>input_sequence_69177
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-----------------------GTGGGGAACTGTCAGGCGGCGGACGCGGCGGCCGTGGTGATCCAGCACCCGGGCGAC
GGCAAGGTGGAGCGCCTCCACTGGCCGGCCACCGCGGCGGACGTCATGCGCAGGAACCCCGGCCACTACGTCGCGCTTGT
CCTCCTCCATCACGACTCTC---GA---GGAGTTGACCCCGACCCCGCCGTCCCCGGAGGAGGAGGAGGTGCCAGGATAA
CCAAGGTGAAGCTCCTCAAGCCCAGGGACACGCTCCACCTCGGCCAGGTCTACCGCCTCATCACCTCCCAAGGTTCGTGC
-----------CC-----------------------------------------GTTCTTGGATTGGCTTCCTTT--CGC
TTCTTGTCCCGTTCGCTCTGTTACCTGCATAGAGAT------T----AATCGT----TCCGTT--------GTGCGTGCA
GAGGTGAGCAAGGCCGTGCAGACGAGGAAGCAGGAGAGGATGCGCGGTTGCGACGAGGCGATCGAGCAGGAGCGGCCGCG
ACTGCACCGGCGGCGGCAACCGCCGAGGCCGAGAGGTGGCAACGCAGCCACAGAA---ACCAACGGCGAACTGAGGCAGC
CCGCCGATCACCAGGTAATCGATGGCACGCTCGCCTCACCTACGAGCTCGATCCATCATCGCAATCGCAGCCACTCATCT
GCCCT---CTCTGCTTCGTCCAGGAACGGAAGCGGATGGAGAAGGACCGGCACGACCGGAGCATGACCGCCGCACGC---
---------GGCAGAGGCCGGCACTGGCGGCCGGCGTTGCAGAGCATTACAGAGTCGTCATCGAGCGGGCACGCCGACTC
CGGGGATATATGTAAATGA-------------------------------------------------------------
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------------
>chr2A_1_TraesCS2A01G084600
GCCCAGCTCCGCCCATGATGTCCCGGTACCACGCATGTGTACCCCGTGCC-------TTGTTATCACCACATGGCGAGGA
GCTCATGGCGCATACGGCCATTCCTAAATGCCCTCACCATTTCAAAAATACATTGCATATTAATTTTGTCCCAAGTCAAA
CTTTGTATACTCTGACATGTTTGTTGAAAGAATATTAATATCCATAATAGGAATAGATACCTTATAAAAATATATTCTAT
GATGCATCTAATGATATTACTTGTCATGGATGTTGACTTTTTTCTTCTACCTCTTCAGTAAACTTAGTCAAACTTTATGA
AGATTGAATTGAGACAAAACGAAGATACAACATATTTTCAAATAGTTAGTGTAGTATTTTTTTTTGGCCAATTCTTAGAG
CATTTATAAAGTGGTTGTTAGGGGAATCCCTTTTTCTTGCAAAGAAATGAGCAGATCTATTATAAAGGTTCATAGAAAAT
ACAAGACACTTTAAACATAATAAAAATTACATCGAGTACATTGTCCTCCCAGAGATT-----------------------
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AAACAGACATGTTTATGAAACATATG---GACCCAGTACTTATCAAACAAAAACCCACAAGCTGCCCTCAAATATATGTA
AGTTTACATGTGACGACTCTTTCATG-----GTCCAGTTGGTATAACTGCCCGCAGCCTGCAGAGCGTTGTCGA----CA
TATGGCGC-------------------AAGAAGAGATGAAATCTACTATGTTTTT-------------------------
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------------------------TTAAAAAAA--------------------------------AAATCTACTATGTTC
T----------TCCTCTGTTCCATCCGGCCGACCAATTTTCTACGAACCCTGATGAATTAATCAACGAGCG----TTGAT
TGACCCCTTCG-TTTACCACCTCGCAACAAACAACATCGCACGTCCACAAGTAGATTAAAAAT----GGCTTCCTTTACC
ACCTCGCTA-----ATCACACTCCTCTCCCTCTCGTCTCGGCTCCCCCATATAATCCCAACCACG-CCCCGTCCTTCTCA
TCTCATCAGAATCCAGAGTCCGCACGCGAGAACTCAAACCGA--------------------------------------
----------------------------------------------C---------------------------------
-------------------GGACGTGGGGAACTGTCAGGCGGCGGACGCGGCGGCCGTGGTGATCCAGCACCCGGGCGAC
GGCAAGGTGGAGCGCCTCCACTGGCCGGCCACCGCGGCGGACGTCATGCGCAGGAACCCCGGCCACTACGTCGCGCTTGT
CCTCCTCCATCACGACTCTC---GA---GGAGTTGACCCCGACCCCGCCGTCCCCGGAGGAGGAGGAGGTGCCAGGATAA
CCAAGGTGAAGCTCCTCAAGCCCAGGGACACGCTCCACCTCGGCCAGGTCTACCGCCTCATCACCTCCCAAGGTTCGTGC
-----------CC-----------------------------------------GTTCTTGGATTGGCTTCCTTT--CGC
TTCTTGTCCCGTTCGCTCTGTTACCTGCATAGAGAT------T----AATCGT----TCCGTT--------GTGCGTGCA
GAGGTGAGCAAGGCCGTGCAGACGAGGAAGCAGGAGAGGATGCGCGGTTGCGACGAGGCGATCGAGCAGGAGCGGCCGCG
ACTGCACCGGCGGCGGCAACCGCCGAGGCCGAGAGGTGGCAACGCAGCCACAGAA---ACCAACGGCGAACTGAGGCAGC
CCGCCGATCACCAGGTAATCGATGGCACGCTCGCCTCACCTACGAGCTCGATCCATCATCGCAATCGCAGCCACTCATCT
GCCCT---CTCTGCTTCGTCCAGGAACGGAAGCGGATGGAGAAGGACCGGCACGACCGGAGCATGACCGCCGCACGC---
---------GGCAGAGGCCGGCACTGGCGGCCGGCGTTGCAGAGCATTACAGAGTCGTCATCGAGCGGGCACGCCGACTC
CGGGGATATATGTAAATGAACT--------------------------ACTAGAAAACTAGAAGAAGGTTTGGGG-GAGC
----TTGAA-------------ATGTACTACATACATTAGGCGATCTGATTGTATCC-ATCGGTTTC-------TTTGAA
TCCGTTTTGGTGATACAGTAGCATGCATTGCCCATTCCGTATCTTTTG-----CGAAGATTGCTTGTTCCTGTCTTGAGG
AT--AGCGGTTTATCCAAGTCCTACGTGTTATTCGCAGTGGTGCGGAGGACAGGCGTGTGCTCCTTATGTTTGTATCTTC
TTTTGATTGCGGCATTA---------------------------------------------------------------
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-----------------GAGTCAATGAAAAACGACATTTAACCAAAAAAACCCGGTGATT--------------------
------------GACCGAAAAAGGCGTTGTCACATAGTGCTCGCCGCTTGCGCATTCAGTTTCAATTTTCAGTTCTGACC
ATTTCAAATTCGATGGT------------------ATACATTTCTAAGGGAGGTCATGATCGAT----GAAACAGCAGTA
GTTACGCTCATGTGAGTGAATGGCGAGACCTCCTGGTCAATGGTTAACAAAAAACAGTGATTTGTTAATTTAAAATTGCA
AAGCCTCGAAATTCGCTCTCCGCAGCTATTTGAATATACTAGCAAGTCTCCATTGAAACTTGTACCACCAGCTCCAGCAT
ATTGAATATATGAATGTAGTAGCGAGTCTCCATTCAATATTTTTTTCGTTTGTTTTGACAAGACGCAATTAATACACTTT
GACTACCTACACTAGTTGTTGGGGCGCCACCCGGTGGCGCCGCCTGAGACGAAGTTGGGGCAATGCCAGGTTGGGAAGTG
CCCTTTCCAATTTCTTGTTTGTACCAAGGTGTGTTATTCCATCACACTCAAAATACATGCATATTTAGTACTGGTACGTG
CAAGTATGTAAAACTTTAAGATATAGATATGCAAAATCAACACGCTTAGAGAATGTATTCTTAAAGGTTACATGACATCC
TCTGATAACTGGGAGATGGGGAAGCCATGCAGCTCAGTGATGCACACTCGATCGATCTGTTAAAGACGGTGGACGTCGAT
GGCAACATGGTG
>chr2D_2
CCCT-GCTCCGCCCATGATGTCACGGTGCCACACATGTGTACCCCGTGCCTTCACCTTTGTTATCACCACATGGTGAGGA
GCTCATGACGCATAGGGCCATTCCTAAATACTCTCACCATTTCAAAAATACATTGCATATTAATTTTGTCACATGTCAAA
CTTTGTATAGTCTGACATGTTTGTTGAAAGAATATTAATATCCATAATAGGAATATATACCTTATAAAAATATATTCTAT
GATACATCTAATGATATTACTTGTCATGGATGTTGACTTTTTTCTCCTTCTTCTTGAGTAAATTTAGTCAAACTTTATGA
AGATTGAATTGAGACAAAATGAATATACAATATATTTTGAAATAATTAGTG-----------------------------
--------------TTGTTAGGGGAATCTCTTTTTGTTAAAAAAAAGACG--AGATCTATTATAAAGGTTCATAAAAAGT
ACATGTTTATGAAACTCTGCGACCCACAGAG-------------------ATTAAGAGGGTGTTTGGTTCAGGGACTTTT
TAGTCCCAGAGACTAGAAAAAATCCCTAAAAAGTCCCTAGGAACCAAACGGGAGGGACTTTTTCTACAGGGACTAGAAAA
AGACTCTACTAAAGAGTCTTTTTTGATTAGTCCCTGGGACTAGAAAAAGTCCTAGAAATTCTGAACCAAACACCCCCTGA
ACAGAGACATGTTTATGAGACACATG---GACCCGGTACTTATGAAACAAAAAACC-CAAGCTGCCCTCAAATATATGCA
AGTTTACATGTGACGACTCTTTCATG-----GTCCAGCTGGTATAACTGCCCGCAGCCTGCAGAGCATTGTCGA----CA
TATGGCGC-------------------AAGAAGAGACTAAATTTA-----------------------------------
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---CTCTGTCCCA------------CGGCCGGCAAATTTTCTACGACCC-TAATAAATTAATCAACGAGCG----TTGAT
TGACCCCTTCG-TTTATCACCTCGCAACAACCAACATCACACGTCCACAAGTAGATTAAAAATGGCAGGCTTCGTTTACC
ACCTCGCTA-----ATCACAGTACTCCTCTC--CCTCTCGGCTCCCCCATATAATCCCAACCCCG-CCCGTC------CT
TCTCGTCAGAATCCAAATTAGTCACGCGACAAACTCCGGCAGCCGCCGCGCGCGCGCCACCGAGCAACGGGCCGATAAGC
TAGCTAGCCGCCGGCGGCCTCCGCGGTACAGGAATCAACGCGCGTCC---------------------------------
-------------------GGGCATGGGGAACTGCCAGGCGGCGGACGCGGCGGCCGTGGTGATCCAGCACCCGGGTGAC
GGCAAGGTCGAGCGCCTCCACTGGCCGGCCACCGCGGCGGACGTCATGCGCAGGAACCCCGGCCACTACGTCGCGCTCGT
CGTCCTCCATCACGTCTCTG---GC---GGCGTTGACCCCGACCCCGCCGTTGTCGGAGAAGGAGGAGGTGCCAGGATAA
CCAAGGTGAAGCTCCTCAAGCCCCGGGAGACGCTCCACCTCGGCCAGGTCTACCGCCTCATCACCTCCCAAGGTCAGTCA
GTGCCTGATATTC--------------------TGAATCCGCCA--------------TTGGATTGGGTTCCTTT--CGC
TTCTTCTCCGGTTCCCTCTTTTACTCACA--------GAGATTAATCAGTCGATCAAT---TT--------GTGCGTGCA
GAGGTGAGCAAGGCCGTGCAGACGAGGAGGCAGGAGAGGAGGCGCGGCTGCGACGAGGCGACCGAGCAGGAGCGGCCGCG
GCTGCACCGGCGGCGGCAGCCGCCGAGGCCGAGAGGCGACAACCCAACCACCA---CAGCCAGCGGAGAACAGAGGCAGC
CCGCCGATCACCAGG-----------------------------------------------------------------
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>chr2B_517
TCCT----------------------------------------------------------------------------
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-----------------------CCACATAG-------------------ATTGAAC-----------------------
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ACAGAGACATATTTTTGAAACACATAGTAGACCCCGTATTTATTAAACAAAAACCTACGAGCTGCCCTCAAATATAT---
-------ATGTGACGACCCTTTCACA-----GTACAGTTGGTAGAGCTGCCCGCAGCCTGCAGAGCATTGTCGA----CA
TATGGCGCGTCCACGACATGCGTGCGCAAGAAGACAAGCACGATCCCTATGCCG--------------------------
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-------------------------------------------------------------------------------C
TTCCACTGTGCCG------GCCATT-----------TTTTCTACGGTCCCTAAACAATCAATTAACAAGTTGATCTTGAT
TGACTCCTTCG-TTTATCACGTCGCAACAACCAGCATCGCACGTCCACAAGTAGATTTAAAAT----TGGTT--------
-CCTCGCTA-----ATCACACTCCTCTCCCTCTCGTCTCGGCTCCCCCATAAAACACCAACCCCAACCCGTC------CT
TCTCAACAGAATTCAGAATCCAGACGCGAGAGCTCACAAAGA--------------------------------------
----------------------------------------------CTCGGGCAGCTGTCGGCGATCTCTGTGGTACAGG
GGCACGTGAGACGT-----GGGCATGGGGAACTGCCAGGCGGCGGACGCGGCGGCCGTGGTGATCCAGCACCCGGGCGAC
GGCAAGGTCGAGCGCCTTCACTGGCCGACCACCGCGGCGGACGTCATGCGCAGGAACCCCGGCCACTACGTCGCCCTCGT
CGTCCTGCATCACGTCGAAGCC------------GAGCCCGAGCCCGCCGTCGCCGGAGAAAGAGGAGGTGCCAGGATAA
CCAAGATCAAGCTCCTCAAGCCAAAGGACACTCTCCTCCTCGGCCAGGTCTACCGCGTCATCACCTCCCAAGGTTCGTGC
-----------CAAATTAGCAGTATCCCGGTGAAT------CCA-------CCAGTTCTTGGATTGGATTCCTTT--CGC
TTCTTGTCCGGTTCGCTCTGTTACTTGCATAGAGAT------TAA----TCGT----TCCGTT----GTGCGTGCGTGCA
GAGGTGACCAAGGCCGTGCAGACGAGGAAGCAGGAGAGGATGCGCAGCTGCGACGAGGCCATCGAGCAGGAGCGGCCGCG
GCTGCACCGCCGGCGGCAACCGCCGAGACCGAGGGGCGACGACGCGGCCACCA---CAGCCAACGGAGAACAGAGACAGC
CCGCCGATCACCAGGTAATTGATAGCACGCTCGCCTGCGAACTC------ATCCATCATGGCAATCGCAGCAACTCATCT
GTCCACCCCTCTTCTTGGTTCAGGAACGGAAGCGGCTGGAGAAGGATCCGCGCCACCGGAGCATCGCCGCCGCCCGC---
---------GGCAGAGGCCGGCACTGGCGGCCGGCGCTGCAGAGCATTACAGAGTCATCGTGGAGCGGACACACAGACTG
CGAGGATACATTAAAGAGACTCTACATGTAAACGAACTAGAGGTCTAGAGTAGAAAAGTAGAAGAAGGTTTTGGGAGAGC
AGTGTAGAA-------------ATGTA-TACATACATTAGGCGATCTGAATGTATTC-ATCGGCTTCAGTCCAGTCTGAA
TCCGTTTTGGTGATACAGTAGCA---------------------------------------------------------
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>chr2B_537
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------ACATGTTTATGAAACACATG---GACCCAGTACTTATCAAACAAAAGCCCGCAAGCTGCCCCAA----------
-------ATATGACGACTCTTTCATG-----GTCCAGTTGGTATAACTGCCCGCAGCCTGCAGAGCCTTGTCGA----CA
TATGGCGC-------------------AAGAAGAGATTAAAGCCCTGTTTAGTTCATAAGTCCTAAGACTTTTTTTAGTC
CCAACTTATAAGTTATAAGTTCCTAAAAAGTCCCTACCTGTTTGGTTCCTGAGACTTAATATGGACTAAAAGACCATATT
ATAACTATAAGTCCCTATAAGACTCTCTTTAAGAGTCTTATTTTATAAGTCCAAATGCCTAATTTAAGTCCTTATAAGTC
TCTTCTGTTTGGTTTAGATGGAACTTAAAAAAACTCTTTTAAATCCCTGTAACCAAACACCCTCTAAATCTACTCTGTTC
TTCCTCTGTTCCA------TCCATCCGGCCGGCCAATTTTCTACGAACCCTAATAAACTAATCAACGA--G----TTGAT
TGACCCCTTCG-TTTATCACCTCGCAACAACCAACATCGCACGTCCACAAGCAGATTAAAAAT----GGCTTCGTTTACC
ACCTCGCTA-----ATCACACTCCTCTCCCTCTCGTCTCGGCTCCCCCATATAATCCCAACC------CCGTCCTTCTCA
TCTCATCAGAATCTAGAGTCCAGACGCGAGAACTCACACCGA--------------------------------------
----------------------------------------------C---------------------------------
-------------------GGACATGGGGAACTGCCAGGCGGCGGACGCGGCGGCCGTGGTGATCCAGCACCCGGGCGAC
GGCAAGGTGGAGCGCCTCCACTGGCCGGCCACCGCGGCGGACGTCATGCGCAGGAACCCCGGCCACTACGTCGCCCTCGT
CGTCCTCCATCACGTCTCTG---GCGGCGGCGTTGACCCCGACCCCGCCGTCGCCGGAGAAGGAGCAGGTGCCAGGATAA
CCAAGGTGAAGCTCCTCAAGCCCCGGGACACGCTCCACCTCGGCCAGGTCTACCGCCTCATCACCTCCCAAGGTCCGCCA
GTGCCTGAGATTC--------------------CGAATCCGCCA--------------TTGGAATGGATCCCTTT--CGC
TTCTTGTTCGGTCCCCTCTCTTACACGCA--------GAGATTAACCAATCGATCAATGTGT---------GCGTGTGCA
GAGGTGACCAAGGCCGTGCAGACGAGGAGGCAGGAGAGGACGCGCGGCTTCGACGAGGCGACCGAGCAGGAGCGGCCGCG
GCTGCACCGGCGGCGGCAACCGCCGAGGCCGAGGAGCGACAACGCAGCCACGGAA---ACCAACGGAGAACAGAGGCAGC
CCGCCGATCATCAGG-----------------------------------------------------------------
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>chr2D_600
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------------------------------------------------------------------------TATACTTA
AGTTTACATCTGACGACTCTTTCACAGTAG-----AGTTGTTAGAACTGCCCGCAGCCTGCAGAGCATTGTCGA----CA
TATGGCACGTCCACGACATGCCTGCACAAGAAGAGATTAAATATG-----------------------------------
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---CTCTGTTCTCCACTGTTCCATCCGGCCGGCCAATTTTCTACGAACCCTAATAGATTAATCAACGA--G----TTGAT
TGACGCCTTCG-TTAATCACCTCGCAACAATCAGCATCACACGTCCACAAGTAGATTTAAAAT----GGGTTCGTTTACC
ACCTCGCTAATCACATCACACTCCTCTCCCTCTCGTCTCGGCTCCCCCATAAAACACCAACCCCAACCCGTC------CT
TCTCAT-----TTCAGAGTCCAGACGCAAGAGCTCACGGCGT--------------------------------------
----------------------------------------------CTCGGGAAGCCGCCGCCGATCTCTGTGGTACATG
AGCACGTGAGTACGTGACGGGGCATGGGGAACTGCCAGGCGGCGGACGCGGCGGCGGTGGTGATCCAGCACCCGGGCGAC
GGCAAGGTCGAGCGCCTCCACTGGCCGGCCACCGCGGCGGACGTCATGCGCAGGAACCCCGGCCACTACGTCGCCCTCGT
CGTCCTACATCACGACTCTG---GC---GGAGTTGACCCCGCCGTCGCCGA------------AGAAGGTGCCAGAATAA
CCAAGGTGAAGCTGCTCAAGCCCAGGGACACGCTCCTCCTCGGCCAGGTCTACCGCCTCATCACGTCCCAAGGTTCGTGC
-----------TC--------------------TGCATCCGCCA-------ACCATTCTTGGATTGGATTCTATT--TGC
TGCTCGTGCAGTTCTCTCTCTCTTGCTTGC----ATGGAGATTAATCAATCAT-CAATCCGTG----GCGCGTGCGTGCA
GAGGTGAGCAAGGCCGTGCAGACGAGGAGGCAGGAGAGGATGCGCGGCTGCGACGAGGCGATCGAGCAGGAGAGGCCGCG
GCTGCACCGGCGGCGGCAACCGCCGAGGCCGAGGGGCGACGACCCAGCGACG---GCCGCCAGAGGCGAACAGAGGCAAC
CCGCCGATCATCAGG-----------------------------------------------------------------
------------------------AACGGAAGCGGCTGGAGACGGACCGGCAACAGCGGAGCATCGCCCCCGCCCGC---
---------GGCAGAGGCCGGCACTGGCGGCCGGCGTTGCAGAGCATTACAGAGGCGTCGTCGAGCGGACACGTCTCTGT
T-------------AACGAACT--------------------------AGTAGAAAACTAGAAGAAGGTTAGGGG-GAGC
----TAGCGAGAAATGTCGTACAT----G---TACATTAGGCGATCTGAATGTATCC-ATCGGCTTCTGTCCTGTTTGAA
TCCGTTTTGGTGATACAGTAGCACGCATTACCTCCTT--TTTTTTGGG-----TGAAAATTACCCGTTCCTCCTTCGAGG
ATCTAGCGGTTTATCCAAGCCACACGTGTAATTTCCAGTAGTGC------------------------------------
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>chr2A_606
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------------------------------------------------------------------------------TA
AGTTTACATGTGACGACTCTTTCATAGTCCAGTCCAGTTGGTAGAACTGCCCGCGGCCTGCAGAGCATTGTCACCATGCA
TATGGCGCGCCCACGACATGCCTGCCCAACAAGAGGTTACATATG-----------------------------------
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---CTCTGTTCCA------TCCATCCGGCCGGCCAATTTTCTACGAACCCTAATTAACTAATCAACCAGCG----TTGGT
TGACTCCTTCGTTTTATCACCTCGCAACAGCCAACATCGCACGTCCACAAGCAGATTAAAAAT----GGCTTCCTTTACC
ACCTCGCTA-----ATCACACTCCTCTCCCTCTCGTCTCGGCTCCCCCATATAATCCCAACCACG-CCCCGTCCTTCTCG
TCTCATCAGAATCCAGAGTCCGCACGCGAGAACTCACACCGA--------------------------------------
----------------------------------------------C---------------------------------
-------------------GGACATGGGGAACTGCCAGGCGGCGGACGCGGCGGCCGTGGTGATCCAGCACCCGGGCGAC
GGCAAGGTGGAGCGCCTCCACTGGCCGGCCACCGCGGCGGACGTCATGCGCAGGAACCCCGGCCACTACGTCGCGCTCGT
CCTCCTCCATCACGTCTCTGCCGGCGGCGGCGTTGACCCAGACCCAGCAGTCGCCGGAGAAGGAGGAGATGCCAGGATAA
CCAAGGTGAAGCTCCTCAAGCCGAGGGACACGCTCCACCTCGGCCAGGTCTACCGCCTAATCACCTCCCAAGGTTCGTGC
-----------CC--------------------TGCATCCGCCA-------ACGGTTCTTGGATTGGATTCTTTT---GC
GTCCTGTCCGGTTCCCTCTCTTTCTTACATGGAGATGGAGATTAACCAATCGATCGA-CCGTG----GCGCGTGCGTGCA
GAGGTGACCAAGGCCGTGCAGACGAGGAGGCAGGAGAGGACGCGCGGTTGCGACGAGGCGATCGAGCAGAAGCGGCCGCG
GCTGCACCGGCGCCGGCAGCCGCCGAGGCCGAGAGGCGACAACGCGGCCAC-----------------------------
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>chr2A_881
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-CCTCGCTA-----ACCCCACACCTCTCCCTCTCGTCCCGGCACCCCCATATAACCCACTCT--------GTCCTTCTCA
TCTCATCAGAATCCAGAGTCCAGGCGCGAGAGCCCACACCGA--------------------------------------
----------------------------------------------C---------------------------------
-------------------GGACATGGGGAACTGCCAAGCGGCGGACGCGGCGGCCGTGGTGATCCAGCACCCGGGCGAC
GGCAAGGTGGAACGCCTCCACTGGCCGACCACCGCGGCGGACGTCATGCGCAGGAACCCCGGCCACTACGTCGCCCTCGT
CGTCCTGCACCATGCCGACACC------------GAGCCCGGCCCCGCCGTCGCCGGAGAAAGAGGAGGTGCCAGGATAA
CCAAGATCAAGCTCCTCAAGCCAAGGGACACGCTCCTCCTCGGCCAGGTCTACCGCCTCATCACCTCCCAAGGTTCGTGC
-----------CTGATGA--------------------------ACCAAAGACGGTTCTTGGATTGGATTCTTTC--CCC
TTCTTGTCAGGTCCCCTCTCTTGCTTCCATGGAGTT------TAACCAATTAT----TCCGTG--------GCGCGTACA
GAGGTGACCAAGGCCGTGCAGACGAGGAAGCAGGAGAGGATGCGTGGCTGCGACGAGGCCGTCGAGCGGGGGCGGCCGCG
GTTGCACCGGCGACGGCAACTGCCGAGGCCGAGGGGCGACGACCCAACCACGGCC---ACCAGAGGCGAACAGAGGCAGC
CCGCCGATCATCAGG-----------------------------------------------------------------
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>chr2D_907
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--------------------------------TCCTCTCGGCT-CCCCATATAATTCCAACCCCG-CCCGTC------CT
TCTCATCAGAATCCAGAGTCCACACGCGAGAACTCACACCGA--------------------------------------
----------------------------------------------C---------------------------------
-------------------GGACATGGGGAACTGCCAGGCAGCGGACGCGGCGGCCGTGGTGATCCAGCACCCGGGCGAC
GGCAAGGTGGAGCGCCTCCACTGGCCGGCCACCGCGGCGGACGTCATGCGCAGGAACCCCGGCCACTACGTCGCCCTCGT
CGTCCTGCATCACGTCGACTCC------------GAGCCCGGCCCCGCCGTCGCCGGAGAACGTGGAGGTGCCAGGATAA
CCAAGATCAAGCTCCTCAAGCCGAAGGACACGCTCCTCCTCGGCCAGGTCTACCGTCTCATCACCTCCCAAGGTTCGTGC
-----------CTAATTAGTACTATTATCCTGATGAATCCGCCGACCAAGGACGGTTCTTGGATTGGATTCCATTCGCGC
TTCTTGTCCGGTTCCCTCTGTTGCTTACATGGAGAT------TAA----TCGACCAATCCGTG----GTGCATGCGTGCA
GAGGTGACCAAGGCCGTGCAGACGAGGAAGCAGGAGAGGATGCGCGGCTGCGACGAGGCCATCGAGCAGCAGCGGCCGCG
GCTTCACCGGCGGCGGCACCTGCCAAGGCTGACGGGCGACGACGCGGCCACGGCC---GCCAGCGGAGAACAGAGGCAGC
CTGCCGACCATCAGG-----------------------------------------------------------------
------------------------AACGGAAGCGGCTGGAGAAGGACCGGCACCACCGGAGCATCACCGCCGCCCCCGGC
AGAGGCAGAGGCAGAGGCGGGCACTGGCGGCCGGCGCTGCAGAGCATCACAGAGTCGTCGTCGAGCGGACACACCGACTG
CGAGGATACACGTAAATGAACTAC-------------------------GTAGAAAAGTAGAACAAGGTATTGGGCGAGC
----TAGAA-------------AT----G---TACATTAGGCGATCTGAATGTATCCCATCGGCTTCTGTCCCGCTTGAA
TCCGTTTTGGTGATACAGTAGCATGCATTGCCCGTTC--TTATTTTTTTCTTCTGAAGATTACCCGTTCGTGTCTGGAGG
ATCTACTGTTTTATCTAAGCCGCACGTGTTATTCCCAGTAGCGCCGAGGATAGATACATGCTAGCTGTGTTTGTATCCTC
TATCGCCCTCCCGCGTCGCCCTCCCGCTAGGGCGGCTCGGGTGGAAACCCTAGCCCCCGTCGCCAGGCACGTCCATCCTC
CCCCTCCCCTCCGCCGCCGCTAGAGGAGGTCGCCGGGCGAAGTCCCAGGTGGCTGATGGCGGCGGCGGAGGATCTCTTCC
CTCCCGCGCCAGATCAGGTGAGGCGGGTCACCCATGGCGCCGGGGCGCTCTCCCCCGATCTGCGTCGCGGCGGCGCGTCT
AGGCGACGGCGCAAGGCGGCGGCATGGTGCTGCTAGGCTCCGGGGAAGATCTGGTGGCGCCGGTCGTTCGATGGGCTCGC
GGGGCCATGATGGCCTTGGTCGCGGTGGCCGGCGGCTGGATCCCGGGGCGGCGGCCCTGGAAGGTGGCGGCAGGTGAAGC
TTAGGCTTCCCGCGGCGGCATGGCGTGATGCTGTCCCTATCCAAGGCGGATCTGCATCGCCGATCTCATGGTTTTGCCGC
GGATTGGTTTAGATCAGAGACGGCAATGAGTGTGCAGGATCATCTTGGCGGCTCTCGTGGTTTGGCGAGGTGGGGTGAGA
GCCCTCCTCTTAGGCTCCAGTGGTGGCGCACTCAGGCAGTGGCCGGTGCGCCAGGCTCCTACGGTGGCCACTGTTGTTGC
GGTTGGTCGCCGGATCTAGGCGGCTAGATCTGGGGCTTTGAAGGCGGTCGAGACAGTGCACAGGTTGTCGGGTGGATTTC
TTGGGACGGATCCAGGTGAAAACTTGGTCTTTGGTCGTTGGCCGGAGCCGGTGATGAGGATGCCCTTATCATTGTTTCTT
TCATGAAGGCATCATCGAGGTGAAGCTCCCAACCCCGCCTAATACCTCCGGGGGAAACCCTAGATCAGCTGTTCGGATGA
CGGTGGCATTCATGTGTCGTTACCCCCTTGGGGGCGGCATCCTTGGAGAGGCACTCGGGCTCGAGGGACCAGCGGATGGC
TTCTTCGGTGGAGCAGTGTTTATTTCTACATATTCATGGCGGCGATTCTCGGCGGTATGGAGCAGTGGAGGCTTGGCGTC
AGATGTGTGGTAATGGACACGCGCTGGAGGTCGACATTGTCTGGCGTCGATGGCAGAGAGGCCTGACAAGGTCGATGCGT
CAGTACATGCTTTGAGGATGGATCGAGGGAAGACGGAGGTGACGGCCCTTTGCAGCGTGTGCGTGTGGTACTCACTGAGA
GTGCGCCGGACCGGGGTGTTACCCAGTCCCGCCTATGTGGCTTGGATGGGGCATCCGGCGTTAGATGTTAGGCTTTTGTG
CGATGTCCGTTTGGTGTTTGGCCCGGACATTCGGCACCCCTTCATCAAGAGGATATGAGTAGCGACAGATGTCGTCTAGA
TGGTGGCCTCGGGCTTACAGTTGTATTTCTTTGTAAGATCTTTGTGAATAATAAATAATATAGCCGCATGCATCTCCCAG
ATGTAGAGGCCGGGGGTGATTCCTCCTTTTCTAAAAAAAAACTAGCAGGTTGGTGATACATAATCCTACGGCAAGGGAAT
GCTATACACTTGGTGGGTTCTCCTCCAAGCAGAATGAAAAAGGTCATGGATACGGCTATTTAGAGGCATATTGTTTATAT
GTCAAGTTGGCACAATAAAATGAAAACCGAAAAGAGAATACCCTCTATTACCTCAGTCGTGTGCTCATAGGAGCTTAGCA
TGTGTACTCTCCTTCGAAAACATTGTTATGCACTGGTGTTTGCTGTCAAGAAGCTACGGCACTACATGATAGCACATCTG
GTTACCCTCATCTTCAAATTCACCCACTAAATAAATATCTCATGACAAGAGCAATACTTATAAGAAGATTGGCAAGATGG
GGCGATGACTACATAATGAGTCAATAAAAAGCGTCATTTAATGAGAAAATCTGCTTTAGGTGATTAGGCGATGATGGGAC
GGCTGAAAAGAAGACTGAAAAAGGCATTGTCGCATAGTGCTCGCTGCTTCCGCATTCAGTTTCAGTTTTCAGTTCTAACA
ATTTCAAGTGTGATGGTATATAATTAAAGACACGGATACATTTCTGAGGGAGATCATGATCGATCGATGAAACAGTGGTA
GTTAGGCTCATGTCAAAGAATGGTGAGACCGCCCGGTCAATGGTTAAGGAAAAACAGTGATTTGTTAATTTAAAATTGTG
AAGCCTCGGCATTCGCTTTCTGCGGCAATTTGACTATACTAGCGAGTCTCCATTCAAACTTGTACTACCAGCTCCGGCAT
ATTG--------AATGTAGTAGCGAGCCTCTGTTCAATATTTCCCTCATTTCATTTCACAAGGCAAAATTAATACACTCT
GATTACCTA-----------------------------------------------------------------------
--------------------------------------------------------------------------------
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>chr2A_954
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TCTCATCAGAATCCAGAGTCCAGACGCGAGAACTCACACCGA--------------------------------------
----------------------------------------------C---------------------------------
-------------------GGACATGGGGAACTGCCAGGCGGCGGACGCGGTGGCCGTGGTGATCCAGCACCCGGGCGAT
GGCAAGGTGGAGCGCCTCCACTGGCCGACCACCGCGGCGGACGTCATGCGCAGGAACCCCGGCCACTACGTCGCCCTCGT
CGTCCTGCACCACGCCGACGCC------------GAGTCCGGCCCCGCCGTCGCCGGAGAAAGAGGAGGTGCCAGGATAA
CCAAGATCAAGCTCCTCAAGCCAAGGGACACGCTCCTCCTCGGCCAGGTCTACCGCCTCATCACCTCCCAAGGTTCGTGC
-----------CAA-----------------------------------AGACGGTTCTTGGCTTGGATTCTT-C--CAC
TTCTTGTCCGGCCCCCTCTCTTGCTTCCATGGAGTTCAG------CCAATTAT----TCCCTG--------GCGCGTACA
GAGGTGACCAAGGCCGTGAAGACGAGGAAGCAGGAGAGGATGCGCGGCTGCGACGAGGTGATTGAGCAGCAGCGGCCACG
GCTGCACCGGCGGCGGCAACAGCAGAGGCCCAGGGGCGACGACGCGGCCACGGCC---GCCAACGGAGAACAGAGCCAGC
CCGCCGACCACCAGG-----------------------------------------------------------------
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>chr2D_996
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----------------------------------------------C---------------------------------
-------------------GGGCATGGGGAACTGCCAGGCGGCGGACGCGGCGGCCGTGGTGATCCAGCACCCGGGCGAC
GGCAAGGTGGAGCGCCTCCACTGGCCGACCACCGCGGCGGACGTCATGCGCAGGAACCCCGGCCACTACGTCGCGCTCGT
CGTCCTGCATCACGTCGACGCC------------GAGCCCGACCCGGCCGTCGCCGGAGAAAGAGGAGGTGCCAGGGTAA
CCAAGATCAAGCTCCTCAAGCCAAAAGACACGCTCCTCCTCGGCCAGGTCTACCGCCTCATCACCTCCCAAGGTTCGTGC
-----------CGAATTAGCAGTATCCCGGTGAAT------CTA-------CCAGTTCTTGGATTGGTTTCTT-T--CA-
-----------------------------TAGGGAT------T----AATCGT----TCCGTTGTGCGTGCGTGCGTGCA
GAGGTGACCAAGGCCGTTCAGACGAGGAAGCAGGAGAGGATGCGCGGTTGCGACGAGGCGATCGAGCAGGAGTGGCCGCG
GCTGCACTGGCGGCGGCAACCGCCGAGGCCGAGGGGCGACAACGCAGCCACAGCAGCAGCCAACGGAGAACAGAGGCAGC
CCGCCGAGCACCAGG-----------------------------------------------------------------
------------------------AACGGAAGCGGCTGGAGAAGGACCGGCACCACCGGAGCATGGCCGCCGCCCGC---
---------GGCAGAGGCCGGCACTGGCGACCGGCGTTGCAGAGCATTACAGAGTCGTCGTCCAGCGGACACGCCGACTG
CGAGGATATACTACTATCCAAATGA-----------------------ACTAGAAAAGTAGAAGAAGGTTTTTGGGGAGC
----TAGAA-------------ATGTAGG---TACATTAGGCGATCTGAATGTATCA-ATCGGCTTCTGTCCCGTTTGAA
TCCGTTTTGGTGATACAGTAGCATGCATCGCCC-----------------------------------------------
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------------
>SNPs
S--SS-----------------S----S----S-----------------------------------------S-----
-------S------S--------------S-S--------------------------------------S--S------
---------S---------------------------------------------S------------------------
---S-----------------------------------------S--S-S----S------S-----------------
-------------------S---S------S-------S-----S------SSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSS--------------S------S--SS---S--SSSSSS----------------------S---S-
---S-SSSS-SS--SSS-SSS-SSS-SSSSSSSSSSSSSSSSSSSSSSSS-SS--SS-----------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
-S-S------------------S---------------------------------------------------------
------------------------------------------------------------------S-------------
----------------------------------------------SS-SSS--S-------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------S-----
--------------S----------------S-------------------S--S-------------------------
----------------S-------------S-------------------------------------------------
--------------------------------------------------------------------------------
------------------------------------S-------------------------------------------
--------------------------------------------------------------------------------
-----------------------S----------S---------------------------------------------
-----------------------------------------------------------------------------S--
-------------------S----S---------------------------S------S--------------------
--------------------------------------------------------------------------------
-------------------------------------------------------------------S------------
---------S--------------S-------------------------------------------------------
--------------------------------------------------------------------------------
S-----------------------------------S-S--------------------------------S--------
-------------------S---S------------SSSSSSSSSSSSSS---------S-----------S--------
-S--S-------S---S--S---------------S-----------------S-------------------S------
-----------------------------------------------------------S--------S----------S
--S-----------------------------------------------------------------------------
-----S---------------------S---------------------S-------------S----------------
---------------------------------S---SS-S-S----------S-------S-SS----------S----
-------------------S-SS-----------S----S----S-----S--SSSSS----SSS-S----------S--
-S-S-SSSS-SSSSS-S---------------------------------------------------------------
--------------------------------------------------------------------------------
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-------------------------S----S--S-------SS-S----S-SSSS-S-SS--------------------
---------------S---------S-----S------------S----S--------------S-----------S--S
-------S-SS----------------------------------S------S----------------------SS---
----S--------S-SS------S------S--S-------------SS-----------------------------SS
--------SS-------S--S--S--S------S---------S----------S----------S---------S----
----SSSSSSSS--------------S---SS----------SSS--S---SS---S-----S-SS------------S-
--S------SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSS
>forward_33
-------------CATGATGTCCCGGTACCACG-----------------------------------------------
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>reverse_1758
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-----------------------------------------------------------------------------TGT
CCTCCTCCATCACGACT---------------------------------------------------------------
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>forward_1624
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----AGAACTCAAACCGACGGACG--------------------------------------------------------
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>reverse_5382
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---------------------AAGCCATGCAGCTCAGTGAT---------------------------------------
------------
