>input_sequence_69303
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--------------------------------------------------------------------ATGGGGAGCATG
GACGGCCACCCGCTCCAGGGCAACCACGCCTACGCCCACGTCCCTGCCGGCAGCAACAACGACGAGGACGACGCGTCGCC
GCCGCCCTCGGCCGGCGGGGGCTCCTCGGGGTCGGGCCGCCGGCCGCGCGGCAGGCCCCCGGGGTCCAAGAACAAGCCCA
AGCCGCCCGTGGTGGTGACGCGGGAGAGCCCCAACGCGATGCGCTCCCACGTGCTGGAGATCGCCAGCGGGGCCGACATC
GTGGAGGCCATCGCGGCCTTCTCCCGCCGCAGGCAGCGCGGCGTCTCCGTCCTCAGCGGGAGCGGCGCCGTCACCAACGT
CACGCTGCGCCAGCCCGCGGGGACCGGGGCGGCCGCCGTCGCCCTAAGGGGGCGCTTCGAGATACTCTCCCTGTCCGGCG
CCTTCCTCCCGGCGCCGGCGCCGCCCGGGGCGACGGGGCTCGCCGTCTACCTCGCCGGCGGGCAGGGGCAGGTGGTCGGG
GGCAGCGTGATGGGGGAGCTTCTCGCGTCCGGCCCCGTCATGGTGATCGCGGCCACGTTCGGCAACGCCACGTACGAGAG
GCTGCCGCTGGATCAAGACGCCGAGGAGGGCGCCGTGCTGTCCGGGTCGGAGGGCGCCGCCACGCAGCTGGAGCAGCAGG
GCAGCGGGGGCGCCGCCGTGCCCCCGCCGATGTACGCGGTGCCGCAGACGCCGCCTAGCGACGTGTTCGGGCAGTGGGGG
CAGGCGGCCGTGGCGCGGCCTCCGCCGACGTCATTCTAG-----------------------------------------
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>chr4A_1_TraesCS4A01G094700
CATGAAAATTTACACGCTCCTTGCACACTCGATCATCGTCGATGCCTAAAAAATTCTGATTTTTTTGAATTTTGTTAGTA
TTTT-TATGAATTTGCTGTTCATCAGGTGTAGATGAGCCCGGGCTCAGACTTGAATTACCAGTCTTATAAGGACTAGTCG
ATTCTAATATATGGCGTTTGCTATTTTCACAAGAGAGGTGTGATTTTCAAATTGAGCACATGCATGTAAAGTCGTATGTG
TTGAACTTGAACACATCCTGCACACCAAAAAGCGGGAATCAACCATGGG-----------TTGGCAGGGCAGGCAAA-GA
GGGAAGGGTCATTATGGACTCCGTCGTCTTCGTC-ATGGCATTCAAAAGAGGCACGTGCTTAAACAGCTCCGTGCTTCCG
AAGGCCTCTCGGCGCGCAGCTGTTCCGTTTTCGTCCATTTGCACGACATTTTTTCAAAGCCCACCTGACCCGATCAGAAG
GCCATGCCTCCCTCTCCTAAACACTGCTTAACGTGCGTACGCATGTGGCCACTGCCCACTGGCCGGG----TCACACTAA
CTAACCGCGACGTACTACCAGTGCCGTTACATTTGCCACAGGGCCGTACCTTGCATATATACTGCCTCGGTACCCAGTCG
GGAGCCAAGCGATGAGCGTCCCGTTTGATCGTAGCAGAGTGGTTTCGATTGTGCGAGTGCGACTACGACTGCTACCCCGC
GCCCGCGCC------GACGAGAGCGG-AGAAGCGAAGCGAATTTCTAGAAGGAGCCGTAAATAAATACTCCTCCTCCTAG
CCGGTGAGAGCAACGCCAACGCCCATAGTTCCGTCCCATACCATACAACCACTCGCTAGCAACCAGAAACTCACT---GC
CGCCGCCGCCGCCGCTTGCATTGGAGAAGCTCTTGCAGGAGCCTAAGGCTGTGTGTGCCATCTTCGTTCCTCGGCGACGA
CCGCGAAAATTGTAGGGCTGGCAGATTGGTGGCCGGCCGGCGCGGCGGCCGAAGCCCAAGCCGAGGAGATGGGGAGCATG
GACGGCCACCCGCTCCAGGGCAACCACGCCTACGCCCACGTCCCTGCCGGCAGCAACAACGACGAGGACGACGCGTCGCC
GCCGCCCTCGGCCGGCGGGGGCTCCTCGGGGTCGGGCCGCCGGCCGCGCGGCAGGCCCCCGGGGTCCAAGAACAAGCCCA
AGCCGCCCGTGGTGGTGACGCGGGAGAGCCCCAACGCGATGCGCTCCCACGTGCTGGAGATCGCCAGCGGGGCCGACATC
GTGGAGGCCATCGCGGCCTTCTCCCGCCGCAGGCAGCGCGGCGTCTCCGTCCTCAGCGGGAGCGGCGCCGTCACCAACGT
CACGCTGCGCCAGCCCGCGGGGACCGGGGCGGCCGCCGTCGCCCTAAGGGGGCGCTTCGAGATACTCTCCCTGTCCGGCG
CCTTCCTCCCGGCGCCGGCGCCGCCCGGGGCGACGGGGCTCGCCGTCTACCTCGCCGGCGGGCAGGGGCAGGTGGTCGGG
GGCAGCGTGATGGGGGAGCTTCTCGCGTCCGGCCCCGTCATGGTGATCGCGGCCACGTTCGGCAACGCCACGTACGAGAG
GCTGCCGCTGGATCAAGACGCCGAGGAGGGCGCCGTGCTGTCCGGGTCGGAGGGCGCCGCCACGCAGCTGGAGCAGCAGG
GCAGCGGGGGCGCCGCCGTGCCCCCGCCGATGTACGCGGTGCCGCAGACGCCGCCTAGCGACGTGTTCGGGCAGTGGGGG
CAGGCGGCCGTGGCGCGGCCTCCGCCGACGTCATTCTAGCGCTGCACCGGCGAGGTGAATCGCGCGCGCGGTTCCTCTAC
CTAGCTAGTTTAGCTTTCTGCTTCCTCCCTAGTTGTTTGCCTAGCTTCCATTATCTTGTTAATTAATGTGCTATGTCATG
CATGGGTACTTGTATGATAT-TTTTTTTCCCTTTTTTGTTTTCATTCCTCTTCCGTCTTTGAAGCTTGGGAATGTGAAAT
TCCTACAGGTATCAACAACCCAACGAACAATGGTTGCTCGTCAATTAGCTTCTTATAATTTCCAATGATCAATTGGTGTT
CGCCTCCTAATTTCCAATGATCGAT-------------------------------------------------------
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---------------------------------------------------------------------TCTTATAATGC
ATTTAACTACTATAGAT---------------------------------------------------------------
-AGCATGTACAGTCCAGTTTCATAA--------GATCCAAGCTTCTTGAGGTATGTACGGCCATGCATGCTTGTATGGTT
GTATGCTTGGTTTGGGATATGCAGGCTTCTGGTTACTCTCTCTCTCTCTCTCTC--------------------------
---------------------TTTGATTCCTCAATCCAGTGTCTCGGTTTACTTAATTTCACTAAAAGTATTTTAGAAGG
TCTAGAGCCATAGTTTTATGAAAATTTGTTAT-TGAACACCGTGGCGAGATTTGATATCGGGTTCTTCAGATTAATTCAA
GGGTTCAACAACGGCTACTGCGGCTCTAGGGCGCTGGTTCTTAGGGGCACGTTCATGAAGACTTCCTTACTGTCGTCAAC
AAGGGCAGGCCAGCTTCGATATGGGTGGGAGCGGCGACAGCGGCGACAGCGGCGAGTGCGGCTCGTTCTGACGGCAACAG
TAGTTGTTTGGTGCCTGGGACCTTAATGTCATT-----------------------------------------------
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----------------------------------------------------------------TTTATTATGTTTGAGA
TGCTTTCTACTCCTACTTTGGTGAACTTTAATAGTAGATGTTAGTTCTTTTGGCAAAAAAAAAC-TTATTATTGTACTTT
GGCTCAATTTCAGTTGATTTAGCAGCCGGAATTCTGCTGTTTTTCAAACTCAAGCTGTTAAAATTTTACTGACTCTATCC
ACAAGTATGTCGTCCTACAAAGCGTATTGTCAAACT
>chr4B_4
---GAAAATTTACACGCTACTTGCACACTCGATCATCGTTGATGCCTAAAAAATTCTGAATTTTGTTACTAC--------
TTTT-TATAAATTTACTCTTCATCGGGTGTAGATGAGCCCGGGCTCAGACTTGAATTACCAGTCTTATAAGGACTAGTCG
ATTCTAATATATGGCGTTTGGTATTTTCACAAGAGAAGTGTGATTTTCAAATTGAGCACATGCATGTAAAGTCGTATGTG
T------TGAACACATCCTCCAAACTAAAAAGCGGGAATCGACTATGGATGGGTTGGCACTTGGCAGGGCAGGCAAAAGA
GGGAAGGGTCATTATGGACTCCGTCGTCTTGGTCCATGGCATTCAAAAGGGGCACGTGCTTAAACAGCTCCGTGCTTCCA
AAGGCCTCTCGGCGCGCAGCTGTTCCGTTTTCGTCCATTTGCACGACATTTTTTCAAAGCCCACCTGACCCGATCAGAAT
GCCATGCCTCCCTCTCCTAAACACTGCTTAACGTGCGTACGCATGTGGCCACTGCCCACTGGGCCACACGCTCACACTAA
CTAACCGCGACGTACTACCAGCGCCGTTACATTTGCCACAGGGCCGTGCCGTGCATATATACTGCCTCGGTACCCAGTCG
GGAGCCAAGAGATGAGCCTCCCGTTTGATCGTAGCAGAGTGGTTTTGATTGTGCCAGTGCGGCTACGACTGCTACCCCGC
GCCCGCGCCCGCGCCGACGAGAGCAGAAGAAGCGAAGCGAA-TTCTAGAAGGAGCCGTAAATAAATACTCCTCCT---AG
CCGGTGAGAGCAACGCCAACGCCCATAGTTCCGTCCCATACCATACAACCACTAGCTAGCAACCAGAGATTCACT---GC
CGCCGCCGCCGCCGCTTGCATTGGAGGCGCTCTTGCAGGAGCCTAAGGCT----GTGCCATCTTCGTTCTTCGGCGACGA
CCGCGAAAATTGTAGGGCTGGCAGACTGGTGGCCGGCCGGCGCGGCGGCCGAAGCCCAAGCCCAAGAGATGGGGAGCATG
GACGGCCACCCGCTCCAGGGCAACCACGGCTACGCCCACGTCCCTGCCGGCAGCAACAACGACGAGGACGACGCGTCGCC
GCCGCCCTCGGCCGGTGGGGGGTCCTCGGGTTCGGGGCGCCGGCCGCGCGGCAGGCCCCCGGGGTCCAAGAACAAGCCCA
AGCCCCCCGTCGTGGTGACGCGGGAGAGCCCCAACGCGATGCGCTCCCACGTGTTGGAGATCGCCAGCGGGGCCGACATC
GTCGAGGCCATCGCGGCCTTCTCCCGCCGCAGGCAGCGCGGCGTCTCAGTCCTCAGCGGGAGCGGCGCCGTCACCAACGT
CACGCTGCGCCAGCCCGCAGGGACCGGGGCGGCCGCCGTCGCCCTAAGGGGGCGGTTCGAGATACTCTCCCTGTCTGGCG
CCTTCCTCCCGGCGCCGGCGCCGCCCGGGGCGACGGGGCTCGCCGTGTACCTCGCGGGCGGGCAGGGGCAGGTGGTCGGG
GGCAGCGTGATGGGGGAGCTGCTCGCGTCGGGCCCCGTCATGGTGATCGCGGCCACGTTCGGCAACGCCACGTACGAAAG
GCTGCCGCTGGATCAAGACGCTGAGGAGGGCGCCGTGCTGTCCGGGTCGGAGGGCGCCGCCACGCAGCTGGAGCAGCAGG
GCAGCGGAGGCGCCGCCGTGCCCCCACCGATGTACGCCGTGCCGCAGACGCCGCCCGGCGACATGTTCGGGCAGTGGGGA
CAGGCAGCCGTGGCGCGGCCTCCACCGACGTCATTCTAGCACTGCACCGGCGAGGCGAATCGCGCGCGCAGTTCTTCTAC
CTAGCTAGTTTAGCTTTCTGCTTCTTCCCTAGTTGTTTGCCTAGCTTCCATTATCTTGTTAATTAATGTGCTATGTCATG
CATGGGTACTTGTATGATAT-TTTTT-TTCCTTTTTTGTTTTCATTCCTCTTCCGTCTTTGAAGCTTGGGAATGTGAAAT
TCCTACACGAATCAAGAACTCAAGGAACAATGGCTGCTCCTCAATCAGCTTCTTATAATTTCCAATGATCAATTGGCGTT
CGCCTCCTAATGTACAATGGTCGAT-------------------------------------------------------
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---------------------------------------------------------------------TCTTATAATTC
ATTTAACTGGATAGCATGTCCAACCGCCCCTCGCGCGGCTGGTGTGGTGAGCAATCCTCCAATCATCAGAAAAATTAGAT
AAGCATGTTCAATCCAGTTCCATAAGAAACAATTATTCCGGCTTCTTGAGCTATGTACGGCCATGCATGCTTGTATGGTT
GTATGCTTGGTTTGGGATATGCAAGTTCTTGGTT----------------------------------------------
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>chr4D_4
---GAAAATTTGCACCCTCCTTGCACACTCGATCACAGTCGATACCTAAAAAATTCTGAATTTTTTGAATTTTGTTACTA
TTTTATATGAAATTATTGTTCATCGGGTGTAGATGAGCCCGTGCTCATACTTGAATTACCGGTCTTATAAGGACTAGTCG
ATTCTAATATATGACGTTTGGTATTTTCACAAGAGAAGTGTGATTTTCAAATTGAGCACATGCATGTAAAGTCATATGTG
T------TGAACACATCCTCCAAACTAAAAAGCGGGAATCGACTATTTGCACGA--------------------------
---------CATTATGGACTCCGTGGTCTTCGTCCATGGCATTCAAAAGGAGCACGTGGTTAAACAGCTCCGTGCTTCCA
AAGGCCTCTCGGCGCGCAGCTGTTCCGTTTTCGTCCATTTGCACGACATTTTTTCAAAGCCCACCTGACCCGATCAGAAG
GCCATGCCTCCCTCTCCTAAACACTGCTTAACGTGTGTACGCATGTGGCCACTGCCCACTGGGCCACGCGCTCAC--TAA
CTAACCGCGACGTACTACCAGTGCCGTTACATCTGCC------------CGTGCATATATACTGCCTCGGTACCCAGTCG
GGAGCCAAGAGATGAGCCTCCCGTTTGATCGTAGCAGAGTGGTTTTGATTGTGCCAGTGCGACTACGACTGCTACCCCGC
GCCCGCGCC------GACGAGAGCAG-AGAAGCGAAGCGAA-TTCTAGAAGGAGCCGTAAATAAATACTCCTCCT---AG
CCGGTGAGAGCAACGCCAACGCCCATAGTTCCGTCCCATACCACACAACCACTAGCTAGCAACCAGAGACTCACTGCCGC
CGCCGCCGCCGCTGCTTGCATTGGAGGCGCT--------AGCCTAAGGCT----GTGCCATCTTCGTTCTTCGACGACGA
CCGCGAAAATTGTAGGGCTGGCAGACTGGTGGCCGGCCGGCGCGGCGGCCGAAGCCCAAGCCGAGGAGATGGGGAGCATG
GACGGCCACCCGCTCCAGGGCAACCACGCCTACGCCCACGTCCCTGCCGGCAGCAACAACGACGAGGACGACGCGTCGCC
GCCGCCCTCGGCCGGCGGGGGGTCCTCGGGGTCGGGCCGCCGGCCGCGCGGCAGGCCCCCGGGGTCCAAGAACAAGCCCA
AGCCGCCCGTGGTGGTGACGCGGGAGAGCCCCAACGCGATGCGCTCCCACGTGCTGGAGATCGCCAGCGGGGCCGACATC
GTCGAGGCCATCGCGGCCTTCTCCCGCCGCAGGCAGCGCGGCGTCTCCGTCCTCAGCGGGAGCGGCGCCGTCACCAACGT
CACGCTGCGCCAGCCCGCGGGGACCGGGGCGGCCGCCGTCGCCCTGCGGGGGCGGTTCGAAATACTCTCCCTGTCCGGCG
CCTTCCTCCCGGCGCCGGCGCCGCCCGGGGCGACGGGGCTCGCCGTCTACCTCGCGGGCGGGCAGGGGCAGGTGGTCGGA
GGCAGCGTGATGGGGGAGCTGCTCGCGTCGGGCCCCGTCATGGTGATCGCGGCCACGTTCGGCAACGCCACGTACGAGAG
GCTGCCGCTGGATCAAGACGCCGAGGAGGGCGCTGTGCTGTCCGGGTCGGAGGGCGCCGCCACGCAGCTGGAGCAGCAGG
GCAGCGGGGGCGCCGCCGTGCCCCCGCCGATGTACGCCGTGCCGCAGACGCCGCCCAGCGACATGTTCGGGCAGTGGGGG
CAGGCGGCCGTGGCGCGGCCTCCGCCGACGTCATTCTAGCGCTGCACCGGCGAATCC--TCGCGCGCGCGGTTCCTCTAC
CTAGCTAGTTTAGCTTTCTGCTTCTTCCCTAGTCGTTTGCCTAGCTTCCATTATCTTGTTAATTAATGTGCTATGTCATG
CATGGGTACTTGTATGGTATATTTTT-TCCCTTTTTTGTTTTCATTCCTCTTCCGTCTTTGAAGCTTGGGAATGTAAAAT
TCCTACAGGTATCAAGAACCCAACGAACAATGGTTGCTCGTCAATTAGCTTCTTA--ATTTCCAATGATCAATTGGTTTT
CGCCTCCTAATTTCCAATGATCGATTCTTAGAGCATCTTCAGCCGTTGGCCCCCCAGGGGGCGCCTAAAATCACCGTCTG
GGGTGACCCGGCGAAAAAAATGGGCCTGGGCGAGTTGGCCCCCAGCCGCCGCCCCCAGGGCCGGCCCCAGACGCGGGAAA
AAAAATTGTGTACCAAATTTACGCAAAGTTCGGCTAAAACACGCCAAATTTCGGCAAACTTGGGCTTATATTCGCGGATT
TAAGTCGAGTAGTCGCAATTACATATAAAAACTAATAAAAAAACTAATCGGGAAGATGGAGTGGCTGGGGAGAAGAGATC
GGCGGCGGCGCTCGGGAGATGAAGTGGCTGGGGGAGAACAGATCGGCGGCGGCGCTCGGGAGATGGAGTGGCTGGGGGAG
AAGANNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNGGCGGCGGCGCTCGGGAGAGGGAGGGCTGGGGGAGAAGAGCTCGGCGGCGGCGCTCGGGAGAGGTGGAG
AGGTGGCACTCATCACAGGCGAGCGAGGCCATATATAGCCGCGCCGCGTCCGTGTGTACGCGTCCGATGGAGGGGAGGCG
TCGGCGCGCCGCCCCGTGAACGGCGGCAGCCTTGCCATTGATTCCCCGCGGGAAACCGAGGCGTCGGGAGAAGACGAGGC
GGGCGGTGTCGTTGACGCAGCTGGCCCGCGGCGCTTTCGCGCCAAAAACGATTCGCCCGGTGCCCCCGAGCGCCCCCCAG
CGCGCCAGGTTCGGGTTGGGTCCGCCGGTGCCAATTTCGGCCCGAGCCGGCGATAAAAGGGCCCTTGAGGACGTGACTAG
GCCGATTTTTTGGCGCCGACGGCCAAAAAATCACCTAGGAGGCCTTGTTGGGGGCGCAGCTGGAGATGCTCTTATAATGC
ATTTAACTACTCCAGTTTCGTAAG--------------------------------------------------------
-----------------------AAGAAACAATGATCCAAGCTTCTTAAGCTATGTACGGCCATGCATGCTTCTATGGTT
GCACGCTTGGTTTGGGATATGCAAGCTTCTGGTTACTCTCGTTTTGATTCCTCAATTCAGTGTCTCGGCTTACTTATATG
CAGGCTTCTGGTTACTCTCGTTTTGACTCCTCAATTCAGTGTCTCGGTTTACTTAATTTCGTTCAAAGTATTTTAGAAGG
TCTAGGGCCATAGTTTTATCAAAAACTTGTTACTGTACACGGTCGCGAGATTTGGTGTCGGGTTCTTCAGATCGATTCAA
GGGTTCAACGGCGGCAACTGCGGCTCCGGGGCGCTAGTTCTTAGCGACACTCTCACAAAAACTTCCTTACTGTCATCGAC
AAGGGCGGGCCAGCTTTGATATGGGTGGGAGCGGCCCGTGTGGCTCGTTTTAACACACC-GCTCATTCTGACGGCAACAG
TAGTTGTTTGGTGCGAGCAATGCTAGACCTACTTAATCTTACTTACAGATTTACGTAACAGCCAGCATGAAAGATTGGGA
TTGGATGGAAGGGGAAGGGAGGGGCCCACACCCGTGAAAATCAGTGGGGGCGACAGAAATTTGTTAGGCAGGATACGTAA
CCTTTCGTAACAGACTTCGTACATGTAGGATTATTGGTTTGGTGCTAGGGACCTCGATGTATTCTTTATTATGTTTGAGA
TGCTTTCTACTTTTGGTGGACT---------TAATAGATCTTAGTTCTTTTGGCAAAAGAAATATTTATTATTGTACTTT
GGCTCAATTTCAGTTGATTTGGCAGCCGGAATTCTGCTGTTTTTCAAACTCAAGCTGTTAAAATTTTACTGACTCCATTC
ACAAGTATGTCGTCCTACAAAGCGTATTGTCAGACT
>SNPs
SSS--------------------------------------------------------S-----------------S--
--------------S---------S-------------------------------------------------------
--------------------S---------------S-------------------------------------------
-SSSSSS------------S--S--S--------------S--S------------------------------------
-------------------------------------------------S-----------------------------S
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--------------------------------------------------------------S-SSS-------------
-----------------------------------------------S--S-----------------------------
---------S-------S---------------------------S--------S-------------------------
------------------------S----------------S---------------------------------SSS--
-----------------------------------------------------S-------------S------------
--------------------------SS----------------------SSSS---------------S----------
-------------------------S------------------------------------------------------
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---------------------S----------------------------------------------------------
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--S-----------------------------------------------------------------------------
------------------------------------------------------S-------------------------
-------------------------------------------------------S------------------------
--------------------S--------S--------------------------------------------------
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-------------------------------------S-----------------S------S-----------------
-------------------------------------------------------S------------------------
------------------------S-------------------------------------------------------
--------------------------S-----------------------------------------------------
---------------S----------------------------------------------------------------
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-----------SS-------------------------------------------------------------------
--------S--S-------S------------------------------S-----------------------------
-----------------------S----------------SS-S-SSS--SSSS--------------------------
--------------------------S--------S------------------------SS-S----------------
-----S-------------S----SS-SS-SS---S----S--S----------S-S---------------SS------
---------SS----S----------SS-------S--------S-S---SS---SS--S--------------S--S--
------S---------S------------------SSSS-S---SSSSSSSSSS-SSS-S----S---------------
--------------SS-SS-SSS--SSSSS-S------------------------------------------------
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-----------SS-SS-SSSS-SSSSSSSSS--S-----S------------------S---SS----------------
--------------------S------------------------------------------------------S--S-
--------------------------------S---
>forward_868
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------------------------------------------------CCACTCGCTAGCAACCAGAA------------
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>reverse_3716
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-----------------------------------GGTTCTTAGGGGCACGTTCA-------------------------
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