>input_sequence_69289
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-----------------ATGGGCAGCGCCGCCTCGCCGCCGCGGGCCCTCGACGCGGCGACGCAGGAGGACCTCAAGCGC
GTCTCCGCGCACCGCGCCGTCGACATGGTGGAGTCCGGCATGACGCTGGGGCTCGGCACCGGCTCCACGGCCGCGCACGC
GCTCGACCGCCTCGGCGACCTCCTCCGCACCGGCGCGCTGCGCGCGGTCGCCGGGGTGCCCACCTCCCTCAAGACGGAGG
CGCACGCCGCGCGCGTCGGGATCCCCATGCTCGCGCTCGCCGACGCCGCCGAGATCCACCTCTCCATCGACGGCGCCGAC
GAGGTCGACCCGGACCTCAACCTCGTCAAGGGCCGCGGCGGCTCGCTCCTCCGCGAGAAGATGATCGAGGGCGCCGGCGC
CCGCTTCGTCGTCATCGTCGACGAGTCCAAGCTCGTCCCCCGCCTCGGCTGCACGGGCGCCGTGCCCGTCGAGGTCGTCC
CCTTCGGCAGCGCCTACACGCTCGGCCTCATCCGCAAGGTGTTCGACAAATTGCCGGGCTTCCACGCCAGGCTCAGGACC
GTCAAGTCCAAGGCCAGCGACCGCCAGGAGGAGCTCTTTCTCACCGACAACGGCAACCACATCGTCGAGATGTTCTTCGA
GGACGGCATACACGGCAACCTGCGCGACATCAGCGACAGCCTGCTGCGCATCACGGGCGTCGTCGAGCACGGCATGTTCC
TCGGCATGGCCACCAAGGTGATTGTCGCCAAGAAGGACGGCACCGTGGCGGTCCTCAGCAAGAAG------TAG------
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>chr2D_1_TraesCS2D01G271700
TATTTCTATGAACATCTCCGAGAGACCGAGGTGAAATATCATCTTAAGATTAACGAAGTTATCACAGCCGCTTCGTACCT
TCCACCAAAGGAAATCAACAAAAAGACTAAAATCAATTCAAAAAAATACGAGCATTATTGCAAAGGTTAGTACTTGAACC
CCGGTGAGCTAGTTCCAGTAGAAGGAAGCCAAATGGCCATTTGAGATACG-CTGAATTCACTATTTGTAGGCTTTCATTG
GGTTTGAGAAGTCAGGAAGTGTACAAGGACTACCTTGAAACAAAACCATGTCAATTATTTTTGAACTTATGGAATTGTAT
TTTACAGGATTACACATTGTTTCCTTAACTAAACTGAATAAATGACTTTGGCAT--------------------------
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---------------------------------------------------------GTAACTGTTGGACATGGCACTAT
AAAACTGAAATTCAAGTTCCTCAAAGTTACTGAACCACACGTTATAAAAAGAAGAGTTACTGAACCACAATTTATTCATA
TCTGACACAGTCTCGCCGTGGCAGCGGTAGAAAGCTT------------------------------GCCTTGTTAAAAG
CGAACGGTACGGAGCTGGATCCCTCT---GAAGATAGGCCTATCAGCAACCGAAATTGTTAATAAATCAAGCATGAAGCA
CGCCGTTTCCTTCCGTTTCTTGCCCCAGCAACGTGAATCATGGCACTGCAGCAGTGCAAGCAACGGAGAGAAGTGCTGTA
CGTAGCGTAGAGAGGACACCAAGTAGAATTTCCGTTCCGTTTTACAACGCGTGCAGAACCCCCGAAT-AAAGACCGCGTC
AGGTCAGAGAGAGAAACACGCCCTGATTCGCCGCACCTTTCACGCATTCCGATGCCCATAAATGCTGCCGATTCTGTGCC
ATCTCCCCCCACACG------CTCCACCTCCACTTCCCATTTCCCGCCGCCTCCTTTCCTAAAAATCTACACAAAGATTC
GTAGCAAAACT---CCCAAATCCCCCACCTCCCGTTTC----------CCCACCCCAATCCCCTCCAAGAAACCCTCGCC
CCCCTCGCCTCGCCGCCATGGGCAGCGCCGCCTCGCCGCCGCGGGCCCTCGACGCGGCGACGCAGGAGGACCTCAAGCGC
GTCTCCGCGCACCGCGCCGTCGACATGGTGGAGTCCGGCATGACGCTGGGGCTCGGCACCGGCTCCACGGCCGCGCACGC
GCTCGACCGCCTCGGCGACCTCCTCCGCACCGGCGCGCTGCGCGCGGTCGCCGGGGTGCCCACCTCCCTCAAGACGGAGG
CGCACGCCGCGCGCGTCGGGATCCCCATGCTCGCGCTCGCCGACGCCGCCGAGATCCACCTCTCCATCGACGGCGCCGAC
GAGGTCGACCCGGACCTCAACCTCGTCAAGGGCCGCGGCGGCTCGCTCCTCCGCGAGAAGATGATCGAGGGCGCCGGCGC
CCGCTTCGTCGTCATCGTCGACGAGTCCAAGCTCGTCCCCCGCCTCGGCTGCACGGGCGCCGTGCCCGTCGAGGTCGTCC
CCTTCGGCAGCGCCTACACGCTCGGCCTCATCCGCAAGGTGTTCGACAAATTGCCGGGCTTCCACGCCAGGCTCAGGACC
GTCAAGTCCAAGGCCAGCGACCGCCAGGAGGAGCTCTTTCTCACCGACAACGGCAACCACATCGTCGAGATGTTCTTCGA
GGACGGCATACACGGCAACCTGCGCGACATCAGCGACAGCCTGCTGCGCATCACGGGCGTCGTCGAGCACGGCATGTTCC
TCGGCATGGCCACCAAGGTGATTGTCGCCAAGAAGGACGGCACCGTGGCGGTCCTCAGCAAGAAG------TAGCCGCCT
GGGGAAGAGTCTGCAGAGGAGATGACAATAAGCCAAGATTGAAGCTGTTCTTGCTCCTGCGGTGAACTTGCTCTACGTTA
CTGTTACAGCGTTTCCTCCTATTCATGGGTAATGCGATGGTGCCCAGCTTAATGTGGTGAAGCTAATAAATTTTGGACTT
CGCTCCAT--AATGTTATCAAGTCAGTTTTGTTCATTGCTCGCCTCCCAATTTTGACTCCTTGTTTAGGCATATATACTT
---TGGCTTACATCAGCTGTCCGTTCCCTCCCGATTCAGTGAT-AGTAGCCATGTGCCTGTGTTTTGTGTTCACCAATCC
ATGACATGAAATGGATTGGCTACGGTCCAGTAGGGTCCAAATCAGTA-------GTCTCAACTAGGCATGGATAGAATGT
GCATGCCAGTTTTC--TTTTTTAAGTTTAATGGTCCGATTCAGTGCACCGGATTTCTAGACATCCGTTTGTATGGAGACA
CTTTCTTTT-GCCACTTTTTTCTTCCTTTCTCCCATCCAAATGCGCCACTCTTTTTGGCACTTATTTGCATGGACAATAG
TGTTTCGCTTTTAACACAAGCAGAGAAAAAAGAAACCTAGTGCAAACAAAGCACCTCTAAGAACATCTCGAGAATGTACT
GTAAAAACTAGTGGAGATTTAGGCCTCCACGAATTAGATAGGGTTGGTGCTAGATTTACCTGGACCAACCGCCAGGCGGA
CCCGACTCGCTCCGTCCTGGACTGCGTCATGGTCTCCCCGGAATGGGAGCTGCGATGCCCTCTAGCGTCGCTTCGCGCGA
TCACCCGAATCAGTTCTGACCATGTGCCCCTGCTTCTCTCTTCTGAGAACGACCGTCCTCCTCAACCTCCTCGTTTCTGG
TTTGAGGAATTCTGGCTCAACTAGCTCGGTTTCGTCGAGGCCGTTAGCG-CCGGTGGGTTGAGGCCCGCGCCGCCGCCCC
TCGCCCCTTCTCGGCGATTAACACCATCCAATTTTGCGCTAAATGCGCCCG
>chr2A_1
TATTTCTATGAACATCTTTGAAAGACTGAGCTGATATAACATCTTAAGACTAACGAAGTCATCACAGCCACCTCATACCT
TCCACCGAAGGAAATCACCAAAAAGACTAAAAAAGATCGCAAAAATG-----------TGCCAAATTTAGTATTTGAACC
CTGATGAGCTAGTTCCAGTAGAAGGAAGCCAA----CCATTTTGAAATACACTGAATTCACTATTTGTAGGCTTTCATTG
GGTTTGAGAAGTCAGGAGGTGTACAAGGACTAACTTGAAACAAAACCATGTCAGTTATTTTTGAACGGATGTAATTGTAT
TTTACTGAATTGCACTTTGTTTCCTTAACTACATTGAATAAATAAATTTGTGAG--------------------------
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---------------------------------------------------------GTAAGTGTTGGACATGGCACCAT
AAAACTGAAACTTGAGTTACTCAAAGTTACTGAACCACACGTTATGAAAAGAACAGTTACTGAACCACATTTTATTCATA
TCTGACACAGTCTCGCTGTGGCAGCGGTAGAAAGTTT------------------------------GCCGTGTTAAAAG
CGAACGGTACGGAGCTGCATCCCTCTGGCGAAGATAGGCCTATCAGCAACCGAAATTGTTAATAAATCAAGCATGAAGCA
CGCCGTTTCCTTCCGTTTCTTGCCCCAGCAACGTGAATCATGGCACTGCAGTGCA--AAGCAACGGAGAGAAGTGCGGTA
CGTAGCGTAGAGGAGAG-----------TTTCCGTTCCGTTTTACAACGCGTGCAGAACCCCCGAATTAAAGACCGCGTC
AGGTCAGAGAGAGAGACACGCCCTGATTCGCCGCACCTTTCACGCATTCCGATGCCCATAAATGCTGCCGATTCTGTGCC
ATCTCCCCACACACGCTCCGCCTCCACCTCCGCTTCCCATTTCCCGCCGCCTCCTTTCCTAAAAATCTACACAAAGATTC
GTAGGAAAATCCTGCCCAAATCCCCCACCTCCCGTTTCTGCTCCCGTTCCCACCCCAATCCCCTCCAAGAAACCCTCGCC
CCCCTCGCCTCGCCGCCATGGGCAGCGCCGCCTCGCCGCCGCGGGCCCTCGACGCGGCGACGCAGGAGGACCTCAAGCGC
GTCTCCGCGCACCGCGCCGTCGACATGGTGGAGTCCGGCATGACGCTGGGGCTCGGCACCGGCTCCACGGCCGCGCACGC
GCTCGACCGCCTCGGGGCCCTCCTCCGCACCGGCGCGCTGCGCGCGGTCGCCGGGGTGCCCACCTCCCTCAAGACGGAGG
CGCACGCCGCGCGCGTCGGGATCCCCATGCTCGCGCTCGCCGACGCCGCCGAGATCCACCTCTCCATCGACGGCGCCGAC
GAGGTCGACCCGGACCTCAACCTCGTCAAGGGCCGCGGCGGCTCGCTCCTCCGCGAGAAGATGATCGAGGGCGCCGGCGC
CCGCTTCGTCGTCATCGTCGACGAGTCCAAGCTCGTCCCCCGCCTCGGCTGCACGGGCTCCGTGCCCGTCGAGGTCGTCC
CCTTCGGCAGCGCCTACACGCTCGGCCTCATCCGCAAGGTGTTCGACAAATTGCCGGGCTTCCACGCCAGGCTCAGGACC
GTCAAGTCCAAGGCCGGCGACGGCCAGGAGGAGCTCTTTCTCACCGACAACGGCAACCACATCGTCGAGATGTTCTTCGA
GGACGGCATACACGGCAACCTGCGCGACATAAGCGACAGCCTGCTGCGCATCACGGGCGTCGTCGAGCACGGCATGTTCC
TCGGCATGGCCACCAAGGTGATCGTCGCCAAGAAGGACGGCACCGTGGCGGTCCTCAGCAAGAA-GTAGCCTGGCCGCCT
GGGGAAGAGTCTGCAGAGGAGATGACAATAAGCCCAGATTCAAGCTGTTCTTGCTCCTGCGGTGAACTTGCTCTACGTTA
CTGTTACAGCGTTTTCTCCTATTCATGGGTAATGCGATGGTGCCCAGCTTAATGTGGTGAAGCTAATAAATTTTGGACTT
CGCTCCAT--AATGTTATCAAGTCAGTTTTGTTCATTGCTCGCCTCCCAATTTTGACTCCTTGTTTAGGCCTGATAGATA
CTCTGGCTTACATCAGCTGTCCGTTCCCTCCCGATTCAGTGGCAAGTAGCCATGTGCCTGTGTTTTGTGTTCACCAATCC
ATGACAGGAACTGGATTGGCTACGGTCCAGTAGGGTCCAAATCAGTA-------GTCTCAACTAGGCATGGATAGAATGT
GCGTGGCAGTTTTT--TTTAA-AAGTTTAATGGTCCGATTCAATGCACCGGATTTCTAGATATCCGTTTGTATGGAGACA
CTT-CTTTT-GCCACTTTTTTCTTCCTTTCTGCCATCCAAATGGGCCACTCTTTTCGGCACTTATTTGCATGGACAATAG
TGTTTCACTTTTAAC------------------------------ACAAAGCACCTCTAAGAACATCTCCAGAATGTACC
GTAAAAACCAGTGAAGATTTAGGCCTCTGTGAATTAGATAGGGTTGGTGCCAGATTTACCTAGACCAACCGTCAGGCGGA
CCCGACTCGCTCCGACC------GCGTCATGGTCTCCCCGGAATGGGAGCTGCGATGCCCTCTGGCGTCGCTTCGCATGA
TTACCTGGATTGTTTATGACCATGTGCCCTTGCTCCTCTCTTCTGAGAATGACCGTCCTCATCAACCTCA---TTTCCGG
TTTGAGGAATTCTGGCTCAACCAGCCCGGTTTTGTTGAGGTCGTCAGCACCCGATGGGCTGAGGCCCGTGCCGCCGCCTC
ACGCCCCTTCTCGGTGATTGACACCATCCACTTTTGTGCTAAACGCGC---
>chr2B_1
TATTTTTATGAATATCTTGAAGAGACTGAGCTGATATAATATCTTAAGATTAATGGAGTCATCACAGCCGTTTCGTACCT
TCCACCGAAGGAAATCGCCAAAAAGACTAAAATAATTGAC--AAAATATGAGCACTGATGTCAAGTTTAGTACTTGAATC
TTGATGAACTAGTTCCAGTAGAAGGAACGCAA----CCATTTGAGATATG-CTCTATTCACTATTTGTAGGCTTTCATTG
GGTTTGAGAAGTCAGGAAGTGTACAAGGACTACCTTGAAACAAAACCATGTCAGTTATTTTCGAACGGATGGAATTGTAT
TTTACAGGATTACACTTTGTTTCCTTCACTAAACTGAATAAATGACTTTGGCATGTACTCCCTCCGTTCCTAAATATAAG
TCTTTCTAGAGATTCCAACAAATAACTACATACGAAGCAAAATGAGTGAATCTATCCTCTAAAATTTATCTACATACATC
CGTATGTTGTAGTTCATTTGAAATGTCTAAAAAGACTTACATTTAGGAACGGAGGGAGTAACTGTTGGACATGGCACTAT
AAAACTGAAATTCAAGTTCCTCAAAGTTACTGAACCACACGTTATAAAAAGAAGAGTTACTGAACCACAATTTATTCATA
TCTGACACTGTCTCGCTGTGGCAGTGGTAGAAAGTTTGCCGTGTTAATTTCAAGAAAAAGAAAGTTTGCCGTGTTAAAAG
CGAACGGTACGGAGCTGCATCTCTCTG---AAGATAGGCCTATCAGCAACCGAAATTGTTAATAAATCAAGCATGAACCA
CACCGTTTCCTTCCGTTTCTTGCCCCAGCAACGTGAATCATGGCACCGCAGTGCA--A-GCAACGGAGCAAAGTGCGGTA
CGTAACGTAGAGCCGTAG----GTAGAATTTCCGTTCCGTTTTACAACGCGTGCAGAACCCCCGAAT-AAAGACCGCGTC
AGGTCAGAGAGA----CACGCCCTGATTCGCCGCACCTTTCACGCATTCCGATGCCCATAAATGCTGCCGATTCTGTGCC
ATCTCCCCCCACACGC------TCCACCTCCGCTTCCCATTTCCCGCCGCCTCCTTTCCTAAAAATCTACACAAAGATTC
GTAGCAAAATCCTCCCCAAATCCCCCACCTCCCGTTTCTGTTCCCATTCCCACCCCAATCCCCTCCAAGAAACCCTCGCC
CCCCTCGCCTCGCCGCCATGGGCAGCGCCGCCTCGCCGCCGCGGGCCCTCGACGCGGCGACGCAGGAGGACCTCAAGCGC
GTCTCCGCGCACCGCGCCGTCGACATGGTGGAGTCCGGCATGACGCTGGGGCTCGGCACCGGCTCCACGGCCGCGCACGC
GCTCGACCGCCTCGGGGACCTCCTCCGCACCGGCGCGCTGCGCGCGGTCGCCGGGGTGCCCACCTCCCTCAAGACGGAGG
CGCACGCCGCGCGCGTCGGGATCCCCATGCTCGCGCTCGCAGACGCCGCGGAGATCCACCTCTCCATCGACGGCGCCGAC
GAGGTCGACCCGGACCTCAACCTCGTCAAGGGCCGCGGCGGCTCGCTCCTCCGCGAGAAGATGATCGAGGGCGCCGGCGC
CCGCTTCGTCGTCATCGTCGACGAGTCCAAGCTCGTCCCCCGCCTCGGCTGCACGGGCGCCGTTCCCGTCGAGGTCGTCC
CCTTCGGCAGCGCCTACACGCTCGGCCTCATCCGCAAGGTGTTCGACAAATTGCCGGGCTTCCACGCCAGGCTCAGGACC
GTCAAGTCCAAGGCCGGCGACGGCCAGGAGGAGCTCTTTCTCACCGACAACGGCAACCATATCGTCGAGATGTTCTTCGA
GGACGGCATACACGGCAACCTGCGCGACATCAGCGACAGCCTGCTGCGCATCACGGGCGTCGTCGAGCACGGCATGTTCC
TCGGCATGGCCACCAAGGTGATTGTCGCCAAGAAGGACGGCACCGTGGCGGTCCTCAGCAAGAAGGTAGCCTAGCCGCCT
GGGGAAGAGTCTGCAGAGGAGATGACAATAAGCCAAGATTGAAGCTCTTCTTGCTCCTGCGGTGAACTTGCTCTACGTTA
CTGTTACAGCGTTTCCTCCTATTCATGGGTAATGCGATGGTGCCCAGATTAATGTGGTGAAGCTAATAAGTTTTGGACTT
CGCTCCATAAAATGTTATCAAGTCAGTTTTGTTCATTGCTCGTCTCCCAATTTTGACTCCTTGTTTAGCT----------
----------------------------------------------------------TGTGTTTTGTGTTCACCAATCC
ATGACAGGAAATGCATTGGCTACGGTCCAGTAGGGTCCAAATCAATGCACCGGTGTCTCAACTAGGCATGGATAGAATGT
GCATGGCAGTTTTTTTTTTAA-AGTTTTAATGGTCCGATTCAATGCACCGGATTT-TAGATATCCGTCTGTATGGAGACA
CTT-CCTTTTGCCCCTTTTTTCTTCGTTTCTCCCATCCAAATGCGCCACTCTTTTCGGCATTTATTCGCATGGACAATAG
TGTTTCGCTTTTAACACAAGCAGAGAAAAAAGAAACTTAGTGCAAACAAAGCACCTCCAAGAACATCTTGAGAA------
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>SNPs
-----------------SS-------S---S---S---S--------------------S--------------------
------S----------S---------------S---SSS--------S-----S-SS---S---S--------------
-S-S----------------------------SSSS------------S-------------------------------
-----------------------------------------------------S------------SS------------
---------------S----------------------------------------------------------------
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----------------S-----------------S-----------------------------------S---------
-----------------S--------------------------------------------------------------
---------------------------------------------------SSSSSS-------------------S---
------------SS--SSSSSS----------------------------------------------------------
--------------S-----------------------------------------------------------------
-------------------------------S------------------------------------------------
---------SS---------------------------------------------------------------------
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---------------S----------------------------------------------------------------
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---------------S-----S----------------------------------------------------------
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----------------------------------------------------------------------S-SSSSSS-S
-----------------------------------------SS-------------------------------------
------S-------------------------------------------------------------------------
-----S-------S-----SSS--------------------S-----------------S-------------------
---S---------------------------------------------------S------------------------
------------------------------------S------------------------------------------S
--------S----S-------------SSS--------------------S----------S---------S--------
--------------S--SSSSSS----------------------------------------S------------SS--
-S---S-S--SSS--S-------------S----S--------------S----------S--------SSSS----S--
---------------------S---S------S--S----S---S---S----S----S---------S---------S-
S-------------S----S----------S-----S------S----SSS
>forward_854
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----------------------------------GAATCATGGCACTGCAGCAG--------------------------
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>reverse_2797
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----------------------------------------------------------------------------GCGA
TCACCCGAATCAGTTC----------------------------------------------------------------
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