTTTGATCGTAGCAGAGTGGTTTCGATTGTGCGAGTGCGACTACGACTGCTACCCCGCGC
CCGCGCC------GACGAGAGCGG-AGAAGCGAAGCGAATTTCTAGAAGGAGCCGTAAATAAATACTCCTCCTCCTAGCC
GGTGAGAGCAACGCCAACGCCCATAGTTCCGTCCCATACCATACAACCACTCGCTAGCAACCAGAAACTCACT---GCCG
CCGCCGCCGCCGCTTGCATTGGAGAAGCTCTTGCAGGAGCCTAAGGCTGTGTGTGCCATCTTCGTTCCTCGGCGACGACC
GCGAAAATTGTAGGGCTGGCAGATTGGTGGCCGGCCGGCGCGGCGGCCGAAGCCCAAGCCGAGGAGATGGGGAGCATGGA
CGGCCACCCGCTCCAGGGCAACCACGCCTACGCCCACGTCCCTGCCGGCAGCAACAACGACGAGGACGACGCGTCGCCGC
CGCCCTCGGCCGGCGGGGGCTCCTCGGGGTCGGGCCGCCGGCCGCGCGGCAGGCCCCCGGGGTCCAAGAACAAGCCCAAG
CCGCCCGTGGTGGTGACGCGGGAGAGCCCCAACGCGATGCGCTCCCACGTGCTGGAGATCGCCAGCGGGGCCGACATCGT
GGAGGCCATCGCGGCCTTCTCCCGCCGCAGGCAGCGCGGCGTCTCCGTCCTCAGCGGGAGCGGCGCCGTCACCAACGTCA
CGCTGCGCCAGCCCGCGGGGACCGGGGCGGCCGCCGTCGCCCTAAGGGGGCGCTTCGAGATACTCTCCCTGTCCGGCGCC
TTCCTCCCGGCGCCGGCGCCGCCCGGGGCGACGGGGCTCGCCGTCTACCTCGCCGGCGGGCAGGGGCAGGTGGTCGGGGG
CAGCGTGATGGGGGAGCTTCTCGCGTCCGGCCCCGTCATGGTGATCGCGGCCACGTTCGGCAACGCCACGTACGAGAGGC
TGCCGCTGGATCAAGACGCCGAGGAGGGCGCCGTGCTGTCCGGGTCGGAGGGCGCCGCCACGCAGCTGGAGCAGCAGGGC
AGCGGGGGCGCCGCCGTGCCCCCGCCGATGTACGCGGTGCCGCAGACGCCGCCTAGCGACGTGTTCGGGCAGTGGGGGCA
GGCGGCCGTGGCGCGGCCTCCGCCGACGTCATTCTAGCGCTGCACCGGCGAGGTGAATCGCGCGCGCGGTTCCTCTACCT
AGCTAGTTTAGCTTTCTGCTTCCTCCCTAGTTGTTTGCCTAGCTTCCATTATCTTGTTAATTAATGTGCTATGTCATGCA
TGGGTACTTGTATGATATTTTTTTTCCCTTTTTTGTTTTCATTCCTCTTCCGTCTTTGAAGCTTGGGAATGTGAAATTCC
TACAGGTATCAACAACCCAACGAACAATGGTTGCTCGTCAATTAGCTTCTTATAATTTCCAATGATCAATTGGTGTTCGC
CTCCTAATTTCCAATGATCGATTCTTATAATGCATTTAACTACTATAGAT------------------------------
----------------------------------AGCATGTACAGTCCAGTTTCATAAGATCCAA--------GCTTCTT
GAGGTATGTACGGCCATGCATGCTTGTATGGTTGTATGCTTGGTTTGGGATATGCAGGCTTCTGGTT-------------
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>SNPs
----------------S--------------------S----------------------------------------S-
--S---S--------S----------------------------------------------------------------
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----------------------------------------------SSSS-SSSSSSS-----------------S----
----------------------------S---------------------------------------------------
-----------------------------------------------------------------------------S--
-----------------------------------------------------------------S-------SS-----
-------------------S-------------------------S----------------------------------
-----------------------------------------------------------S--------------------
-------SSSSSS-----------S-------------------------------------------------------
-------------------------------------------------------------------S------------
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------------------------------------------------------------S-S-----------------
--------------------------S-----------------------------------------------------
-------------S--------------S-----S---------------------------------------------
--S-----S------------------------------------------S----------------------------
---------------------------------------------S----------------------------------
----------------S--------------------------------------------------------S------
--------------------------------------------S-----------------------------------
---------------------------------------------------------------------------S----
-------------------S------------------------------------------------------------
-----S-----------------S------------------------------S----------------------S--
---S-----------------S----------------S----------------------------S----S-------
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-------------------------S------------------------------------------------------
----S-S---------S---S---------S-----S-----S------------------------------S------
--------S-S-----S--------------S---------SSSSSSS--SSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS-------S--S-------S-------SS---SSSSSSSS-------
---S----------------------------------------------------S-S-SS-----SSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
>forward_700
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----------------------------------------TTTTGATTGTGCCAGTGCGG--------------------
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>reverse_2153
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------------------------------------------------------------------------TGGTGTGG
TGAGCAATCCTC--------------------------------------------------------------------
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