>input_sequence_69291
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
------------------------------------------------------------------ATGGCCTTTCTTCT
TCTGCTCATGGCCGCGAGCCTCGCTGCCAGCGCGACGGCTGCCATGGAGGCGGAGCCGGCGTGCTCGCCCTCCCTGTGCG
GAGCCGTCCAAGTCCGGTATCCGTTCTGGCTGGACGGCGGCGGCGGCGGCAACGTTTGCGGGTACCCGAGCCTCAGGCTC
GAGTGCCGCGGCGGCACGCCCGTGCTCCGGCTGCCCTCAGGCGACTACAGGGTACACCGAATCAGCTACGGCGACAACGG
CGACGACGGCACATTCACTCTGCACGATTCCATCGTCCACAACAGCAGATGCCCGCTCGTCGTCGGAAGGAATCTGACTT
TGCCCGAGGGCTCGCCGCCGCCGTTCTCCCTCACCGGCAACGACATGAACGTGACGTTCTACCTCAGATGCCCCTTCAAC
GCATCTCCTTCGCACATGGTGGCTTGCCTGGAGGAGGCCGATGGCGTGCACCATACGTACGCATTCAAGGACGGCGACTA
CCTTCTTCCGTACGAGTTCAACAGCCTCTGCCAGGACGTCGTGGGGATGCCGGTGCTCAGGTCGTCGCTGGGGGGCAGCA
GGTGGATCCACCGCGTTTTCCGGGCTCTGCGGAGAGGCTTCGAACTGAGGTGGACGCGGGCGCTGGAAGGGAGGTGCAGA
GACTGCGAGAACTCCGGTGGCCTCTGCGGCCACCTTGGCGACGCGCCGTACCAGTTCACATGCTTTACGGCGCCTGCTGC
CCCTGCCCCTGCCCCTGCACTGCCACTGAGCCTTTGA-------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--
>chr2D_1_TraesCS2D01G513200
GGCGCGCGCTCCCATGGGCTCGGTCAGGGCGCGAGCACGGGCTCAGCCAGGGCGCTTCACCACGGCCAGCGCGCGAGCAC
GAACGCAGCAAGAACACAAGCACACAGCTCTGCTCGCAGTGCGCCGGAGATAGAAAATCGACGCGGCGAGGCGTGAGGGA
GGGCGGCGAGCGCAGATGGCCGCGATGCACCATATTCGGCCGGCGCCAAGAAGCGGGGAGGCGTGCGGGGAGGGGCGATG
CCAGGCGGCGGGGAGGGGTGGTGCCAGGCGGCGTGAGCTCGCGTGCCCCTGCCCGTTCCCGTGCGTCTTGCCCGGATTCA
GGCGGGATCCGGCTAGGGGCGGCGCTGTACAGAGGGAGCGCTGCGGCGCTGTGAGGGAGGGGCGGCGCTGTGAGGAAGGG
GCAGCGCTGCGGCGCTGTGAGGGAGGGGCGGCGCTGTGAGGAAGGGGCAGCGCTGCGGCGCTGTGAGGGAGGGGCGGCGC
TGCGGCGAGCAGAAGACGAAAGAGGAGGTTCTTGGATCTGTACAGGGGATTGTCACCTTGGTGAGAGAGGAGGCAAAGGG
GAGATCTGGTCCGGGGAAGGCGGAGGACGACGACCCCGGTCCGTCGCCGCCAGAGGTACGGAGCGCTGGACGGAGGAGGG
CGGAGCGCTGGATCTTGGTCCCCGTCGCCTCTCGTTCGCGAGAGCGAGCGAGCGGCCTCTCGAGGCGTGCAAGCCGCTCC
CGGGGATGGCGGAGATGGCGATGCCCTCGGGGCCCGCCACGAGGCCGAGCGCCGCAAACTTACCGTGCACCGGCAGCTCC
TCCCTCGGCCTGAGAGGCAGAGACGAAGACGAAACTCAGTTGGAAGTTGGAACCGCTCCCCGTGGAAATCGGCGGAAATC
CGCCGCTCACGATTTGCGTGAGCTCCAGCAATCCGCCG------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
----------------------------------------------------------------TTAAATAAAGGAGCCA
CACTGCATCTTCTTCGTCCCGTACCTCTGCAGTAGCACTACACCTCGCACCTGCAAGGCTGCAACAATGGCCTTTCTTCT
TCTGCTCATGGCCGCGAGCCTCGCTGCCAGCGCGACGGCTGCCATGGAGGCGGAGCCGGCGTGCTCGCCCTCCCTGTGCG
GAGCCGTCCAAGTCCGGTATCCGTTCTGGCTGGACGGCGGCGGCGGCGGCAACGTTTGCGGGTACCCGAGCCTCAGGCTC
GAGTGCCGCGGCGGCACGCCCGTGCTCCGGCTGCCCTCAGGCGACTACAGGGTACACCGAATCAGCTACGGCGACAACGG
CGACGACGGCACATTCACTCTGCACGATTCCATCGTCCACAACAGCAGATGCCCGCTCGTCGTCGGAAGGAATCTGACTT
TGCCCGAGGGCTCGCCGCCGCCGTTCTCCCTCACCGGCAACGACATGAACGTGACGTTCTACCTCAGATGCCCCTTCAAC
GCATCTCCTTCGCACATGGTGGCTTGCCTGGAGGAGGCCGATGGCGTGCACCATACGTACGCATTCAAGGACGGCGACTA
CCTTCTTCCGTACGAGTTCAACAGCCTCTGCCAGGACGTCGTGGGGATGCCGGTGCTCAGGTCGTCGCTGGGGGGCAGCA
GGTGGATCCACCGCGTTTTCCGGGCTCTGCGGAGAGGCTTCGAACTGAGGTGGACGCGGGCGCTGGAAGGGAGGTGCAGA
GACTGCGAGAACTCCGGTGGCCTCTGCGGCCACCTTGGCGACGCGCCGTACCAGTTCACATGCTTTACGGCGCCTGCTGC
CCCTGCCCCTGCCCCTGCACTGCCACTGAGCCTTTGAGCAATGAGCGTCAGAGAGACCTATGCGTCGCGCTAGTTCTTAA
TTTACACCATCATATACTCGCTCCGTATGAGCTACGATACTTGATTCGCTATAGTTTCTCACAAGTCACAATATATAAGT
TGACTGAATTTGTAATTTTCTAATTTGGGTAAGTCAAGTCTGCGTGAGGAGGAACGGTTGGAGAAGGAAGAAAGCTAGAG
GTAGAAGAAAGAAGGTTGGCCGTTGGATCATCGATCTAACGGCCCAAAAAATTGGCTTACCTATAATATATTTTCAGGCT
TGCTTACATACAGCCGACAGCCGTTGCCGTGAAAAATCTCGCTCCCGCCGGCGCAAATCATCACCGATCC----AGCGCC
TTTTCGAACCGCCGCCCAGCGGAAGCCTTGCAAACTCCGGAAGAGAACTCCGCAAGCACCAGGCCTGTGCAGTAGCAGTC
CCCATGGCTGTCTGGCACTCTGGCTGCCCGCCGCCTCCAGCCCAAGTTGGCAACCGTGTCCAGATCCAACTTGATAACAA
GAAGAGGCTGCAACTTTGAGTTGGGCACATGTGCTGCTCGATGCTTTTGGTCACCGCAGCACGAATGCACGGAAGCAGGC
GGTTGATTGGTTTTTGGGGGACGAAGCTGTGTCGAACCAGTTGGTGTTGCACTTCCGGACGGTGAGCAGGGTGTCGCAGC
CGCCGCACTGGAACGCCACCGCCCCATCATGTATCCAATTGCATCGTAG-CCCGTAGGGAGTAGCTCGGGCGCGCGTTCA
TGTTGGACGACCCGCGCGCGGTGCTCTCACGAGCTGGGCGCCGGGCTTGGCGAGGAGCAGCCGGGCCCGGGCGCGCCGGT
GGGAAACATCGGGATTCAGGCGGAGTCTGTCTTCCCGCAGCGACGGCGTCCACCTTGCGCCTCACGGACCTCGGCCTGTG
CACCATGACCTCAGCCAGCGACGGTGTCGGGCGGCTGCGCCGGTCGCCGGTCCTGAGCTGGGAGCTTGTGGCAGGCAGTC
CC
>chr2A_4
---GCGCGCTCCCATGGGCTCGGTCAGGGCGCGAGCACGGGTTCAGCCAGGGCGCTTCACCACGCCCAGCGCGCGAGCAC
GAACGCAGCAAGAACACAAGCACACAGCTCTGTTCGCAGTGCGCCGGAGATAGAAAGTCGACGCGGGGAGGCGTGAGGGA
GGGCGGCGAGCGCAGATGGCCGCGATGCACCATATTCGGCCGGCGCCAAGAAGCGGGGAG------------GGGCGATG
CCAGGCGGCGGGGAGGGGTGGTGCCAGGCGGCGTGAGCTCGCGTGCCCCTGCCCGTTCCCGTGCGTCTTGCCAGGATTCA
-------------------------------------------------------------------------------G
GCGGCGCTGCGGCGCTGTGAGGGAGGGG----------------------------------------------CGGCGC
TGCGGCGAGCAGAAGACGAAAGAGGAGGTTCTTGTATCTGTACAGGGGCTTGTCACCTTGGTGAGAGAGGAGGCGAAGGG
GAGATCTGGTCAGGGGAAGGCGGAGGACGACGACCCCGGTCCGTCGCCGCCAGAGGTACGGAGCGCTGGACGGAGGAGGG
CGGAGCGCTGGATCTTGGTCCCCGTCGCCTCTCGTTC----------GCGAGCGGCCTCTCGAGGCGTGGAAGCCGCTCC
CGGGGATGGCGGAGATGGCGATGCCCTCGGGGCCCGCCACGAGGCCGAGCGCCGCAAACTTACCGTGCACCGGCAGCTCC
TCCCTCGGCCTGAGAGGCAGAGACGAAGACGAAACTCAGTTGGAAGTTGGAACCGCTCCCCGGTGAAATCGGCGGAAATC
CGCCACTCACGATTCGCGTGAGCTCCAGCACATTAAATAAAGAGTGAATTCCATTTTTTACCTTTAGTTGTACATTTGTG
ACACATATTACCCTATTTAGCGAAACTTTTATCGAAATGTCAGATTTTGGAGACTTTAACACGGTTTTACCCCAGTTTTA
CATTTTGTCTGTTTATGGTCGATAGGATCGGCATGTTGCGTCATTGATTTGTAAAAAAAAACTGTAAGGATCGGAGGGCA
TCATTGGCGATCTTGTCCAAGCTTCTCTTGTCTATCTGTTCCACTCCTTGTGGCCGTCCACATGTTTTTGAATACAGGGC
GTCACCTCACACCTTACCTGATGGACACGCATCAAAAAACAAGGGTCCAAAAATTTCAAAAGGGGTATTCTAGACGAATT
TTCACTCGAAGGGGTAATTAGTGTCACAAATGTATAAATATGGGGTAAAAAGTGGAATTCACTCTTAAATAAACGAGCCA
CACTGTATCTTCTTCGTCCCGTACCTCTGCAGTAGTACTACACCTCGCACCTGCAA--------CAATGGCCTTTCTTGT
GCTGCTCATCGTCGCGAGCTTCGCTGCCAGCGCGACGGCGGCCCTGGAGGCGGAGCCGGCGTGCTCGCCCTCCCTCTGCG
GCGCCGTCGAGGTCCGGTACCCGTTTTGGCTGGACGGCGGCGGCGGCGGCAACGTTTGCGGGTACCCAAGCCTCAGGCTT
GAGTGCCGCGGCGGCACGCCCGTGCTCCGGCTGCCCTCAGGCGACTACAGGGTACACCGAATCAGCTACGGCGACAACGG
CGACGACGGCACATTCACTCTGCACGATTCCATCGTCCACAACAGCAGATGCCCGCTCGTCGTCGGAAGGAATCTGACTT
TGCCCGAGGGCTCGCCGCCGCCGTTCTCCCTCACCGGCAACGACATGAACGTGACATTCTACCTCAGATGCCCCTTCAAC
GCATCTCCTTCGCACATGGTGGCTTGCCTGGAGGAGGCCGATGGCGTGCACCACACGCACGC------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--
>chr2A_1472
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
---------------------------------------------------------TACGCGTTCCGGGACGGTGACTA
CCTTCTTCCGTACGAGTTCAACAGCCTCTGCCAGGACGTCGTGGGGATGCCGGTGCTCAGGTCGTCGCTGGGGGGAAGCA
GGTGGATCTACCGCGTTTTCCGGGCTCTGTGGAGAGGCTTCGAACTGAGGTGGACGCGGGCGCTGGAAGGGAGGTGCAGA
GACTGCGAGAACTCCGGTGGCCTCTGCGGCCACCTTGGCGAGGCGCCGGACCAGTTCACATGCTTTACGGCGCCTGCTGC
CCCTGCCCC------TGCACTGCTACTGAGCCTTTGAGCAATGAGCGTCGGAGAGACATATGCGTCGCGCTAGTTCTTAA
TTTACACCATCATATACTCACTCCGTATGAGCTACGATACTTGATTCGGTATAGTTTCTCACAAGTCACAATATATAAGT
TGACTGAATTTGTAATTTTCTAATTTGGGTAAGT-AAGTCTGTGTGAGGAGGAACGGTTGGAGAGGGAAGAAAGCTAGAG
GTAGAAGAAAGAAGGTTGGCCGTTGGATCTTTAATCTAACGGCCGAGAAAATTGGCTTACCTATAATATATTTTCAAGCT
TGCTTACATACAGCCGTTGT-------CGTGAAAAATCTCGCCCCCGCCGGCGCAAATCATCACCGATCTACCTAGCGCC
TTTTCGAACCGCCGCCCAGCGGAAGCCTTGCAAACTCCGGAAGAGAACTCCGCAAGCACCAGGCCTCTGCAGTAGCAGTC
CCCATGGCTGTCTGGCACTCTGGCTGCCCGCCGCCTCCAGCCCAAGTTGGCAACCGTGTCCAGATCCAACTTGATAACAA
GAAGAGGCTGCAACTTTGAGTTGGGCACATGTGCTGCTCGACGCTTTTGGTCACCGCAGCACGAATGCACGGAAGCAGGC
GGTTGATTGGTTTTTGGGGGACGAAGCTGTGTCAAACCAGTTGGTGTTGCACTTCCGGACGGTGAGCAGGGTGTCGCAGC
CGCCGCACTGGAACGCCACCGCCCCATCATGTATCCAATTGCATCGTAGCCCCGTAGGAAGTAGCTCGGGCGCGCGTTCA
TGTTGGACGATCCGCGCGCGGTGCTCTCACGAGCTGGGCGCCGGGCTTGGCGAGGAGCAGCCGGGCCCGGGCGCGCCGGT
GGGAAACATCGGGATTCAGGCGGAGGCTGTCTTCCCGCAGCGACGGCGTCCACCTTGCGCCTCACGGACCTCGGCCTTTG
TGCCATGACCTCAGCAAGCGACGGTGTCGGGCGGCTGCGCCGGTCGCCGGTCCTGAGCCGGGAGCTTGTGGCAGGCAGTC
--
>SNPs
SSS--------------------------------------S----------------------S---------------
--------------------------------S-----------------------S---------S-------------
------------------------------------------------------------SSSSSSSSSSSS--------
------------------------------------------------------------------------S-------
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS-
--S-------------------------SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS------
----------------------------------S-------------S-------------------------S-----
-----------S--------------------------------------------------------------------
-------------------------------------SSSSSSSSSS----------------------S----------
--------------------------------------------------------------------------------
--------------------------------------------------------------SS----------------
----S---------S---------------SSSSSSSS------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
-------------------------------------------------------------------------S------
-----S-----------------------------S--------------------SSSSSSSS--------------S-
S--------S-S-------S-------------------S---S-------------------------------S----
-S------S-S--------S-----S-----------------------------------------S-----------S
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
-------------------------------------------------------S------------------------
-----------------------------------------------------S--------S---SS------S-----
---------------------------------------------------------------------------S----
--------S--------------------S--------------------------------------------------
-----------------------------------------S------S-------------------------------
---------SSSSSS--------S-------------------------S-------S----------------------
-------------------S----------------------------S-------------------------------
----------------------------------S-------S---------------------S---------------
-----------------------------S-SS-----------S-S-----------------------------S---
----------------SSSSSSSSSSS---------------S--------------------------S----------
------------------------------------------------------------------S-------------
--------------------------------------------------------------------------------
-----------------------------------------S--------------------------------------
---------------------------------S----------------------------------------------
----------------------------------------------------------S---------------------
----------S---------------------------------------------------------------------
-------------------------S---------------------------------------------------S--
SS-------------S------------------------------------------S---------------------
SS
>forward_572
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
------------------------------------------------------------------------GCAAAGGG
GAGATCTGGTCC--------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--
>reverse_2506
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
-------------------------GCCGTGAAAAATCTCGCTCC-----------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--
