>input_sequence_69178
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------------------CTATATATGTGCAGCGAATCCTCAGTTTTGTAC--------CTCAGACA-TTGACAAGAAAA
TAAGAAAAACAGAGGGCACGATACGAGCCAAAGCTTCCTTTCTTGTGTGCGTG--TTTTTGACTGACTTGACTATCGGTT
CTTGGGTGAAATCCATCGCGCAAGGCGATGCCCGAGACAGATGAGCAGAAGGTGGTCCGGCTGCAGGCACTTGTGGCGTT
TGGCAAGGCGGCGCACGCGGAAGCCATGCGCTACAGCGACATGGAGGAGGAGGAGGTGGTGGAGGAGTACCGGCGGGCGG
GCAAGCTGCACACCTATGACCAGGACAAGGAGTGGAAGAAGCGTTTTGCCAGGGTTGCCAAACTCCACCCGTGTCACTGG
GGCAAGCAAATGGTCGCAAAGATCGAAGAGTATATGTATTACCTTGAAGAAGACGAGGACGACTTCAAGATGGGGCTTTA
TTCATTATTAATCGATGATGAATCTTAGGTTAACTATGTGGGA----GTGTTGCCTAAGTTCGTATCTGTCAGATATGTT
TAG-CCGGTTAACTCATCTTTTAATGTTGTTGTTCTGCTTAATGGATGTTGTCATCGGCAGTGACATATGTGTGACTTCT
TCGTCAATCTTCAGATAGACACGTGCATTTCCTATACTCTA---------------------CTCTGTTTCTTAAAAACA
G---------CGATGCTTGATTGCAACAAACTGTTTTC--ATTTTATCCTCTGTAATATATGTGTTTCCACCGATTCTGC
TAAATTTAGATTGCATCCCACCTTTTTGTCCAATATTATTGA--------------------------------------
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>chr2B_1_TraesCS2B01G183800
GTGAAGAGCAGTGCGGCATGGTGGATTATATAGTCCTGATTCCTTGTGGCGCACGAGAAATTTCGACGTGAGGAGGGAGG
AGAATGCAGGTACGGAGAGGGAATGCTCTGCAGCTACTGAGTGAGGGAGGCAAATG--CTCCCGGCGGAAGAGAGAGACG
TTCGGGGGCAAAATTTTGGGTTCAAGGGGTTTGGGGCTTTGGGCCGTGAAAATCGAGAGGTGTGAGGGCTTTGCGT--AA
AAGAAAGATGAGGAAAACCACGGGCCGATGGGCCTTGCATAGTGGTTTTTTTTCTTCTT---------------------
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------------------------------------------------------------------------CTGAAAAT
TCGACAGCCGAAATGGTGGGCTTGCTTGGCCCGGGAACCGAGACTGACCTGCAGTAGGACGCCTCGTGCGCGTGCGATCT
TGGAGCTCCGACGCCGGGCACGCGGTGCGCACCGCCCTTCCTGGCCGCCGGAGTGGGCCGGGCGCGCTAGCCCCTGCAGG
AGGGGCCTTGCGGGAGCGCCGGACCTCCTCGGGCGCCGCCATCGGGGCCAGAGCCTCGCTTGCGCGCTGCCGCCGCCCTC
CCAGATCTGAAGCGCACGCCGTGCG----CGCCGCCTTTCCTCGACGGAGACGCCGGAACCTCACCGGACGACGATCTTC
GAAACAACGCCGGGGAGACCCAGTTCAGATGGGGAAGGCGACGACTTTTCCCACCGGGAGGGCAGTCGGGGCTGGCGGTG
GGGGTGGCCGGACAAGAGCGCCTCCATGGGTTGGCGGCCAGGCGCCGCAAAATTTCATGGTTAGATGGTAGGATGTGTGG
GCGGAAGGG---GACGACGCCAGGGAAAAAAATAGTCATCTGGGTTAAGTTGGCGGAAGGATACGGGCTTCGGTTTTTTA
TAGTCAGCTAGCTCGGTGGTGTCCGGATAAGTGTTGGCGTATTGCAC---------------------------------
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-------------------------------------------------------------------------------C
GCCCGTGTAGTTGTGTTTGTACCAGGCTGAGTCCGGGTTAGATTAGAGTTCATCTACGAGTCCGGGTCGGCCGGGGGCTG
GTCCGGGT--CTGCATGCCTATATATGTGCAGCGAATCCTCAGTTTTGTAC--------CTCAGACA-TTGACAAGAAAA
TAAGAAAAACAGAGGGCACGATACGAGCCAAAGCTTCCTTTCTTGTGTGCGTG--TTTTTGACTGACTTGACTATCGGTT
CTTGGGTGAAATCCATCGCGCAAGGCGATGCCCGAGACAGATGAGCAGAAGGTGGTCCGGCTGCAGGCACTTGTGGCGTT
TGGCAAGGCGGCGCACGCGGAAGCCATGCGCTACAGCGACATGGAGGAGGAGGAGGTGGTGGAGGAGTACCGGCGGGCGG
GCAAGCTGCACACCTATGACCAGGACAAGGAGTGGAAGAAGCGTTTTGCCAGGGTTGCCAAACTCCACCCGTGTCACTGG
GGCAAGCAAATGGTCGCAAAGATCGAAGAGTATATGTATTACCTTGAAGAAGACGAGGACGACTTCAAGATGGGGCTTTA
TTCATTATTAATCGATGATGAATCTTAGGTTAACTATGTGGGA----GTGTTGCCTAAGTTCGTATCTGTCAGATATGTT
TAG-CCGGTTAACTCATCTTTTAATGTTGTTGTTCTGCTTAATGGATGTTGTCATCGGCAGTGACATATGTGTGACTTCT
TCGTCAATCTTCAGATAGACACGTGCATTTCCTATACTCTA---------------------CTCTGTTTCTTAAAAACA
G---------CGATGCTTGATTGCAACAAACTGTTTTC--ATTTTATCCTCTGTAATATATGTGTTTCCACCGATTCTGC
TAAATTTAGATTGCATCCCACCTTTTTGTCCAATATTATTGAATAAAACTTGGATTCTCCGGATCGGCA-----------
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----------------------------------------------------GAAGAGAGTGGAGAAGAGAGAAAGGAAT
GGAGAAGCACGGGTGCTCAGGCCCGTTAAGAAGGAGGTCGTTGTCAGTGTCAAAACCGGTAGACCTTGGGAAGGGGGTTC
CGAACTGTGCGTCTGAGGATCGAAGGTAACAGGAGACGAAGGGGACATGATGTTTACCCAGGTTCGGACCCTCTTAATGG
AGGCAAAACCCTACATCCTGCTTGATTGTATTTGATGGGTATAGGGGTTACAAGAGTTGATCTACCTCGAGATCGTAATG
GCTAAACCCTAGATGTCTAGCCGATATGAATTCTGATAGCCTCTACGGACTAAACCCTCCGGTATATAGACACCGG-AGG
GGCCTAGGGTTGTATAGAGTCGGTTTACAGAAAAAGGAAAATACACCTCCGGACATTCAAACTTGCCATCCACGCAAAGG
AGAGTCCCATACGGACACGGGGGAAGGCCTTCTGCCTTGTATCTTCATGGCCTGTCGTGGAATTGTCACGTCAGATGTCC
TCGTGAAAGGACTTAGTTGTGGAGCCATCGCAACTAGGAAGCTTGAAGGGGTTAATCGGGACAAGGGACACGAGAGATTT
ATACTACTTCGGCCCCTTACGATGAAGGTAAG-GCCTACG-TCTAGTTGGGTTGGTATTGAT---GTTTTGATGACCAGG
GAGCGAGATACGCTATGCCCGGCTCTCGATGAGTTGTTTCTTTTCC-TAAGCCGCCAGCAGGTCGTCCCCTTATATACAC
GGGTTGACGCCCTGCGGCTTATAGAGTCCCA--GTCGGCTTATAAACAGTGTCCGGCTCGGTGACTAGTTAAATCTACCT
TATGATACAAGTCATGCCATTGCGGCGGTTTGTTACAACGGGCCTTAAGTCGCCTGTGGGCCTTAAGCCCTTTATTGAAC
CGCCATCTTCATGCTTGATCTTGGGCTTCTTTCTGGTGAGTCTTCTTTGCGTAACCCGGCCCCTCCTGGGCGGC
>chr2D_1
GTGAAGAGCAGTGCGGCATGGTGGATTATATAGTCCTGATTCCTTGTGGCGCACGAGAAATTTCGACGTGAGGAGGGATG
AGAATGCAGGTACGGAGAGGGAATGCCCTGCCGCTACTGAGTGAGGGAGGCAAATG--CTCCCGGCGGAAGAGAGAGACG
TTCGGGGGCAAAATTTTGGGTTCAATGGGTTTGGGGCTTTGGGCTGTGAAAATGGAGAGGTGTGGGGGCTTTGCGT--AA
A----AGATGAGGAAAACCACGGGCCGATGGGCCTTGCATAGTGGGG---------------------------------
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------------------------------------------------------------------TTTTTCCTGAAAAT
TCGACAGCCGAAATGGTGGGCTTGCTTGGCCCGGGAACCGAGACTGACCTGCAGTAGGACGCCTCGTGCGCGTGCGATCT
TGGAGCTCCGCCGCCGGGCACGCGGTGCGCACCGCCCTTCCTAGCCGCCGGAGTGGGTCGGGCGCGCTAGCCCCTGCAGG
AGGGACCTTGCGGGAGCGCCGGACCTGCTCGGGCGCCGCCATCGGGGCCAGAGCCTCGCTTGCGCGCTGCCGCCGCCCTC
CCAGATCTGAAGCGCACGCCGCCTTTCCTCGACGCCTGGACTCGACGGAGACGCCAGAACCTCACCGGACGACGATCTTC
GAAACAACGCCGGGGAGACCCAGTTCAGAGGGGGAAGGCGAGGACTTTTCCCACCGGGGGGGCAGTCGGGGCTGGCGGTG
GGGGTGGCCGGAGAAGAGCGCTTCCATGGGTTGGCGGCCAGGCGCCGCAAAATTTCATGGTTAGGTGGTAGGATGTGTGG
GCGGAAGGAGGAGACGACGCCAGGGAAGAGGGGA--------------------------------GCTTTGGTTTTTTA
TAGTCACAGC------------CCGGATAAGTGTTTGTA-----------------------------------------
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------------------GTATCAAGCTGAGTCCGGGTCAGATTAGAGTTCATCTACGAGTCCGGGTCGGCCGGGGGCTG
GTCCGGGT--CTGCA----TATATATGTGCAGCGAATCCTCAGTTTTGTAC--------CTCAGACATTTGACAAGAAAA
TAAGAAAAAAAGAGGGCACGATACGAGCCCAAGCTTCCTTTCTTGTGTGCTGTGTTTTTTGACTGACTTGACTATCGGTT
CTTGGGTGAAATCCATCGCGCAAGGTGATGCCCGAGACAGATGAGCAGAAGGTGGTCCGGCTGCAGGCACTGGTGGCGTT
TGGCAAGGCGGCGCACGCGGAAGCCATGCGCTACAGCGACATGGAGGAGGAGGAGGTGGTGGAGGAGTACCGGCGGGCGG
GCAAGCTGCACACCTATGACCAGGACAAGGAGTGGATGAAGCGTTTTGCCAGGGTTGCCAAACTCCACCCGTGCCCGTGG
GGCAAGCAAATGGTCGCAAAGATCGAAGAGTATATGTATTACCTTGAAGAAGACGAGGACGACTTCAAGATAGGGCTTTG
TTCATTATTAATCGATGATGAATCTTAGGTTAACTATGTGGGA----GTGTTGCCTAAGTTCGTATTTGTCAGATATGTT
TAGCCCGGTTAACTCATCTTTTAATGTTGTTGTTCTGCTTAATGGATGTTGTCATCGGCAGTGACATATGTGTGACTTCT
TCGTCAATCTTCAGATAGACACTGATAGGAAATGCACGTGTATGTGAACATATATCTCTACTCTGTGTTTCTTAAAAAGA
AATACTCTCACGATACTTGATTGCAACAAATTGTTTTC--ATTTTATCCCCTGTAATATATGTGCTTCCACCGATTCTGC
TAAATTTAGATTGCATCCCACCTTTCTGTCCAACATTATTGAATAAAATTTGGATTCCCCGGATCAGCA-----------
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----------------------------------------------------GAAGAGAGTGGAGAAGAGAGAAAGGAAT
GGAGAAGCACGGGCGCTCAGGGCCGTTAAGAAGGAGG-------------------------------------------
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>chr2A_1
GTGAAGAGCAGTGCGGCATGGCTGATTATATAGTCCTGATTCCTTGTGGCGCACGAGAAAATTCGACGTGAGGAGGGAGG
AGAATGCAGGTGCGGAGAGGGAATGCTCTGCAGCTAG-----GAGGGAGGCAATGATTCTCCCGGCGGAAGAGAGAGACG
TTCGGGGGCAAAATTTTGGGTTCAAGGGGTTTGGGGCCTTGGGCCGTGAAAATGGAGAGGTGTGGGGGCTTCGCGTAAAA
A----AGATGAGGAAAACCACGGCCCCGTATCCTTCGCGTAATATATACGCATTAATTATACCTCTTTATCATTCTCAAT
ATACTTCATTAAATATTCTAAGATACCTCAATATGAGTTTTATTAAAAAAATATCATCTACGACGTACTTTTTGTAATAT
ACCTTTTTCATGTACAAATACGTCTGTATATACGTAAACATTTAAAAAATGTAGACTCACATGAATTTTTTCATGAAACT
CATTTTGGAATATCTAATAATTCCTAGTGAAGTATATTAAAAATAATAAAGA----------------------------
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-----------------------GGTATAAAAAATTCATCTATGTGG-------------------------------TA
TATTAAGAGC------------GGGAATACGTACTCCTAGAAATACACAACTATTTTCCTATATATATATATATATATAT
ATATATATATATATATATATATATATATATATATATATATAAAGTCTATTAACAACCCAGGGTGAAGAATAAATAATTCT
TCACCCTGGTCGTTCCTACCCAGCCAGGCGGTCCGGCTCAAGCCTTACGTAGATTTATTTCCACACTGATGTAAAATTAC
GGCCGTATAGTTGTGTTTGTACCAAGCGAGT--CGGGTCAGATTAGAGTTCATCTACGAGTCCGGGTCGGCCGGGGGCTG
GTCCGGGTCTCTGCA----TATATATGTGCAGCGAATCCTCAGTTTTGTACAATTGTACCTCAGACATTTGACAAGAAAA
TAAGAAAAACAGAGGGCACGATACGAGCCCAAGCTTTCTTTCTCTCTCTTTTTTTAAAAAAAAATT-TTGAGCATCGGTT
ATTGGGTGAAATCCATCGTGCAAGGCGATGCCCGAGACAGATGAGGAGAAGGTGGTCCGGCTGCAGGCACTTGTGGCGTT
TGGCAAGGCGGCGCACCCGGAAGCCATGCGCTACAGCGACATGGAGGAGGAGGACGTGGTGGAGGAGTACCGGCGGGCGG
GCAAGCTGCACGCCTATGACCAGGACAAAGAGTGAAAGAAGCGTTTTGTCAGGGTTGCCAAACTCCACCCGTGCTCGTGG
GGCAAGCAAATGG------------------------------TTGAAGAAGACGAGGACGACTTCAAGATAGGGCTTTG
TTCATTATTAATCAATGATGAATCTTAGGTTAACTATGTCGGAGTGGGTGTTGCTTAAGTTCGTATTTGTCAGATATGTT
TAGCT-GGTTAACTCGTCTTTTAATGTTGTTGTTCTACTTAATGGATGTTGTCATCGGCAGTGACATATGTGTGACTTCT
TCGTCAATCTTCAGATAGACACTGATAGGAAATGCACGTGTATGTGAACATATATCTCTACTCTGTGTTTCTTAAAAAGA
AATACTCTCACGATACTTGATTGCAACAAACTGTTTTTTTATTTTATCCCCTATAATATATGTGCTTCCACTGATTCTGC
TAAAATTAGATTGCATCCCACCTTTCTGTCCAACATTATTGGATAAAACTTGGATTCCCCGGATCAGCAGAAGAGAGTGG
ATCCGGCTTGCCTGCTCCCTCCGCATGCTCCCATCCGTGCTCCCACTTCATTCTACGGCTGTTCTTTTTTCCTTTTCCCT
TTCTAATTTAATCATCTCCCCCCTGATTTTAAGGGGGTGGGGCCGAGCCTTATTTTGTTCCAATCAAATCAAGCCACGTA
TGCGGGAGCACAGATGGGAGCACGCGCAGGGAGCAGGCAAGTATCGTCGTCCGAAGAGAGTGGAGAAGAGAGAAAGGAAT
GGAGAAGCACGGGCGCTCAGGGCCGTTAAGAAGGAGG-------------------------------------------
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>chr5D_1873
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-----------------------------------------TGTCGGTGTCAAAACCGGCCGATCTCGGGTAGGGGGTCC
CGAACTGTGCGTCTGAGGATCGAAGGTAACAGGAGACAAAGGGGACACGATGTTTACCCAGGTTCGGGCCGTCTTAATGG
AGGTAATACCCTACTTCCTGCTTGATTGACCTTGATAAGTATAGGGGTTACAAGAGTTGATCTACCTCGAGATCGTAATG
GCTAAACCCTAGATGTCTAGCTTATATGAATTCTGATAGCCTCTACGGACTAAACCCTCCGGTTTATATGGACACGAAGG
GGCCTAGGGTTGTATAGAGTCGGTTTACAGAGAAATGAAATCGTACATCCGGATGC-CAAACTTGCCATCCACACAAAGG
AGAGTCACATCCGGACACGGGGGAAGGCCTTCTATCTTGTATCTTCACAGCCTGTCGTGGTTTTGTCACGACAAATGTCC
TAGAGAAAGGACTTAGTCGTGGAGCCATCGCTACGGGTTAGCTTAAAGGGGTTAAAGCGGACAAGGGACACCGAGAGTTT
ATACTGGTTCGGCCCCTTGCGGTGAAGGTAAAAGCCTACGATCCAGTTGTTGTGGGATTGCTTGGGTTTCGATGACCAGG
GAGCGA-ATACGCTTTGCCTGAGTCTCGAGTTGTTGTCTGTTGTCCCTAAACCGCCGTCGGGTCGTCCCCTTATATACAT
GGGTTGACGCCCGTCGGTTTACAGAATCCCGAGGCCGGCTTATAAAC-GTGTCCGGCTCGGT------------------
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>chr1B_2275
TCATTGGA------------------------------------------------------------------------
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--------------------------------------------------CCTGTCGTGGAATTGTCACGTCAGATGTCC
TCGTGAAAGGACTTAGTTGTGGAGCCATCGCAACTAGGAAGCTTGAAGGGGTTAATCGGGACAAAGGACACGAGAGGTTT
ATACTAGTTCGGCCCCTTACGGTGAAGGTAAG-GCCTACG-TCTAGTTGGGTTGGTATTGAT---GTTTCGATGACCGGG
GAGCGAGATACGCTATGCCCGGCTCTCGATGAGTTGTTTCTTTCCC-TAAGCCGCCAGCAGGTCGTCCCCTTATATACAC
GGGTTGACGCCCTGTGGCTTACAGAGTCCCG--GCCGGCTTATAAATAGTGTCCGGCTCGGTGACTAGTTAAATCTACCT
TATGATACAAGTCATGCCATTATGGCGGTTTACTACAATGGGCCTTAAGTCGCCTGTGGGCCTTAAGCCCTTTATTGAAC
CGCCATCTTCATGCTTGGTCTTGGGCTTCTTTCTGGTAAGTCTTCTTTGCGTAACCCGGCCCCTCCTGGGC---
>SNPs
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-----------------------------------------------------S----------S---------------
-SSSS----------------------------------------S-SSSSS-SSSS-S---------------------
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----------S-------------------------------S--------------S----------------------
----S---------------------S-----------------------------------------------------
---------------------SSSS------S-----SSS---------------S------------------------
-----------------------------S-----------S----------------S---------------------
------------S--------S------------------------------------------S---------------
--------S------------------S----S-S------SS--SSSSSSSSSSSSSSSSSSSSS----S---------
-------SSSSSSSSSSSSSSS-------------S-SSS-SSSSSS---------------------------------
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-S----S-----------------S-------------S-----------------------------------------
---------------SSSS-------------------------------------------------------------
-----------------------------S--------------------S-S---------------------------
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-------------------------------------------------------------------------S-SS---
-----------------------------------------------------------------------S-------S
------------------------------------------------------------------S-------------
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----------------------SSSS-SSSSS-SS--SSSS-----------------------S-------------S-
S-------------S----------------------------------S--------------S---------------
-------------------------S-------S-----------------------S-------S--------------
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-------------S-------S---------------SSSS----S-------------SS--S--S---S-------S-
-------------------------------------S---------S-------------------S--S---------
---S--S-------S-------------SSS-----SS------------------------------------------
---------------------SS----------------------------------------S----SSS--SS-----
-------------------------------S---S----SSSS--S------SSSS----------------S------
------S---S----------------------SS------------SS-------------------------------
----------------------------------------------------------------------------S---
------S--------------S-----------------------------------------------S----------
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---------------------S--------S---S---------------------------------------------
---------------------SS--------SS-----S-----------------------------------------
-----------------S-------------------S---------------------------------SSS
>forward_1060
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TAGTCAGCTAGCTCGGTGGT------------------------------------------------------------
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>reverse_2494
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-------------TGCTCAGGCCCGTTAAGAAG-----------------------------------------------
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