>input_sequence_69215
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
-----------------------------------------------------------ATGGCGCCGGCGGACAGCCAC
GGGGAGTTTTTGGAATTGGAGGACGCGCTGAGGTACATGAAGATGGTCAAGAACCGGCACCCGGCGACGTACAACGAGTT
CCTAAACGTCATGGCTCATTACAAGAGGGGCAGGTATATATGTCC--AATCCATGTCGATCAACGTATTAATTCGCTCCA
TGCATGCATGGATCGACCGACCAACGTATGTATGACTTCGTGCAGGATCGGCATCGCCGAGGTGGCGTCGAGGGTGGCGG
CACTGCTCAGGGACAGCCCCGACCTCATCGTCGGCTTCAACGCCTTCTTGCCCAAGGGCCACCGGATCCGTCTATCCGAC
GAACAAGCGGCGGCGATAGAGAAGCCAACGACCTTCGTGAAGGCGGTGATGAACACGCACCCGTCCACGTACCGCGAGTT
TCTCCGCATCATATTCGACGAATACGGGAGGGACGGGTACGTA----GTGATCCATACCTATGTATAGTTCATGGTTGGT
TGGATCCATGGAGGTTAAAAAGTGGTTAAC----TAATATTATGAGATGTGGGTTCATGCATGGCTT-----CATGGCAG
GATCGGCATCGCG------GAGGTGGCGTCGAGGGTGGGAGTGCTGTTCCGGGATAGGCCGGACCTCATCGCCGGCTTCA
ACGCCATATTGCCAAGAGAGCACAAGATCAAGGTCGTCGGCGGGGTGGATGAGCATGAGCTTGCCGCTCGTTTCATGAGA
GAAGTGAGCCTAGATGACCACGATGACGATAAGATCCACGATGGATGTAATTAA--------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
----------------------------------------------
>chr3A_1_TraesCS3A01G002800
AATTTATTTACCCACCGTATGCTTTTTGTTTGAAAAAGAAAGCTCTAGTGAAAATTATGGCCCCCGGTTCTACCTTTATA
ATATATTAAAATTCAAAAATACATTGTTGCAATTTATTTACCGTTATTTTATTTTGTGTTTTTATTTATCTATCACTATG
AGATTTGATCCTTACAATTAACCGTCAAGGGATTGACAACCCCTTGTTTGCCTTCGATGCAAGTATTTATTATTTCGTGT
GTATGTGTTCTTCACAAGGTCTTGCGAGGTTCCACTACTGGATTGATAAGCTTGGTTCTTAACTGAGGGAAATACTTATC
TCTACTGTACTGCATCATTTTCTCTTTTCCGAAGAAATTCCAACGTAACTCATAAGTAGCACCGCCCCGGCATCCAAGAC
CACCCCTCCAACACCACCACGGAAGAGAAGAGAACCACCGGTGAAGAGTAGAAGGCCGCTCCTTCCTACCCAAAAACGAA
GCCATGGTCGGGACGAGTTCCAACCGGCCTGGACTGGGCAAGGGGAGAACAATAGCCGCACCCTTAGGGTTCGCGACAGG
CGAGATATATTCCTAGCATTCCTTTTTTGCCCATACCACAAAACCGATCAAACCCAATGGAAATCGGCGGGCCGGCCGAC
TACAAGCAACCGACGCTTTACTACGCGAGGAATAGAACGCTCGTACGGGTTTTTTTTTTTTGGCAAGGTTAGAACGACTT
GTACGTACGTGCTGGCCTGTGCTTTTGGTGTTCGTCCGCGTACCTAATTTTCTGGCGCTGAAAGTCCTAGTGCTATACTT
CACCTATGTCCGTGTACGTCCCTGAGTCAAGTAGCTGCCGGATGTTTTGTCCGTGTCAAGGACAAGGTAATAACGG---G
ATTGACGTGGATACGTTTATATATTTCTATATATGATG-----------TGATCGAATCAAAGACATAGATCAGTAGTCC
AAG-----CTGGGCAGAATCAAGAGGAGAAGAAGAGCAAGAAGCTAGTTAGCTGCTCCAATGGCGCCGGCGGACAGCCAC
GGGGAGTTTTTGGAATTGGAGGACGCGCTGAGGTACATGAAGATGGTCAAGAACCGGCACCCGGCGACGTACAACGAGTT
CCTAAACGTCATGGCTCATTACAAGAGGGGCAGGTATATATGTCC--AATCCATGTCGATCAACGTATTAATTCGCTCCA
TGCATGCATGGATCGACCGACCAACGTATGTATGACTTCGTGCAGGATCGGCATCGCCGAGGTGGCGTCGAGGGTGGCGG
CACTGCTCAGGGACAGCCCCGACCTCATCGTCGGCTTCAACGCCTTCTTGCCCAAGGGCCACCGGATCCGTCTATCCGAC
GAACAAGCGGCGGCGATAGAGAAGCCAACGACCTTCGTGAAGGCGGTGATGAACACGCACCCGTCCACGTACCGCGAGTT
TCTCCGCATCATATTCGACGAATACGGGAGGGACGGGTACGTA----GTGATCCATACCTATGTATAGTTCATGGTTGGT
TGGATCCATGGAGGTTAAAAAGTGGTTAAC----TAATATTATGAGATGTGGGTTCATGCATGGCTT-----CATGGCAG
GATCGGCATCGCG------GAGGTGGCGTCGAGGGTGGGAGTGCTGTTCCGGGATAGGCCGGACCTCATCGCCGGCTTCA
ACGCCATATTGCCAAGAGAGCACAAGATCAAGGTCGTCGGCGGGGTGGATGAGCATGAGCTTGCCGCTCGTTTCATGAGA
GAAGTGAGCCTAGATGACCACGATGACGATAAGATCCACGATGGATGTAATTAATATCTCTCACTATTGCTATACTATTA
TACTCCATCAACGTAGAGCGAGCGTATATATTTTTCAAACTTCAAGCTTTGCATATTTCGGTAAAATCTGTTGAGAAAGT
ATCAACATCTACAATACTAAATTTAACTAGTAGGGTATGCTCGATTTTGATGCATGTGATCACATTGATTCCAACCTAAA
TCAATGCAATTATCGGTGAATGTTGTTAATATTGTAAAAAGTGTATCCTCGCTCGCGCTCATCATAACATGCTACTACCT
CTGCCTGTAAAGAAATATAAGATCGTTGTTTAGATCACCACTTTAGTGGTCTAAACAATCTTACATTTCTTTACAGAGAG
AGTATTTTCTAATGGGAAACGACGCCTCCTGCACTCCAAGTCTCCCTCTCCATTATCGCTTACCCCAGCCCTCACAATAA
CGCCATTCCCTTGGTGCTATTTTTAATTCTTGTTTCTCACGAACCATGTGCTGGTAGGTGTATAATTAATTAAATAAAAG
CCGAGGGTGCTTTTCTATAGAAAAAGA-CAATGCGTGGCTCATCCAACGCCTCACCACTCCGGACCTCTGACATGTGGGC
CGCATTCATGCTAACATGCCACGTGAGCACGAGATACAACTCGATACGGAAGAAGTGACCGTATATGCACGCATAGACAA
GTTATGTTACTACAATGACGCA-----------------------TAAACTGAACATT-----GGATGCAAGTTCTTTTA
CTGCCACTGATGTTACCTTTTCAAGTATTCATTAGTTTCGAAGCCATCAACGCGAAGGACACAACAA--TTAATTGTTTG
CGACGTAGACA-TCAGTTTAAAATATATTTCTGTTCAAAATTTGGATTTGAGAAGAAAGAAGAAAACACGTCCATCAAAT
TCAAACCACCTGCACCCCTCGAACAGCAGAAAAATCTCATCTATCGACCCTCCACATGGGATTATTTATTTTCCCACGTA
TCATGGGAAAACAAATACTAAGCACATCCAACAACTCCCTCAATCC
>chr3A_532
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
---------------------------------------------------ATAGCCGCACCCTTATGACTTACGTTGAG
CGAGATATATTCCTAGCATTCCTTTTTTT-CCATGCCACAAAACTCATCGAACCCAGTGATA------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
---------------------------------------------------ATCGAATCAAAGACATAGATCAGTAGTCC
AAG-----CTGGGAAGAATCAAT-----------AGTAAGAAGCTAGTTAGCTGCTCCAATGGCGGCGGCGGACTGCCAC
GGGTAGTTTTTGGAATTGGAGGACGCGATCAGGTACATGAAGATGGTGGAGAACCGCCATCCGCCGAGGTACAGCGAGTT
CCTCGGCGTCATGGTTGATTACAAGAGGAGCAGGTAC----GTCC--CATCCATGTCGATAAATGCATAAATTTGCTCCA
C----GCATGGATCGACCGACCAACA----TTTGACCGCCTGTAGGATCGGCGCCGCT--GGTGGTGTCGACGGTGGCGT
CGCTGTTTAGGGACAGCCCCAACCTCATCGCCGGCTTCAACTCCTTCTTGCCCAAGGTCCACCGGATCCGTCTATCGGAC
GAACAAGCGGCGGGTTTAGAGGAGCCGACGAGCTTCGTGAAGGTGGTGATGAACACGCACCCGGCCACGTACCCCGAGTT
TCTCCTCATCCTATTCGACGACTACGGGAGGGACGGGTGCGTA-------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
----------------------------------------------
>chrUn_758
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
-------------------------------------GCGTGCCTAATTTTCTGGCGCTCAAAGTCCTAGTGCTATATTT
CAGGTACGTCCGTGTACGTCTCTGAGTCAAGTAGCTGCCGGATGTTTTGTCCGTGACAAGGACAAGGTAATAACGG---G
ATTGCCATGGATACGTTTATATATTTCTATATATGATGGTCATTAGGTTTGATCGAATCAAAAACATAGATCAGTAGTCC
AAGTCAAGCTGGGCAGAATCAAGAGGAGAAGAAGAGTAAGAAGCTAGTTAGCTGCTTCAATGGCGCCGGCGGACAGTCAC
GGGGAGTTTCTGGAATTGGAGGACGCCTTGAGGTACATGAAGATGGTGAAGAACCGGCACCCGGCGACGTACAGCGAGTT
CCTCCGCGTCATGGTTGATTACAAGAGGGGCAGGTAC----GTCC--TATCCATGTCGATAAACGCATAAATTTGCTCCA
C----GCATGGATCGACCGACCAACA----TTTAACGGCGTGCAGGATCGGCGTCGCCGAGGTGGCGTCGACGGTGGCGG
CGCTGTTCCGGGACACCCCCTACCTCATCGCCGGCTTCAACGCCTTCTTGCCCAAGCGCCACCGGATCCGTCTATCAGAC
GAACAGGCCGCGGGTTTAGAGAAGCCGACGACCTTCGTGAAGGCGGTGATGAACACGAACCCGGCCACCTACCGCGAGTT
TCTCCGCATCATATTCGACGAATACGGGAGGGACGGGTACGTACCTAGTGATCCATACATATGTATAGTTTATGGTTGGT
TGGATCCATGGAGGTTAAAAAGTGGTTAAC----TAATATTATGAGCTGTGGGTTCATGCATGGCTT-----CATGGCAG
GATCGCCATCGGCATCACAGAGGTGGCGTCGAGGGTGGGAGCCCTGTTCCGGGATAGCCCGGACCTCATCGCCGGCTTCA
ACGCCATACTGCCGAGAGAGCACAAGATCGAGGTCGTCGGTGGGGTGGATGAGCATGAGCTTGCCGCTCGTTTCGTGAGA
GAAGTGAGCCTAGATGACCACAATGACGATAAGATCCACGATGGAT------AATATCTCTCACTATTGGTATACTATTA
TACTCCATCAACGTA-AGCGAGCGTACATATTTTTCAAACTTCAAGCTTTGCATATTTCGGTAAAATCTGTTGAGAAAGT
ATCAACATCTACAATACTAAATTTAACTAGTAGGGTATGCTCGATTTTGATGCATGTTATCACATTGATTCCAACCAAAA
TCAATGCAATTATCGGTGAATGTTGTTAATATTGTAAAAA-TGTATCCTCACTCGCGCTCATAATTACATGCTACTACCT
CTGTATGTAAAGAAATGTAAGATTGTTTA-TAGATCACTAC---------------------------------------
--TATTTTCTAATGGGAAACGACGCCTCCCGCACTCCGAGTCTCCCACTCCCTTATCGCTTACCCTATCCCTCGCAATAA
CGCCATTCCCT-GGTGCTATTTTTAATTCTTGTTTCTCACGAACCATGTGCTGGTAGGCGTA----TAATTAAATAAAAG
CCGAGGGCGCTTTCTACA--AAAAAGA-CAATGCGTGGCTCACCCAACGCTTCACCACTCCGGGCCACTGACATGTGGGG
CGCATTCATGCTAACATGCCAC-TGAGCATAAGATACAGCTGGATACGGAAGAAGTGACCGTATATGCACGCATAGACAA
GTTATGTTACTGCAATTT-----CGTATTTTGCAAATTTTAGTACTAAACTGAACATT-----AGATGCAAGTTCTATGA
CTGCCACTGATATTATCTTTTCAAGTATTCATTAGTTTCAAAGCCATGGACGCGAAGGACACAACAAAATTAATTGTTTG
CGATCTAGACGCTCAGTCTAAAATATATTTCTGTTCAAAATTTGGATTTCAGAAAAAAGAAGAAAACATGCCCATCAAAT
GCAAACCACCTGCACCCCTCGAACGGGAGAAAAATCTCATCTATGGACCCTCTATATGCGATTATTTATTTTCCCACGTA
TCATGGGAAAACAAATACTAAGCACATCCAACAACTCCCTCGATCC
>chrUn_758
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
-------------------------------------GCGTGCCTAATTTTCTGGCGCTCAAAGTCCTAGTGCTATATTT
CAGGTACGTCCGTGTACGTCTCTGAGTCAAGTAGCTGCCGGATGTTTTGTCCGTGACAAGGACAAGGTAATAACGG---G
ATTGCCATGGATACGTTTATATATTTCTATATATGATGGTCATTAGGTTTGATCGAATCAAAAACATAGATCAGTAGTCC
AAGTCAAGCTGGGCAGAATCAAGAGGAGAAGAAGAGTAAGAAGCTAGTTAGCTGCTTCAATGGCGCCGGCGGACAGTCAC
GGGGAGTTTCTGGAATTGGAGGACGCCTTGAGGTACATGAAGATGGTGAAGAACCGGCACCCGGCGACGTACAGCGAGTT
CCTCCGCGTCATGGTTGATTACAAGAGGGGCAGGTAC----GTCC--TATCCATGTCGATAAACGCATAAATTTGCTCCA
C----GCATGGATCGACCGACCAACA----TTTAACGGCGTGCAGGATCGGCGTCGCCGAGGTGGCGTCGACGGTGGCGG
CGCTGTTCCGGGACACCCCCTACCTCATCGCCGGCTTCAACGCCTTCTTGCCCAAGCGCCACCGGATCCGTCTATCAGAC
GAACAGGCCGCGGGTTTAGAGAAGCCGACGACCTTCGTGAAGGCGGTGATGAACACGAACCCGGCCACCTACCGCGAGTT
TCTCCGCATCATATTCGACGAATACGGGAGGGACGGGTACGTACCTAGTGATCCATACATATGTATAGTTTATGGTTGGT
TGGATCCATGGAGGTTAAAAAGTGGTTAAC----TAATATTATGAGCTGTGGGTTCATGCATGGCTT-----CATGGCAG
GATCGCCATCGGCATCACAGAGGTGGCGTCGAGGGTGGGAGCCCTGTTCCGGGATAGCCCGGACCTCATCGCCGGCTTCA
ACGCCATACTGCCGAGAGAGCACAAGATCGAGGTCGTCGGTGGGGTGGATGAGCATGAGCTTGCCGCTCGTTTCGTGAGA
GAAGTGAGCCTAGATGACCACAATGACGATAAGATCCACGATGGAT------AATATCTCTCACTATTGGTATACTATTA
TACTCCATCAACGTA-AGCGAGCGTACATATTTTTCAAACTTCAAGCTTTGCATATTTCGGTAAAATCTGTTGAGAAAGT
ATCAACATCTACAATACTAAATTTAACTAGTAGGGTATGCTCGATTTTGATGCATGTTATCACATTGATTCCAACCAAAA
TCAATGCAATTATCGGTGAATGTTGTTAATATTGTAAAAA-TGTATCCTCACTCGCGCTCATAATTACATGCTACTACCT
CTGTATGTAAAGAAATGTAAGATTGTTTA-TAGATCACTAC---------------------------------------
--TATTTTCTAATGGGAAACGACGCCTCCCGCACTCCGAGTCTCCCACTCCCTTATCGCTTACCCTATCCCTCGCAATAA
CGCCATTCCCT-GGTGCTATTTTTAATTCTTGTTTCTCACGAACCATGTGCTGGTAGGCGTA----TAATTAAATAAAAG
CCGAGGGCGCTTTCTACA--AAAAAGA-CAATGCGTGGCTCACCCAACGCTTCACCACTCCGGGCCACTGACATGTGGGG
CGCATTCATGCTAACATGCCAC-TGAGCATAAGATACAGCTGGATACGGAAGAAGTGACCGTATATGCACGCATAGACAA
GTTATGTTACTGCAATTT-----CGTATTTTGCAAATTTTAGTACTAAACTGAACATT-----AGATGCAAGTTCTATGA
CTGCCACTGATATTATCTTTTCAAGTATTCATTAGTTTCAAAGCCATGGACGCGAAGGACACAACAAAATTAATTGTTTG
CGATCTAGACGCTCAGTCTAAAATATATTTCTGTTCAAAATTTGGATTTCAGAAAAAAGAAGAAAACATGCCCATCAAAT
GCAAACCACCTGCACCCCTCGAACGGGAGAAAAATCTCATCTATGGACCCTCTATATGCGATTATTTATTTTCCCACGTA
TCATGGGAAAACAAATACTAAGCACATCCAACAACTCCCTCGATCC
>chrUn_758
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
-------------------------------------GCGTGCCTAATTTTCTGGCGCTCAAAGTCCTAGTGCTATATTT
CAGGTACGTCCGTGTACGTCTCTGAGTCAAGTAGCTGCCGGATGTTTTGTCCGTGACAAGGACAAGGTAATAACGG---G
ATTGCCATGGATACGTTTATATATTTCTATATATGATGGTCATTAGGTTTGATCGAATCAAAAACATAGATCAGTAGTCC
AAGTCAAGCTGGGCAGAATCAAGAGGAGAAGAAGAGTAAGAAGCTAGTTAGCTGCTTCAATGGCGCCGGCGGACAGTCAC
GGGGAGTTTCTGGAATTGGAGGACGCCTTGAGGTACATGAAGATGGTGAAGAACCGGCACCCGGCGACGTACAGCGAGTT
CCTCCGCGTCATGGTTGATTACAAGAGGGGCAGGTAC----GTCC--TATCCATGTCGATAAACGCATAAATTTGCTCCA
C----GCATGGATCGACCGACCAACA----TTTAACGGCGTGCAGGATCGGCGTCGCCGAGGTGGCGTCGACGGTGGCGG
CGCTGTTCCGGGACACCCCCTACCTCATCGCCGGCTTCAACGCCTTCTTGCCCAAGCGCCACCGGATCCGTCTATCAGAC
GAACAGGCCGCGGGTTTAGAGAAGCCGACGACCTTCGTGAAGGCGGTGATGAACACGAACCCGGCCACCTACCGCGAGTT
TCTCCGCATCATATTCGACGAATACGGGAGGGACGGGTACGTACCTAGTGATCCATACATATGTATAGTTTATGGTTGGT
TGGATCCATGGAGGTTAAAAAGTGGTTAAC----TAATATTATGAGCTGTGGGTTCATGCATGGCTT-----CATGGCAG
GATCGCCATCGGCATCACAGAGGTGGCGTCGAGGGTGGGAGCCCTGTTCCGGGATAGCCCGGACCTCATCGCCGGCTTCA
ACGCCATACTGCCGAGAGAGCACAAGATCGAGGTCGTCGGTGGGGTGGATGAGCATGAGCTTGCCGCTCGTTTCGTGAGA
GAAGTGAGCCTAGATGACCACAATGACGATAAGATCCACGATGGAT------AATATCTCTCACTATTGGTATACTATTA
TACTCCATCAACGTA-AGCGAGCGTACATATTTTTCAAACTTCAAGCTTTGCATATTTCGGTAAAATCTGTTGAGAAAGT
ATCAACATCTACAATACTAAATTTAACTAGTAGGGTATGCTCGATTTTGATGCATGTTATCACATTGATTCCAACCAAAA
TCAATGCAATTATCGGTGAATGTTGTTAATATTGTAAAAA-TGTATCCTCACTCGCGCTCATAATTACATGCTACTACCT
CTGTATGTAAAGAAATGTAAGATTGTTTA-TAGATCACTAC---------------------------------------
--TATTTTCTAATGGGAAACGACGCCTCCCGCACTCCGAGTCTCCCACTCCCTTATCGCTTACCCTATCCCTCGCAATAA
CGCCATTCCCT-GGTGCTATTTTTAATTCTTGTTTCTCACGAACCATGTGCTGGTAGGCGTA----TAATTAAATAAAAG
CCGAGGGCGCTTTCTACA--AAAAAGA-CAATGCGTGGCTCACCCAACGCTTCACCACTCCGGGCCACTGACATGTGGGG
CGCATTCATGCTAACATGCCAC-TGAGCATAAGATACAGCTGGATACGGAAGAAGTGACCGTATATGCACGCATAGACAA
GTTATGTTACTGCAATTT-----CGTATTTTGCAAATTTTAGTACTAAACTGAACATT-----AGATGCAAGTTCTATGA
CTGCCACTGATATTATCTTTTCAAGTATTCATTAGTTTCAAAGCCATGGACGCGAAGGACACAACAAAATTAATTGTTTG
CGATCTAGACGCTCAGTCTAAAATATATTTCTGTTCAAAATTTGGATTTCAGAAAAAAGAAGAAAACATGCCCATCAAAT
GCAAACCACCTGCACCCCTCGAACGGGAGAAAAATCTCATCTATGGACCCTCTATATGCGATTATTTATTTTCCCACGTA
TCATGGGAAAACAAATACTAAGCACATCCAACAACTCCCTCGATCC
>chr3D_777
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------GCTGAAAGTCCTACTGCTATACTT
CAGCTACGTCCGTGTACGGCTGTGAGTCAAGTAGCTGCTGGGTGTTC-GTCTGTGACAAGGACAAGGTAATTACTACTAG
ATGGACACGGATTCGATTATATGTTTCTATATATGATGGTAGTTGGGTTTGATCGAATCAAAGACATAGATCGAATCAAG
GTAATTACTA---------------------------------CTAGTTAGCTGCTCCAATGGCCGCGGCGGACAGCCAC
GGGCAGTTTTTGGAATTGGAGGACGCGGTGAGGTACATGAAGATTGTGGAGAACCGCCATCCGGCGAGCTACAGCGAATT
CCTCGGCGTCATGGTTGATTACAAGAGAGGCAGGTATGCCCTATATATATCCATGTCGATCAACGTATAAATTTGCTCCA
T----GGATGGATCGACCGACCAACA----TTTGACGGCGTGCAGGATCGGCGTCGCCGAAGTGGCGTCGACGGTGGCGG
CACTGTTCCGGGACAGCCCCAACCTCATCGTCAGCTTCAACGCCTTCTTGCCCAAGCGCCACCGGATCCGTCTATCGGAC
GAACAAGCGGCGGGTTTAGAGAAGCCGACGACCTTCGTGAAGGCGGTGATGAACACGCACCCGGCCACATACCGCGAGTT
TCTCCGCATCATATTCGACGAATACGGGAGGGACGGGTACGTACCTAGTGATCCATACATATATATAGTTCATTCATGGT
G-------TGGTGGTTAAAAAGTGGTTAACCAACTAATATTATGAGCTGTGGCTTGATGCATGGCTTGGATTCATGGCAG
GGTCGGCATCGCG------GAGGTGGCGTCGAGGGTGGGAGCGCTGTTCCGGGATAGGCCTGACCTCATCGCCGGCTTCA
ACGCCATATTGCCGAGAGAGCACAAGATCAAGGTCATCGGCGGGGTGGATGAGCATGAGCTTGCCGCTCGTTTCGTGAGA
GAAGTGAGCCTAGATGACCACGATGACGATAAGATCCACGATGGAT------AATATCTCTCACTATTGGTATACTATTA
TACTCCAGCAACGTGGAGCGAGCGTATATATTTTTCAAACTTCAAGCTTTGCATATTTCGGTAAGATCTGTTGAGAAAGT
ATCAACATCTACAATAC-AAATTTAACTAGTAGGGTATGCTCGATTTTGATGCATGTTATCACATTGATTCCAACCTAAA
TCAATGCAATTATCGATGAATGTTGTTAATATTGTAAAAAGTGTATCCTCACTCGCGCTCACCGTAACATGCTACTACCT
TTGTCTGTAAAGAAATATAAGATCGTCGTTTAGATCACTATTTTAGTGGTC-AAACGATCTTACATTTCTTTACAC--AG
AGTATTTTCTAATGTGAAACGATGCCTCCTGCACTCCGAGTCTCCCTCTCCCTTATCGCTTACCCCAGCCCTCGCAATAA
CGCCATTCCCTTGGTGA-ATTTTTAATTCTTGTTTCTCACGAACCATGTGCTGGTAGGTGTA----TAATTAAATAAAAG
CCGATGGTGCTTTCTAAA--GAAAAAGTCAATGCGTGGCTCACCCAACGCCTCACCACTCCGGGCCAGTGACATGTGGGT
CGTATTCATGCTAACATGCCAC-TGAGCACGAGATACAGCTGGATACGGAAGAAGTGACCGTATATGCAGGCATAGACAA
GTTATGTTACTGCAATATAATGCCGTATTTTGCAAGTTTTAGCACTAAACTAAATTGAACATCAGATACAGGTTCTATGA
CTGCCACTGATATTACCTTTTCATGTATTCATTAGTTTCGAAGCCGTCGACGTGAAGGACACAACAC-------------
--------------------AAATATATTTCTGTTCAAAATTTGGATTTGAGAAGAAAGAAGAAAACACGTCCATCAAAT
TCAAACCACCTGCACCCCTCGAACGGGAGAAAAATCTCATCTAGCGACCCTCCACATGCGATTATTTATTTTCCCACGTA
TCATGGGAAAACAAATACTAAGCACATCCAACAGCTCCCTCAATCC
>SNPs
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS---------------S-SS-SS--SSSS-
----------------------------SS----S---------SS---S------S--SS-SSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS----S--------------------------------------
--S---S-------------S----------------------------------S------------------------
------S-------------------------------------------------------------------------
------------------------------------S-------------------------------------------
---------------------------S-------------------S-------------------------S------
---SSS--------S-S--------------------SSSS------S--------------------S----S------
-SSSS--------------------SSSSS-S----SS--------------S------------------S--------
-----S--------------S-------------------------------------------------------S---
-------------SSS----------S------------------------------------S----------------
----------------------------------------------------------S---------------------
----------------------------------------------S---------------------------------
-----------------------------------------S--------------------------------------
-------------S------------------------------------------------------------S-----
----------------------------------------------SSSSSS-----------------S----------
--------------------------------------------------------------------------------
---------------------------------------------------------S----------------------
--------------------------------------------------S-----------------------------
---S----------------------------------S------------S----S------------------SSS--
-------------------------------------S-------------S---------------------S------
--------------------------------------------------------------SSSS--------------
-------------SSS-SSS----------------------S--------------------S--S------------S
----------------------S---------------S--S--------------------------------------
-----------S----SSSSSS-----------------------------------------S------------S-S-
-----------S------------------------------------S-------------------------------
---SS-----S------S--------------------------------------------------------------
------------------------S-S-------------------------------S---------------------
----------------------------------------------
>forward_216
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
------------------------------------CAACCCCTTGTTTGCCTTCG------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
----------------------------------------------
>reverse_1301
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------GACCTCATCGTCGGCTTCAA----------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
----------------------------------------------
>forward_693
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
---------------------------------AGAACGCTCGTACGGGTTTT---------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
----------------------------------------------
>reverse_1567
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
----------------------------------------------ATGTGGGTTCATGCATGGCT--------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
----------------------------------------------
>forward_753
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
-------------GGCCTGTGCTTTTGGTGTTC-----------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
----------------------------------------------
>reverse_2212
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
---------------------------------------------------ATTATCGCTTACCCCAGCCC---------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
----------------------------------------------
