>input_sequence_69251
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---------ATGGCGGACTACGGTGGGGAGTACGGGCACCCGTACCCGCGCGTCGACGAGTACGGCAACCCAGTGCCGCC
GGTCGACCAGTACGGCAACCCCATCCCGAGGGAGCCGGGCCAGGTTCCGGCGTACAGCTCGGGGGGCGCCGCTCCGTCCT
ACGGCTCT------GCCGGCGCGGTGACGTCGGCCGACTATGGCGCGGGCGTCACGCCTGGCTACGGCCAGAGAGGCGCC
GTGCACCCGCACGAGAGCGTGGTAGGCGGTGCCGTTTCCCCGTCCGGCGTGGCGCACACGCACGAGGGCGCGCTAAGCGG
CAGCCTCGCCCCTGGAGAGACCACGGCATACGCTTATGAGGGCATGGTCA------GCAGCGGCACCGGCGACCAGATCC
AGCCCACCAAAGAGGGGCACACGACGCTGGGCGAGACTTTGCGTCGCTCCTCCAGCTCTAGCTCCAGCTCGGTACTTACA
TTTTTCGCTCGTTTAATTTGTTCGGCATGTGGGGCTTTATTTGGTCATAGGACGGCACATACTAGTTGCCGTCCTAGTTG
ACTCACTGACTTGCTAATGAGTTACGT----------------GTGGTGCAGTCGTCCGAGGATGACGGGCAGGGCGGGA
GGCAGAGGAAGAAGAAGAGCATGAAGGAGAAGATAAAGGAGAAGCTCCCGGGCAGCCACAAGCAGGAGGAGCACAAGGCC
GGGCACGCAATGCCGCCGGCTGGGACTGGGACGCACGAGAAGAAGGGCATCATGGAGAAGATCAAGGAGAAGCTCCCTGG
ACACCACTGA----------------------------------------------------------------------
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--
>chr3D_1_TraesCS3D01G255500
GTTACTCCCTCCATTTTTAAATATATACAAGACCGTTTAGAGATTTCACAATGAACTATATACAGATGTATATAGACATA
TTTTATAGTATAGATTCACTTATTTTGCTTCATGTGTAGTCTTTAATGAAATACTTAAAAGATTTTATATTTAGGAACGG
AGGGGTAACATCTAATCCTTTTAGTCCTCAGTTTTGATTTTTTACACCTGCTCCCTACGTTCTGAATTACTTGTCGCACG
TATGGATGTATCTAGATATATTTTAGTTCTAGATACATCTATTTCAGCGACGAGTAATTTGGAACGGAGGGAGTAGCTCA
GTATGCTTATCTCTTAGTAGTACTAATGTTATAGGTTGCAAAATCATACT---GAATAATTTGAAAGTACATGATCATTT
CCCATGTAAAACCAGGGCGCGAAATCACCCTACCATCGCGAGAACAGCCTGCGTGTTGAACGTCGCACAGCGGAAGAGAC
GCCGTCGAACTGACCGGGACGGATCCTGTGCCACCGCCCACCGG---CGGCCGAGGCTTTGCCCCAGAGCACCGTCGAGA
GTCCATGGTGGTTCTTTCTTGTGATCTGTATAAACGCGATGCATCAGGTCGATTCAGGACATCTTTGTTGTGGTAGTACT
AATAATATTTCAGGCACTGT-TATTGATCTGATCAGAAAAATGTCAGCAAGTATAGATATGGCTGCGACCTGAACTCGAA
CCGATGGCATGTA-----TACTCCAACATAATGCGTACAATCAACTTCGGATATTTTGGGATGTGCTC-TTTCACTGTTC
AGCTGGTGCTTCCTCCCAGGTCGGCCCAAAACGTGGCACGCCCTCAGAATACGTGTCGTTCTCCTCAGGTAGACGGTGAA
CTCGTGGCGGCATGCATGCACACGTGGCGTCCCTGCCCTTATCGCTCTACCGAGTTGCTCCTCGTACTTATACGTG----
GTGTCGTGGACCATGGTGGCACACTG------AAGCCACCGACCCAAATTGTGAGAGCATC-------------------
-------TAATGGCGGACTACGGTGGGGAGTACGGGCACCCGTACCCGCGCGTCGACGAGTACGGCAACCCAGTGCCGCC
GGTCGACCAGTACGGCAACCCCATCCCGAGGGAGCCGGGCCAGGTTCCGGCGTACAGCTCGGGGGGCGCCGCTCCGTCCT
ACGGCTCT------GCCGGCGCGGTGACGTCGGCCGACTATGGCGCGGGCGTCACGCCTGGCTACGGCCAGAGAGGCGCC
GTGCACCCGCACGAGAGCGTGGTAGGCGGTGCCGTTTCCCCGTCCGGCGTGGCGCACACGCACGAGGGCGCGCTAAGCGG
CAGCCTCGCCCCTGGAGAGACCACGGCATACGCTTATGAGGGCATGGTCA------GCAGCGGCACCGGCGACCAGATCC
AGCCCACCAAAGAGGGGCACACGACGCTGGGCGAGACTTTGCGTCGCTCCTCCAGCTCTAGCTCCAGCTCGGTACTTACA
TTTTTCGCTCGTTTAATTTGTTCGGCATGTGGGGCTTTATTTGGTCATAGGACGGCACATACTAGTTGCCGTCCTAGTTG
ACTCACTGACTTGCTAATGAGTTACGT----------------GTGGTGCAGTCGTCCGAGGATGACGGGCAGGGCGGGA
GGCAGAGGAAGAAGAAGAGCATGAAGGAGAAGATAAAGGAGAAGCTCCCGGGCAGCCACAAGCAGGAGGAGCACAAGGCC
GGGCACGCAATGCCGCCGGCTGGGACTGGGACGCACGAGAAGAAGGGCATCATGGAGAAGATCAAGGAGAAGCTCCCTGG
ACACCACTGAGCAACGTCGACAT-----CTGCGCGCCTCAGTTGACACGGATTCGCTTCTTGGACCATGTAT--------
---GACCTAAATGATCACTCGCTGGTGTATAATGAGCTCGCTA--GCCTTCTGTATAATGATCAAGGGTATTTCCTTCTG
CCTTCTTCGTG--TGTGATCGGTGTTGATA-GTTGTACGAGCTAGATTTGGGGTCATTCGAGTTGGTGTATGGCTAATGT
CTGTGCTACCGGGCAAGTCAAAGTTCTTTCCTTCCTCACAATAGAAGTCTTTCCTCCTGCCTCCGTCGCCGCGGCCGCTC
CGCCTCACCTCTGACCTCCTTTGGGCCATGGAGGTGCAGGGGACCTCGGCTCCTAGCCAGCGGGAGGACCTGGTCTTGTT
CTTGCTAGGTTCATTGTCTTGGAT-----------TGGATGGGGCTGTGTGGCGACGGTGATGTTTCAAAGTAGGAATAT
TGTCTTTCATGTTCTATCCCCGTTTCGATTTTGATTGTGCGTCTCCTCAGAGCATGTGGAGGCGTCTCTTCGTCGAGTCT
CATGCTTCACTGAAGAGCGTGTGGAGTTGTGGCGTGTGGAGTCTCTGTCGGGTCTTGTGGGATTCGGTTGTCGGGTCTTA
TGGGATTCGGTCGGTACTAGTTTTCAGTCTCTGTCGGGTCTTATGGGATTCGGTTGTCGGGTCTTATGGGATTCGGTCGG
TACTAGTTTTCAGTGGGCCTGTTTGGATCTGGTCGTTTGTCTTTTACCTGTTTACAGGTTTCATCCTTTCAATCTACGAT
TTTCTTAATTGGCGATGATCTTTCCTAATGCGGTGGGACTATGGGCTTAGCACGACGGTTTTCTAATTATTTACTAGGTT
TTTTAATTATTTACTACAACAAAATTTGCCTGACTCTGATAAAAAAGGAGCGATGATGGGGCGCGTAGTACTGGTAGTCT
TCGCTAGATGGTGCATGAATCTGCTTGTAATTTTCATTATCTTCGATGTTTCTTGTATTGCGAATGTATAGATTGTAAGT
TC
>chr3B_156
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---------------------------------------------------------------------------AACGG
AGGGGTAGCATCTAATCCTTTTAGTCCTCAGTTTTGGTTTTTTACACT--------------------------------
-------------------------------------------------------------------------TAGCTCA
GTGTGCTTATCTCTTAGTTTTAAT-ATGGTATAGGTAGCAAAATCACACTACCGAATAATTTGAAATTACATCATCATTT
CCCATGTAAAACCAGGGCGCGAAATCACCCTACCATCGCGAGAACAGCCTGCGTGTCGAATGTCGCACGGCGGAAGAGAC
GCCGTCGAACTGATCGGGATGGATCCTGTGCCACCAGCAACAGCCCACGGCCGAGGCTTTTCCCCAGAGCACCGTCGAGA
GTCCATGGCGGTTCTTTCTTGCGATCTGTATAAACGCGAGGCATCAGGTCGATTCAGGACATCTC-GTTGTGGTAGTACT
AATAATATTTCAGGCACTGTCTATTGATCTGATCAGAAAAATATCAGC---------TATGGCTGCGATCTGAACTCGAA
CCGATGGCATGTA-----TACTCCAGCATAATGCGTACAACCAACTTCGGATATTTTGCGACGTGCTCTTTTAATTGTTC
AGCCGGTGCTTCCTCCCAGGTCGGTCCAAAACGTGGCACGCCCGGAGAATACGTGTCGTTCTCATCAGGTAGACGGTGAA
CTCGTGGCGGCATGCATGCA-ACGTGGCGTCCCTGCACTTATCGCCCTACAGAGGTGCTCCTCGTACATATACGTG----
GTGTCGTGGACCATGGTGCCACACTGACTCGCAAGCCACCGACCCAAATTGTGAGAGCATC-------------------
-------TAATGGCGGAGTACGGTGGAGGGTACGGGCACCCGTACCCGCGCGTCGACGAGTACGGCAACCCAGTGCCGCC
GGTCGACCAGTACGGCAACCCCATCCCGAGGGAACCGGGCCAGGTTCCGGCGTACAGCTCGGGGGGCGCCTCTCCGTCCT
ATGGCTCT------GCCGGCGCGGTGACGTCGGCCGACTATGGCGCGGGTGTCACGCCGGGCTACGGCCTGAGCGGCGCC
GTGCACCCACACGAGAGCGTGGTAGGCGGTGCCGTTTCCCCGTCCGGCGCGGCGCACACGCACGAGGGCGCGCTAAGCGG
CGGCCTCGCCCCTGGCGAGACAACTGCATACGCTTATGAGGGCATGGTCGGCAGGGGCATCAGCACGGGCGACCAGATCC
AGCCCACCAAAGAGGGGCACACGACACTGGGCGAGACTTTGCGGCGCTCCTCCAGCTCTAGCTCCAGCTCGGTACTTTCA
TC-TTCGCTCGTTTAATTTGTCAGACATATGGGGCTTGATTCGGTTGTAGGACG--------------------------
-----------------------AATGGTTTACGTGTGGT---GTGGTGCAGTCGTCCGAGGATGACGGGCAAGGCGGGA
GGCAGAGGAAGAAGAAGAGCATGAAGGAGAAGATAAAGGAGAAGCTCCCGGGCAACCACAAGCAGGAGGAGCACAAGGCC
GGGCACACGGTGCCGGCGGCTGGGACAGGGACGCATGAGAAGAAGGGCATCATGGAGAAGATCAAGGAGAAGCTCCCTGG
ACACCACTGAGCAACGTTAACGTGTGCACTGCACGCCTCAGTTTCGCT--------TTCTTGGACCATGTACGACTTATG
TACGACCTAAATGATCACTGGCTCGTGTATAATGAGCTCGCTA--GCCTTATGTATAATGATCGAGGGTATTTCCTTCTG
CCTTCTTCGTG--TATGATCGGTGTTGATAGGTTGTACGAGCTAGATTTGGGGTCGTTTGAGTTGGTGTATGGCTAATGT
CTGTGCTACTGGACAAGTCG-AGTTCTTTCCTTCCTCACAAGGAAAAGTCTT--TCCTCCCTCTGACGCTGCGGCCGGTT
CGCCTCACCTCCGACCTCCTTTGGGCCATGGAGGTGCAGAGGGG---------------GCGGGAGGACCTCGTTC---T
CGTGTTAGGTTCATTGTCTTGGATGGTGCTTGTCTTGGATGGTGCTGTGTGACGACGGTGATGTCCGAAAGTAAGAATAA
TGTC--TCATGTTCTATCCCGTTCCGAT----------------------------------------------------
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>chr3A_324
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---TGCTTACCTTTTAGTAGTAGTACTAAT----GTTGCAAAATCATACT---GAATAATTTGAAATTACATGATCATTT
CCCATGTAAAATCAGGGCGCGAAATCACCCTACCATCGCGAGAACAGCCTGCGTGTTGAACGTCGCACGGCGGAGGAGAC
GCCGTCGAACTGACCGGGACGGATCCTGTGCCACC-------GG---CGGCCGAGGCTTTTCCCCAGAGCACCGTCGAGA
GTCCATG---GTTCTTTCTTGTGATCTGTATAAACGCGAGGCATCAGGTCGATTCAGGACATCTT-GTTTTGGTAGTACT
AATAATATTTCAGGCACTGTCTATTGATCTGATCAGAAAAATATCAGCAAGTATAGATATGGCTGCGATCTGAACTCGAA
CCGATGGCATGTACTGTATACTCCAACATAATGCGTACAATCAACTTCGGATATTTTGGAATGTGTTC-TTTCACTGTTC
AGCCGGTGCTTCCTCCCAGGTCGGCCCAAAACGTGGCACGCCCGGAGAAAACGTGTCGTTCTCCTCAGGTAGACATTGAA
CTCGTGGCGGCATGCATGCACACGTGGTGCCCCTGTGCTTATCGCCCTGCCGCCCTGCTCCTCGTACATATACGTGCGTT
GTGTCGTATATCATGGTGCCACACTGACTTGCAAGCCACCGCCCCAAACTGTGAAACCCCGTCAGAAGGAAGCACCGTCG
AGAGAAGTAATGGCGGACTACGGTGGAGAGTACGGGCACCCGTACCCGCGCGTCGACGAGTACGGCAACCCAGTGCCGCC
GGTCGACCAGTACGGCAACCCCATCCCAAGGGAACCGGGCCAGGTTCCGGCGTACACCTCGGGGGGCGCCGCTCCGCCCT
ACAGCTCTGACGGCGCGGGCGCGGTGACGTCGGCCGACTATGGAGCGGGTGTCACGCCGGGCTACGGCCTGAGCGGCGCC
GTGCACCCGCAGGAGAGCGTGGTAGGCGGTGCCGTTTTCCCGTCCGGCACGGCGCACACGCACGAGGGCGCGCTAAGCGG
CAGCCTCGCCCCTGGCGAGACCACGGCATACGCTTATGAGGGCATGGTCGGCAGTGGCATCGGCACCGGCGACCAGATCC
AGCCCACCAAAGAGGGGCACACGACGCTGGGCGAGACTTTGCGGCGCTCCTCCAGCTCTAGCTCCAGCTCGGTACTC-CA
TTTTTCACTCGTTTAATTTGTTCAGCATGTGGGGCTTGATTCGGTCGTAGGAGGACGCGTACTACTTGACTCACTATA--
--------ACTGGCTAATGGCGTAATGGTTTATGTGTGGTGTGGTGGTGCAGTCGTCCGAGGATGACGGGCAAGGCGGGA
GGCAGAGGAAGAAGAAGAGCATGAAGGCGAAGATAAAGGAGAAACTCCCGGGCAGCCACAAGCAGGAGGAGCACAAGGCC
GGGCACACGGTGCCACCGGCTGGGACGGGGACGCAC------------------GAGAAGATCAAGGAGAAGCTCCCTGG
ACACCACTGAGCAACATCAACAT-----CTGCGCGCCTCAGTTGACACGGATTCGCTTCTTGGACCATGTAC--------
---GACCTAAATTGTCACTCGCTGGTCTGTAATGAGCTCGCTATAGCCTTCTGTACAATGATTAAGGGTATTTCCTTCTG
CCTTCTTCGTGTGTGTGATCGGTGTTGATAG-TTGTATGAGCTAGATTTGGTGTTGTTCGTGTTGGTGTATG--------
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--
>SNPs
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS-----
-------S----------------------------S----------SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS-------
--S-------------------S-----S-------------------------------------S-------------
--------------------------------------------------------------------S-----------
-----------------------------------SS-S--S------------------S-------------------
--------S------------------------------S-------------------------S--------------
------------------------------------------S-------------------------S-----------
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---S---------------------------------------SS-----------------------------------
------------------------------------S--------S--------S------------S------------
------------------S-------------------------------------------------------------
--------------------------S-----------------------------------------------------
---------------------------------S----------------------------------------------
-------------------------------------------------S--------S----------S---S------
-------------------------------------------------S------------------------------
---------------S---------------------------------S---------S--------------------
-------------------------------------------S---------------------------------S--
-------------------------------------S---S----S-------S-S-S-----S---S-SSS---SSSS
SSSSSSSS---S-------SSS--SSS---------------------------------------------S-------
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------S-SS----------------S-----------------------------------------------------
------------------S----------------------------------------------------S--------
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-------------------------------------------------------S------------------------
---------S--S------SS--------------------SSS--SSSS--SS----S----S-S---S-------S-S
-----------S---------------------------S--SSSSSSSSSSSSSSSSS------------S--SSSSS-
-S--S-------------------------------------S--------S------------SSS------S-----S
----SS--------------SS-SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SS
>forward_224
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--------------------------------------------CACCTGCTCCCTACGTTCTG----------------
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>reverse_1622
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---------------------TTACGTGTGGTGCAGTCGTC---------------------------------------
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--
>forward_1410
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------------------------------CGCTTATGAGGGCATGGTCA------------------------------
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--
>reverse_2780
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-----------------------------------------------------------GGCGCGTAGTACTGGTAGTC-
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--
